Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog FabR - Xanthomonadales

Properties
Regulator type: Transcription factor
Regulator family: TetR
Regulation mode: repressor
Biological process: Fatty acid biosynthesis
Effector: Unsaturated acyl-CoA; Unsaturated acyl-ACP
Phylum: Proteobacteria/gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 6 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Xylella fastidiosa 9a5c
Xanthomonas axonopodis pv. citri str. 306 3 2
Xanthomonas campestris pv. campestris str. ATCC 33913 3 2
Stenotrophomonas maltophilia K279a 3 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
desC
 
Xylella fastidiosa 9a5c
*
Xanthomonas axonopodis pv. citri str. 306

Site:
position = -49
score = 6.16239
sequence = AATATACAAGTGTATACA

Gene: XAC3960: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1
*
Xanthomonas campestris pv. campestris str. ATCC 33913

Site:
position = -31
score = 5.92449
sequence = GATATACAACTGTATACA

Gene: XCC3879: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1
*
Stenotrophomonas maltophilia K279a

Site:
position = -9
score = 6.28133
sequence = AATATACACATGTATACA

Gene: Smlt2832: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1
Flavodoxin reductases (ferredoxin-NADPH reductases) family 1
desB
 
Xylella fastidiosa 9a5c
 
Xanthomonas axonopodis pv. citri str. 306

Gene: XAC3959: Acyl-CoA delta-9-desaturase, DesB
 
Xanthomonas campestris pv. campestris str. ATCC 33913

Gene: XCC3878: Acyl-CoA delta-9-desaturase, DesB
 
Stenotrophomonas maltophilia K279a

Gene: Smlt2831: Acyl-CoA delta-9-desaturase, DesB
Acyl-CoA delta-9-desaturase, DesB
 
CRON 2.
fabR2
 
Xylella fastidiosa 9a5c
*
Xanthomonas axonopodis pv. citri str. 306

Site:
position = -61
score = 6.16239
sequence = TGTATACACTTGTATATT

Gene: XAC3961: Unsaturated fatty acid biosythesis repressor FabR, TetR family
*
Xanthomonas campestris pv. campestris str. ATCC 33913

Site:
position = -62
score = 5.92449
sequence = TGTATACAGTTGTATATC

Gene: XCC3880: Unsaturated fatty acid biosythesis repressor FabR, TetR family
*
Stenotrophomonas maltophilia K279a

Site:
position = -62
score = 6.28133
sequence = TGTATACATGTGTATATT

Gene: Smlt2833: Unsaturated fatty acid biosythesis repressor FabR, TetR family
Unsaturated fatty acid biosythesis repressor FabR, TetR family
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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