Regulog NsrR - Ralstonia
| Regulator type: | Transcription factor |
| Regulator family: | Rrf2 |
| Regulation mode: | repressor |
| Biological process: | Nitrosative stress response |
| Effector: | Nitric oxide |
| Phylum: | Proteobacteria/beta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Ralstonia
- By trascription factor - NsrR
- By TF family - Rrf2
- By effector - Nitric oxide
- By pathway - Nitrosative stress response
| Genome | Genes | Operons |
|---|---|---|
| Ralstonia eutropha H16 | 2 | 2 |
| Cupriavidus taiwanensis | 2 | 2 |
| Ralstonia metallidurans CH34 | 4 | 4 |
| Ralstonia eutropha JMP134 | 2 | 2 |
| Ralstonia solanacearum GMI1000 | 8 | 4 |
| Ralstonia pickettii 12J | 9 | 5 |
| Genes | Function | ||||||
|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||
| PHG233 |
Gene: PHG233: Hemerythrin HHE cation binding domain protein |
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Ralstonia pickettii 12J Site: position = -102 score = 5.54626 sequence = GATGTATTGTCAATGCATG Gene: Rpic_2508: Hemerythrin HHE cation binding domain protein |
Hemerythrin HHE cation binding domain protein |
| CRON 2. | |||||||
| hmp |
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Ralstonia eutropha H16 Site: position = -41 score = 5.63472 sequence = CATGCATTTAATTTGCATG Gene: H16_A3533: Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17) |
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Cupriavidus taiwanensis Site: position = -40 score = 4.62545 sequence = CATGCATATTTTCTGCATG Gene: RALTA_A2986: Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17) |
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Ralstonia metallidurans CH34 Site: position = 32 score = 6.04074 sequence = CATGCATTTTACATGCATG Gene: Rmet_3382: Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17) |
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Ralstonia eutropha JMP134 Site: position = -41 score = 5.47753 sequence = CATGCATTTTGTTTGCATG Gene: Reut_A3219: Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17) |
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Ralstonia solanacearum GMI1000 Site: position = -133 score = 4.32149 sequence = GTGGTATTTAATATGCATG Gene: RS01706: Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17) |
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Ralstonia pickettii 12J Site: position = -32 score = 3.60448 sequence = GTTGCATATTTCACGCATA Gene: Rpic_3609: Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17) |
Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17) |
| nnrS |
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Ralstonia metallidurans CH34 Site: position = -62 score = 5.5971 sequence = ATTGCATTTAAGATGCATG Gene: Rmet_5307: NnrS protein involved in response to NO |
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Gene: RS01707: NnrS protein involved in response to NO |
Gene: Rpic_3610: NnrS protein involved in response to NO |
NnrS protein involved in response to NO |
| CRON 3. | |||||||
| nsrR |
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Ralstonia eutropha H16 Site: position = -39 score = 5.2989 sequence = CTTGCATCCTGGATGCATC Gene: H16_A3534: Nitrite-sensitive transcriptional repressor NsrR |
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Cupriavidus taiwanensis Site: position = -40 score = 5.45609 sequence = CTTGCATCCTAGATGCATC Gene: RALTA_A2987: Nitrite-sensitive transcriptional repressor NsrR |
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Ralstonia metallidurans CH34 Site: position = -25 score = 5.45773 sequence = CTTGCATTGGCGATGCACG Gene: Rmet_3383: Nitrite-sensitive transcriptional repressor NsrR |
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Ralstonia eutropha JMP134 Site: position = -39 score = 4.5798 sequence = CTTGCATTTGAAATGCCGC Gene: Reut_A3220: Nitrite-sensitive transcriptional repressor NsrR |
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Ralstonia solanacearum GMI1000 Site: position = -134 score = 4.32149 sequence = CATGCATATTAAATACCAC Gene: RS01705: Nitrite-sensitive transcriptional repressor NsrR |
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Ralstonia pickettii 12J Site: position = -218 score = 3.60448 sequence = TATGCGTGAAATATGCAAC Gene: Rpic_3608: Nitrite-sensitive transcriptional repressor NsrR |
Nitrite-sensitive transcriptional repressor NsrR |
| CRON 4. | |||||||
| PF10006 |
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Ralstonia metallidurans CH34 Site: position = -53 score = 5.60085 sequence = GATGCAATTTAAATGCATC Gene: Rmet_4922: hypothetical protein, PF10006 |
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Ralstonia solanacearum GMI1000 Site: position = -103 score = 3.68083 sequence = CAAGTATCTGATATACATC Site: position = -53 score = 5.84968 sequence = GATGCATTCTCAATGCATC Gene: RS03037: hypothetical protein, PF10006 |
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Ralstonia pickettii 12J Site: position = -101 score = 4.31863 sequence = CAAGCATCTGATATACATC Site: position = -51 score = 4.95742 sequence = GTTGCATCCTTAATGCATC Gene: Rpic_4014: hypothetical protein, PF10006 |
hypothetical protein, PF10006 |
| norB |
Gene: PHG244: Nitric-oxide reductase (EC 1.7.99.7), quinol-dependent |
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Gene: Rmet_3167: Nitric-oxide reductase (EC 1.7.99.7), quinol-dependent |
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Gene: RSp1505: Nitric-oxide reductase (EC 1.7.99.7), quinol-dependent |
Gene: Rpic_4013: Nitric-oxide reductase (EC 1.7.99.7), quinol-dependent |
Nitric-oxide reductase (EC 1.7.99.7), quinol-dependent |
| CRON 5. | |||||||
| nirK |
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Ralstonia solanacearum GMI1000 Site: position = -203 score = 5.84968 sequence = GATGCATTGAGAATGCATC Site: position = -153 score = 3.68083 sequence = GATGTATATCAGATACTTG Gene: RS03038: Copper-containing nitrite reductase (EC 1.7.2.1) |
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Ralstonia pickettii 12J Site: position = -241 score = 4.95742 sequence = GATGCATTAAGGATGCAAC Site: position = -191 score = 4.31863 sequence = GATGTATATCAGATGCTTG Gene: Rpic_4015: Copper-containing nitrite reductase (EC 1.7.2.1) |
Copper-containing nitrite reductase (EC 1.7.2.1) |
| PF03781 |
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Gene: RS03039: Probable signal peptide protein, PF03781 |
Gene: Rpic_4016: Probable signal peptide protein, PF03781 |
Probable signal peptide protein, PF03781 |
| PF02630 |
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Gene: RS03040: electron transport protein SCO1/SenC |
Gene: Rpic_4017: electron transport protein SCO1/SenC |
electron transport protein SCO1/SenC |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |