Regulog NsrR - Burkholderia
| Regulator type: | Transcription factor |
| Regulator family: | Rrf2 |
| Regulation mode: | repressor |
| Biological process: | Nitrosative stress response |
| Effector: | Nitric oxide |
| Phylum: | Proteobacteria/beta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - NsrR
- By taxonomy - Burkholderia
- By TF family - Rrf2
- By effector - Nitric oxide
- By pathway - Nitrosative stress response
| Genome | Genes | Operons |
|---|---|---|
| Burkholderia pseudomallei K96243 | 5 | 5 |
| Burkholderia mallei ATCC 23344 | 4 | 4 |
| Burkholderia sp. 383 | 3 | 2 |
| Burkholderia cepacia AMMD | 3 | 2 |
| Burkholderia vietnamiensis G4 | 7 | 3 |
| Burkholderia glumae BGR1 | 3 | 2 |
| Burkholderia xenovorans LB400 | 2 | 2 |
| Burkholderia phymatum STM815 | 4 | 3 |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| norB |
*
Burkholderia pseudomallei K96243 Site: position = -93 score = 4.56835 sequence = CATACATTCTTTGTACATG Gene: BPSL2351: Nitric-oxide reductase (EC 1.7.99.7), quinol-dependent |
*
Burkholderia mallei ATCC 23344 Site: position = -93 score = 4.56835 sequence = CATACATTCTTTGTACATG Gene: BMA0633: Nitric-oxide reductase (EC 1.7.99.7), quinol-dependent |
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Nitric-oxide reductase (EC 1.7.99.7), quinol-dependent |
| CRON 2. | |||||||||
| nsrR2 |
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*
Burkholderia vietnamiensis G4 Site: position = -87 score = 4.22009 sequence = GAAGTATTTTTAATGCATG Gene: Bcep1808_6181: Nitrite-sensitive transcriptional repressor NsrR |
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Nitrite-sensitive transcriptional repressor NsrR |
| nnrS |
*2
Burkholderia pseudomallei K96243 Site: position = -36 score = 5.01668 sequence = GATACATAATAAATGCATC Gene: BPSL2368: NnrS protein involved in response to NO Site: position = -39 score = 4.64399 sequence = CATGCATCAAGAAAGCAAC Gene: BPSL2355: NnrS protein involved in response to NO |
*2
Burkholderia mallei ATCC 23344 Site: position = -12 score = 5.01668 sequence = GATACATAATAAATGCATC Gene: BMA0614: NnrS protein involved in response to NO Site: position = -39 score = 4.64399 sequence = CATGCATCAAGAAAGCAAC Gene: BMA0630: NnrS protein involved in response to NO |
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Gene: Bcep1808_6182: NnrS protein involved in response to NO |
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NnrS protein involved in response to NO |
| PF01814 |
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Gene: Bcep1808_6183: hemerythrin HHE cation binding domain-containing protein |
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hemerythrin HHE cation binding domain-containing protein |
| PF10006 |
*
Burkholderia pseudomallei K96243 Site: position = -144 score = 4.5495 sequence = GTTGCTCACAATATGCATC Gene: BPSS1139: hypothetical protein |
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Gene: Bcep1808_6184: hypothetical protein |
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hypothetical protein |
| CRON 3. | |||||||||
| hcp |
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*
Burkholderia sp. 383 Site: position = -111 score = 4.82242 sequence = GATGCATACGCAACGCATC Gene: Bcep18194_B1121: Hydroxylamine reductase (EC 1.7.-.-) |
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Burkholderia cepacia AMMD Site: position = -111 score = 4.8585 sequence = GATGCATCAGAGAAGCATC Gene: Bamb_4090: Hydroxylamine reductase (EC 1.7.-.-) |
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Burkholderia vietnamiensis G4 Site: position = -109 score = 5.17024 sequence = GATGCATAAAGAACGCATC Gene: Bcep1808_5223: Hydroxylamine reductase (EC 1.7.-.-) |
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Burkholderia glumae BGR1 Site: position = -110 score = 4.92499 sequence = GATGCATGAATGACGCATC Gene: bglu_2g04830: Hydroxylamine reductase (EC 1.7.-.-) |
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Burkholderia phymatum STM815 Site: position = -67 score = 3.80219 sequence = CATGCGCAGACGATCCATA Gene: Bphy_6194: Hydroxylamine reductase (EC 1.7.-.-) |
Hydroxylamine reductase (EC 1.7.-.-) |
| hcr |
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Gene: Bcep18194_B1122: NADH oxidoreductase hcr (EC 1.-.-.-) |
Gene: Bamb_4089: NADH oxidoreductase hcr (EC 1.-.-.-) |
Gene: Bcep1808_5222: NADH oxidoreductase hcr (EC 1.-.-.-) |
Gene: bglu_2g04840: NADH oxidoreductase hcr (EC 1.-.-.-) |
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Gene: Bphy_6193: NADH oxidoreductase hcr (EC 1.-.-.-) |
NADH oxidoreductase hcr (EC 1.-.-.-) |
| CRON 4. | |||||||||
| nsrR |
Gene: BPSL1483: Nitrite-sensitive transcriptional repressor NsrR |
Gene: BMA1378: Nitrite-sensitive transcriptional repressor NsrR |
Gene: Bcep18194_A5149: Nitrite-sensitive transcriptional repressor NsrR |
Gene: Bamb_1786: Nitrite-sensitive transcriptional repressor NsrR |
Gene: Bcep1808_1775: Nitrite-sensitive transcriptional repressor NsrR |
Gene: bglu_1g14220: Nitrite-sensitive transcriptional repressor NsrR |
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Burkholderia xenovorans LB400 Site: position = -107 score = 3.81954 sequence = CATGCGTAGCGCCTGCATC Gene: Bxe_A2375: Nitrite-sensitive transcriptional repressor NsrR |
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Burkholderia phymatum STM815 Site: position = -70 score = 4.31239 sequence = GATGTGTTTTAAAAGCATG Gene: Bphy_0937: Nitrite-sensitive transcriptional repressor NsrR |
Nitrite-sensitive transcriptional repressor NsrR |
| CRON 5. | |||||||||
| PF01152 |
Gene: BPSL1482: Truncated hemoglobins |
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Gene: Bcep18194_A5150: Truncated hemoglobins |
Gene: Bamb_1787: Truncated hemoglobins |
Gene: Bcep1808_1776: Truncated hemoglobins |
Gene: bglu_1g14210: Truncated hemoglobins |
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Burkholderia xenovorans LB400 Site: position = -218 score = 3.81954 sequence = GATGCAGGCGCTACGCATG Gene: Bxe_A2376: Truncated hemoglobins |
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Burkholderia phymatum STM815 Site: position = -156 score = 4.31239 sequence = CATGCTTTTAAAACACATC Gene: Bphy_0936: Truncated hemoglobins |
Truncated hemoglobins |
| CRON 6. | |||||||||
| hmp |
*
Burkholderia pseudomallei K96243 Site: position = -39 score = 4.4267 sequence = GATGTATCGTTTGCGAATG Gene: BPSL2840: Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17) |
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Burkholderia mallei ATCC 23344 Site: position = -39 score = 4.4267 sequence = GATGTATCGTTTGCGAATG Gene: BMA2417: Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17) |
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Burkholderia sp. 383 Site: position = -36 score = 4.8642 sequence = GATGTATCGTATGTGCATG Gene: Bcep18194_A3823: Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17) |
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Burkholderia cepacia AMMD Site: position = -36 score = 4.8642 sequence = GATGTATCGTATGTGCATG Gene: Bamb_0627: Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17) |
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Burkholderia vietnamiensis G4 Site: position = -35 score = 4.69109 sequence = CATGTATCGTTTGAGCATG Gene: Bcep1808_0698: Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17) |
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Burkholderia glumae BGR1 Site: position = -48 score = 4.37861 sequence = AATGTATCGTGTATGAATC Gene: bglu_1g06210: Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17) |
Gene: Bxe_B2333: Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17) |
Gene: Bphy_4026: Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17) |
Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |