Regulog FabR - Psychromonadaceae/Aeromonadales

Properties
Regulator type:	Transcription factor
Regulator family:	TetR
Regulation mode:	repressor
Biological process:	Fatty acid biosynthesis
Effector:	Unsaturated acyl-ACP; Unsaturated acyl-CoA
Phylum:	Proteobacteria/gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 27 sites [see more]

Member of regulog collections

By taxonomy - Psychromonadaceae/Aeromonadales
By trascription factor - FabR
By TF family - TetR
By effector - Unsaturated acyl-ACP
By effector - Unsaturated acyl-CoA
By pathway - Fatty acid biosynthesis

Statistics of regulated genes
Genome	Genes	Operons
Psychromonas ingrahamii 37	2	2
Psychromonas sp. CNPT3
Moritella sp. PE36	9	7
Aeromonas hydrophila subsp. hydrophila ATCC 7966	7	7
Aeromonas salmonicida subsp. salmonicida A449	7	7
Tolumonas auensis DSM 9187

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes							Function

CRON 1.
fabR	* Psychromonas ingrahamii 37 Site: position = -179 score = 5.37784 sequence = AGCGTACAGATGTACACC Gene: Ping_1493: Unsaturated fatty acid biosythesis repressor FabR, TetR family	Psychromonas sp. CNPT3	Moritella sp. PE36 Gene: PE36_23812: Unsaturated fatty acid biosythesis repressor FabR, TetR family	* Aeromonas hydrophila subsp. hydrophila ATCC 7966 Site: position = -131 score = 5.3758 sequence = AGCGAACAGCTGTGCGCC Gene: AHA_0367: Unsaturated fatty acid biosythesis repressor FabR, TetR family	* Aeromonas salmonicida subsp. salmonicida A449 Site: position = -132 score = 5.3758 sequence = AGCGAACAGCTGTGCGCC Gene: ASA_3965: Unsaturated fatty acid biosythesis repressor FabR, TetR family	Tolumonas auensis DSM 9187	Unsaturated fatty acid biosythesis repressor FabR, TetR family

CRON 2.
fadL	Psychromonas ingrahamii 37	Psychromonas sp. CNPT3	Moritella sp. PE36	* Aeromonas hydrophila subsp. hydrophila ATCC 7966 Site: position = -192 score = 4.26322 sequence = AGCGTACACCTGTAGTAA Site: position = -179 score = 5.03078 sequence = AGTAAACAACTGTACGCT Gene: AHA_2144: Long-chain fatty acid transport protein	* Aeromonas salmonicida subsp. salmonicida A449 Site: position = -192 score = 4.17699 sequence = AGCGTACAGCTGTAGCAA Site: position = -179 score = 4.46757 sequence = AGCAAACACCTGTTCACA Gene: ASA_2157: Long-chain fatty acid transport protein	Tolumonas auensis DSM 9187	Long-chain fatty acid transport protein

CRON 3.
pfaA	Psychromonas ingrahamii 37 Gene: Ping_1684: omega-3 polyunsaturated fatty acid synthase subunit, PfaA	Psychromonas sp. CNPT3 Gene: PCNPT3_08215: omega-3 polyunsaturated fatty acid synthase subunit, PfaA	* Moritella sp. PE36 Site: position = -101 score = 5.83017 sequence = AGAGTACACTTGTACGCT Gene: PE36_12337: omega-3 polyunsaturated fatty acid synthase subunit, PfaA	Aeromonas hydrophila subsp. hydrophila ATCC 7966	Aeromonas salmonicida subsp. salmonicida A449	Tolumonas auensis DSM 9187	omega-3 polyunsaturated fatty acid synthase subunit, PfaA
pfaB	Psychromonas ingrahamii 37 Gene: Ping_1685: omega-3 polyunsaturated fatty acid synthase subunit, PfaB	Psychromonas sp. CNPT3 Gene: PCNPT3_08210: omega-3 polyunsaturated fatty acid synthase subunit, PfaB	Moritella sp. PE36 Gene: PE36_12332: omega-3 polyunsaturated fatty acid synthase subunit, PfaB	Aeromonas hydrophila subsp. hydrophila ATCC 7966	Aeromonas salmonicida subsp. salmonicida A449	Tolumonas auensis DSM 9187	omega-3 polyunsaturated fatty acid synthase subunit, PfaB

CRON 4.
desC	Psychromonas ingrahamii 37	Psychromonas sp. CNPT3	* Moritella sp. PE36 Site: position = -45 score = 5.93194 sequence = AGTGTACACGTGTAAGCT Gene: PE36_07177: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1	Aeromonas hydrophila subsp. hydrophila ATCC 7966	Aeromonas salmonicida subsp. salmonicida A449	Tolumonas auensis DSM 9187	Flavodoxin reductases (ferredoxin-NADPH reductases) family 1
desB	Psychromonas ingrahamii 37	Psychromonas sp. CNPT3	Moritella sp. PE36 Gene: PE36_07172: Acyl-CoA delta-9-desaturase, DesB	Aeromonas hydrophila subsp. hydrophila ATCC 7966	Aeromonas salmonicida subsp. salmonicida A449	Tolumonas auensis DSM 9187	Acyl-CoA delta-9-desaturase, DesB

CRON 5.
plsC	Psychromonas ingrahamii 37 Gene: Ping_0863: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)	Psychromonas sp. CNPT3 Gene: PCNPT3_04132: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)	* Moritella sp. PE36 Site: position = -64 score = 4.95324 sequence = AGCTAACGCTTGTACACT Gene: PE36_00604: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)	* Aeromonas hydrophila subsp. hydrophila ATCC 7966 Site: position = -65 score = 5.1183 sequence = GGCGAACGCTTGTTCGCT Gene: AHA_3740: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)	* Aeromonas salmonicida subsp. salmonicida A449 Site: position = -65 score = 5.1183 sequence = GGCGAACGCTTGTTCGCT Gene: ASA_0546: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)	Tolumonas auensis DSM 9187 Gene: Tola_0464: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)	1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)

CRON 6.
lcfH	Psychromonas ingrahamii 37	Psychromonas sp. CNPT3	* Moritella sp. PE36 Site: position = -56 score = 5.56282 sequence = GGCTTACAAGTGTAAGCC Gene: PE36_22265: putative long-chain-fatty-acid--CoA ligase	* Aeromonas hydrophila subsp. hydrophila ATCC 7966 Site: position = -98 score = 5.79867 sequence = GGCGAACACTTGTAAGCT Site: position = -33 score = 4.53801 sequence = GGCGTACAACTGTTACTT Gene: AHA_0722: putative long-chain-fatty-acid--CoA ligase	* Aeromonas salmonicida subsp. salmonicida A449 Site: position = -33 score = 4.53801 sequence = GGCGTACAACTGTTACTT Site: position = -97 score = 6.12767 sequence = AGCGAACACTTGTAAGCT Gene: ASA_0719: putative long-chain-fatty-acid--CoA ligase	Tolumonas auensis DSM 9187	putative long-chain-fatty-acid--CoA ligase

CRON 7.
fabA	Psychromonas ingrahamii 37 Gene: Ping_1982: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)	Psychromonas sp. CNPT3 Gene: PCNPT3_07260: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)	* Moritella sp. PE36 Site: position = -49 score = 5.96505 sequence = GGCGTACAGATGTACGCT Gene: PE36_11777: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)	* Aeromonas hydrophila subsp. hydrophila ATCC 7966 Site: position = -57 score = 6.13971 sequence = AGCGAACAACTGTACGCT Gene: AHA_2280: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)	* Aeromonas salmonicida subsp. salmonicida A449 Site: position = -57 score = 5.86866 sequence = AGCGCACAAGTGTACGCT Gene: ASA_2000: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)	Tolumonas auensis DSM 9187 Gene: Tola_1422: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)	3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)

CRON 8.
hyIII	Psychromonas ingrahamii 37 Gene: Ping_1130: COG1272: Predicted membrane protein hemolysin III homolog	Psychromonas sp. CNPT3	* Moritella sp. PE36 Site: position = -51 score = 6.41738 sequence = AGCGTACACTTGTACGCT Gene: PE36_03571: COG1272: Predicted membrane protein hemolysin III homolog	* Aeromonas hydrophila subsp. hydrophila ATCC 7966 Site: position = -64 score = 5.54045 sequence = AGCTAACACTTGTACTCT Gene: AHA_3493: COG1272: Predicted membrane protein hemolysin III homolog	* Aeromonas salmonicida subsp. salmonicida A449 Site: position = -64 score = 5.54045 sequence = AGCTAACACTTGTACTCT Gene: ASA_0824: COG1272: Predicted membrane protein hemolysin III homolog	Tolumonas auensis DSM 9187	COG1272: Predicted membrane protein hemolysin III homolog

CRON 9.
OLE1	* Psychromonas ingrahamii 37 Site: position = -56 score = 5.37784 sequence = GGTGTACATCTGTACGCT Gene: Ping_1494: Fatty acid desaturase (EC 1.14.19.1)	Psychromonas sp. CNPT3	* Moritella sp. PE36 Site: position = -60 score = 5.77038 sequence = AGCTTACACTTGTGCGCT Gene: PE36_01362: Fatty acid desaturase (EC 1.14.19.1)	* Aeromonas hydrophila subsp. hydrophila ATCC 7966 Site: position = -35 score = 5.3758 sequence = GGCGCACAGCTGTTCGCT Gene: AHA_0366: Fatty acid desaturase (EC 1.14.19.1)	* Aeromonas salmonicida subsp. salmonicida A449 Site: position = -35 score = 5.3758 sequence = GGCGCACAGCTGTTCGCT Gene: ASA_3966: Fatty acid desaturase (EC 1.14.19.1)	Tolumonas auensis DSM 9187	Fatty acid desaturase (EC 1.14.19.1)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog FabR - Psychromonadaceae/Aeromonadales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --