Regulog FabR - Psychromonadaceae/Aeromonadales
| Regulator type: | Transcription factor |
| Regulator family: | TetR |
| Regulation mode: | repressor |
| Biological process: | Fatty acid biosynthesis |
| Effector: | Unsaturated acyl-ACP; Unsaturated acyl-CoA |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Psychromonadaceae/Aeromonadales
- By trascription factor - FabR
- By TF family - TetR
- By effector - Unsaturated acyl-ACP
- By effector - Unsaturated acyl-CoA
- By pathway - Fatty acid biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Psychromonas ingrahamii 37 | 2 | 2 |
| Psychromonas sp. CNPT3 | ||
| Moritella sp. PE36 | 9 | 7 |
| Aeromonas hydrophila subsp. hydrophila ATCC 7966 | 7 | 7 |
| Aeromonas salmonicida subsp. salmonicida A449 | 7 | 7 |
| Tolumonas auensis DSM 9187 |
| Genes | Function | ||||||
|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||
| fabR |
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Psychromonas ingrahamii 37 Site: position = -179 score = 5.37784 sequence = AGCGTACAGATGTACACC Gene: Ping_1493: Unsaturated fatty acid biosythesis repressor FabR, TetR family |
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Gene: PE36_23812: Unsaturated fatty acid biosythesis repressor FabR, TetR family |
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Aeromonas hydrophila subsp. hydrophila ATCC 7966 Site: position = -131 score = 5.3758 sequence = AGCGAACAGCTGTGCGCC Gene: AHA_0367: Unsaturated fatty acid biosythesis repressor FabR, TetR family |
*
Aeromonas salmonicida subsp. salmonicida A449 Site: position = -132 score = 5.3758 sequence = AGCGAACAGCTGTGCGCC Gene: ASA_3965: Unsaturated fatty acid biosythesis repressor FabR, TetR family |
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Unsaturated fatty acid biosythesis repressor FabR, TetR family |
| CRON 2. | |||||||
| fadL |
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|
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Aeromonas hydrophila subsp. hydrophila ATCC 7966 Site: position = -192 score = 4.26322 sequence = AGCGTACACCTGTAGTAA Site: position = -179 score = 5.03078 sequence = AGTAAACAACTGTACGCT Gene: AHA_2144: Long-chain fatty acid transport protein |
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Aeromonas salmonicida subsp. salmonicida A449 Site: position = -192 score = 4.17699 sequence = AGCGTACAGCTGTAGCAA Site: position = -179 score = 4.46757 sequence = AGCAAACACCTGTTCACA Gene: ASA_2157: Long-chain fatty acid transport protein |
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Long-chain fatty acid transport protein |
| CRON 3. | |||||||
| pfaA |
Gene: Ping_1684: omega-3 polyunsaturated fatty acid synthase subunit, PfaA |
Gene: PCNPT3_08215: omega-3 polyunsaturated fatty acid synthase subunit, PfaA |
*
Moritella sp. PE36 Site: position = -101 score = 5.83017 sequence = AGAGTACACTTGTACGCT Gene: PE36_12337: omega-3 polyunsaturated fatty acid synthase subunit, PfaA |
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omega-3 polyunsaturated fatty acid synthase subunit, PfaA |
| pfaB |
Gene: Ping_1685: omega-3 polyunsaturated fatty acid synthase subunit, PfaB |
Gene: PCNPT3_08210: omega-3 polyunsaturated fatty acid synthase subunit, PfaB |
Gene: PE36_12332: omega-3 polyunsaturated fatty acid synthase subunit, PfaB |
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|
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omega-3 polyunsaturated fatty acid synthase subunit, PfaB |
| CRON 4. | |||||||
| desC |
|
|
*
Moritella sp. PE36 Site: position = -45 score = 5.93194 sequence = AGTGTACACGTGTAAGCT Gene: PE36_07177: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 |
|
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Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 |
| desB |
|
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Gene: PE36_07172: Acyl-CoA delta-9-desaturase, DesB |
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|
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Acyl-CoA delta-9-desaturase, DesB |
| CRON 5. | |||||||
| plsC |
Gene: Ping_0863: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) |
Gene: PCNPT3_04132: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) |
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Moritella sp. PE36 Site: position = -64 score = 4.95324 sequence = AGCTAACGCTTGTACACT Gene: PE36_00604: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) |
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Aeromonas hydrophila subsp. hydrophila ATCC 7966 Site: position = -65 score = 5.1183 sequence = GGCGAACGCTTGTTCGCT Gene: AHA_3740: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) |
*
Aeromonas salmonicida subsp. salmonicida A449 Site: position = -65 score = 5.1183 sequence = GGCGAACGCTTGTTCGCT Gene: ASA_0546: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) |
Gene: Tola_0464: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) |
1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) |
| CRON 6. | |||||||
| lcfH |
|
|
*
Moritella sp. PE36 Site: position = -56 score = 5.56282 sequence = GGCTTACAAGTGTAAGCC Gene: PE36_22265: putative long-chain-fatty-acid--CoA ligase |
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Aeromonas hydrophila subsp. hydrophila ATCC 7966 Site: position = -98 score = 5.79867 sequence = GGCGAACACTTGTAAGCT Site: position = -33 score = 4.53801 sequence = GGCGTACAACTGTTACTT Gene: AHA_0722: putative long-chain-fatty-acid--CoA ligase |
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Aeromonas salmonicida subsp. salmonicida A449 Site: position = -33 score = 4.53801 sequence = GGCGTACAACTGTTACTT Site: position = -97 score = 6.12767 sequence = AGCGAACACTTGTAAGCT Gene: ASA_0719: putative long-chain-fatty-acid--CoA ligase |
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putative long-chain-fatty-acid--CoA ligase |
| CRON 7. | |||||||
| fabA |
Gene: Ping_1982: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60) |
Gene: PCNPT3_07260: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60) |
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Moritella sp. PE36 Site: position = -49 score = 5.96505 sequence = GGCGTACAGATGTACGCT Gene: PE36_11777: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60) |
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Aeromonas hydrophila subsp. hydrophila ATCC 7966 Site: position = -57 score = 6.13971 sequence = AGCGAACAACTGTACGCT Gene: AHA_2280: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60) |
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Aeromonas salmonicida subsp. salmonicida A449 Site: position = -57 score = 5.86866 sequence = AGCGCACAAGTGTACGCT Gene: ASA_2000: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60) |
Gene: Tola_1422: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60) |
3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60) |
| CRON 8. | |||||||
| hyIII |
Gene: Ping_1130: COG1272: Predicted membrane protein hemolysin III homolog |
|
*
Moritella sp. PE36 Site: position = -51 score = 6.41738 sequence = AGCGTACACTTGTACGCT Gene: PE36_03571: COG1272: Predicted membrane protein hemolysin III homolog |
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Aeromonas hydrophila subsp. hydrophila ATCC 7966 Site: position = -64 score = 5.54045 sequence = AGCTAACACTTGTACTCT Gene: AHA_3493: COG1272: Predicted membrane protein hemolysin III homolog |
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Aeromonas salmonicida subsp. salmonicida A449 Site: position = -64 score = 5.54045 sequence = AGCTAACACTTGTACTCT Gene: ASA_0824: COG1272: Predicted membrane protein hemolysin III homolog |
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COG1272: Predicted membrane protein hemolysin III homolog |
| CRON 9. | |||||||
| OLE1 |
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Psychromonas ingrahamii 37 Site: position = -56 score = 5.37784 sequence = GGTGTACATCTGTACGCT Gene: Ping_1494: Fatty acid desaturase (EC 1.14.19.1) |
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Moritella sp. PE36 Site: position = -60 score = 5.77038 sequence = AGCTTACACTTGTGCGCT Gene: PE36_01362: Fatty acid desaturase (EC 1.14.19.1) |
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Aeromonas hydrophila subsp. hydrophila ATCC 7966 Site: position = -35 score = 5.3758 sequence = GGCGCACAGCTGTTCGCT Gene: AHA_0366: Fatty acid desaturase (EC 1.14.19.1) |
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Aeromonas salmonicida subsp. salmonicida A449 Site: position = -35 score = 5.3758 sequence = GGCGCACAGCTGTTCGCT Gene: ASA_3966: Fatty acid desaturase (EC 1.14.19.1) |
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Fatty acid desaturase (EC 1.14.19.1) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |