Regulog NagR - Xanthomonadales

Properties
Regulator type:	Transcription factor
Regulator family:	LacI
Regulation mode:	repressor
Biological process:	N-acetylglucosamine utilization
Effector:	N-acetylglucosamine
Phylum:	Proteobacteria/gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 17 sites [see more]

Member of regulog collections

By taxonomy - Xanthomonadales
By trascription factor - NagR
By TF family - LacI
By effector - N-acetylglucosamine
By pathway - N-acetylglucosamine utilization

Statistics of regulated genes
Genome	Genes	Operons
Xylella fastidiosa 9a5c	6	2
Xanthomonas axonopodis pv. citri str. 306	6	5
Xanthomonas campestris pv. campestris str. ATCC 33913	7	6
Stenotrophomonas maltophilia K279a	9	4

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes					Function

CRON 1.
nixD	Xylella fastidiosa 9a5c Gene: XF2713: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor	* Xanthomonas axonopodis pv. citri str. 306 Site: position = -352 score = 5.62505 sequence = GTTGACAACGCTGTCAGG Gene: XAC3071: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor	* Xanthomonas campestris pv. campestris str. ATCC 33913 Site: position = -355 score = 5.95923 sequence = GTTGACAACGCTGTCAAC Gene: XCC2887: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor	Stenotrophomonas maltophilia K279a	N-acetylglucosamine-regulated TonB-dependent outer membrane receptor

CRON 2.
nagK2	* Xylella fastidiosa 9a5c Site: position = -68 score = 5.70991 sequence = ATTGATACCGTTGTCATC Gene: XF1460: Predicted N-acetylglucosamine kinase, glucokinase-like (EC 2.7.1.59)	2 Xanthomonas axonopodis pv. citri str. 306* Site: position = -82 score = 5.78807 sequence = ATTGACATCGTTGTCACC Gene: XAC3120: Predicted N-acetylglucosamine kinase, glucokinase-like (EC 2.7.1.59) Site: position = -80 score = 5.6685 sequence = GCTGACAACGTTGTCTAC Gene: XAC3070: Predicted N-acetylglucosamine kinase, glucokinase-like (EC 2.7.1.59)	2 Xanthomonas campestris pv. campestris str. ATCC 33913* Site: position = -81 score = 5.6685 sequence = GCTGACAACGTTGTCTAC Gene: XCC2886: Predicted N-acetylglucosamine kinase, glucokinase-like (EC 2.7.1.59) Site: position = -83 score = 6.19809 sequence = ATTGACAGCGTTGTCATC Gene: XCC2943: Predicted N-acetylglucosamine kinase, glucokinase-like (EC 2.7.1.59)	* Stenotrophomonas maltophilia K279a Site: position = -89 score = 5.74666 sequence = GTTGACATCGTTGTCAGC Gene: Smlt4025: Predicted N-acetylglucosamine kinase, glucokinase-like (EC 2.7.1.59)	Predicted N-acetylglucosamine kinase, glucokinase-like (EC 2.7.1.59)
nixC	Xylella fastidiosa 9a5c	Xanthomonas axonopodis pv. citri str. 306 Gene: XAC3121: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor	Xanthomonas campestris pv. campestris str. ATCC 33913 Gene: XCC2944: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor	Stenotrophomonas maltophilia K279a Gene: Smlt4026: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor	N-acetylglucosamine-regulated TonB-dependent outer membrane receptor
hex	Xylella fastidiosa 9a5c Gene: XF0847: Beta-hexosaminidase (EC 3.2.1.52)	Xanthomonas axonopodis pv. citri str. 306 Gene: XAC3074: Beta-hexosaminidase (EC 3.2.1.52)	Xanthomonas campestris pv. campestris str. ATCC 33913 Gene: XCC2890: Beta-hexosaminidase (EC 3.2.1.52)	Stenotrophomonas maltophilia K279a Gene: Smlt4027: Beta-hexosaminidase (EC 3.2.1.52)	Beta-hexosaminidase (EC 3.2.1.52)

CRON 3.
XF1461	* Xylella fastidiosa 9a5c Site: position = -298 score = 5.70991 sequence = GATGACAACGGTATCAAT Gene: XF1461: hypothetical protein	Xanthomonas axonopodis pv. citri str. 306	Xanthomonas campestris pv. campestris str. ATCC 33913	Stenotrophomonas maltophilia K279a	hypothetical protein
nagP	Xylella fastidiosa 9a5c Gene: XF1462: N-acetylglucosamine transporter, NagP	Xanthomonas axonopodis pv. citri str. 306 Gene: XAC0712: N-acetylglucosamine transporter, NagP	Xanthomonas campestris pv. campestris str. ATCC 33913 Gene: XCC3413: N-acetylglucosamine transporter, NagP	* Stenotrophomonas maltophilia K279a Site: position = -307 score = 5.74666 sequence = GCTGACAACGATGTCAAC Gene: Smlt4023: N-acetylglucosamine transporter, NagP	N-acetylglucosamine transporter, NagP
nagR	Xylella fastidiosa 9a5c Gene: XF1463: Transcriptional regulator of N-acetylglucosamine utilization, LacI family	Xanthomonas axonopodis pv. citri str. 306 Gene: XAC0713: Transcriptional regulator of N-acetylglucosamine utilization, LacI family	Xanthomonas campestris pv. campestris str. ATCC 33913 Gene: XCC3412: Transcriptional regulator of N-acetylglucosamine utilization, LacI family	Stenotrophomonas maltophilia K279a Gene: Smlt4022: Transcriptional regulator of N-acetylglucosamine utilization, LacI family	Transcriptional regulator of N-acetylglucosamine utilization, LacI family
nagB2	Xylella fastidiosa 9a5c Gene: XF1464: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6)	Xanthomonas axonopodis pv. citri str. 306 Gene: XAC0714: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6)	Xanthomonas campestris pv. campestris str. ATCC 33913 Gene: XCC3411: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6)	Stenotrophomonas maltophilia K279a Gene: Smlt4021: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6)	Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6)
nagA	Xylella fastidiosa 9a5c Gene: XF1465: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)	Xanthomonas axonopodis pv. citri str. 306 Gene: XAC0715: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)	Xanthomonas campestris pv. campestris str. ATCC 33913 Gene: XCC3410: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)	Stenotrophomonas maltophilia K279a Gene: Smlt4020: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)	N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)

CRON 4.
naxA	Xylella fastidiosa 9a5c Gene: XF2137: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor	* Xanthomonas axonopodis pv. citri str. 306 Site: position = -177 score = 5.65397 sequence = GATGACAACGTTGCCAGT Gene: XAC3168: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor	* Xanthomonas campestris pv. campestris str. ATCC 33913 Site: position = -178 score = 5.35022 sequence = GATGACAACGATGGCACT Gene: XCC3045: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor	* Stenotrophomonas maltophilia K279a Site: position = -94 score = 5.66646 sequence = ATTGACAGCGTTGTCAGG Gene: Smlt2566: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor	N-acetylglucosamine-regulated TonB-dependent outer membrane receptor

CRON 5.
nixA	Xylella fastidiosa 9a5c	Xanthomonas axonopodis pv. citri str. 306 Gene: XAC0716: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor	* Xanthomonas campestris pv. campestris str. ATCC 33913 Site: position = -340 score = 5.56221 sequence = GCTGATAACGTTGTCAGC Gene: XCC3408: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor	Stenotrophomonas maltophilia K279a	N-acetylglucosamine-regulated TonB-dependent outer membrane receptor

CRON 6.
nixB	Xylella fastidiosa 9a5c	* Xanthomonas axonopodis pv. citri str. 306 Site: position = -160 score = 5.74666 sequence = GTTGACACCGATGTCATC Gene: XAC0544: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor	* Xanthomonas campestris pv. campestris str. ATCC 33913 Site: position = -161 score = 5.74666 sequence = GTTGACACCGATGTCATC Gene: XCC0531: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor	Stenotrophomonas maltophilia K279a	N-acetylglucosamine-regulated TonB-dependent outer membrane receptor

CRON 7.
chiA	Xylella fastidiosa 9a5c	Xanthomonas axonopodis pv. citri str. 306	Xanthomonas campestris pv. campestris str. ATCC 33913	* Stenotrophomonas maltophilia K279a Site: position = -155 score = 5.63316 sequence = GATGACAACGTTGTCCCC Gene: Smlt0682: Chitinase (EC 3.2.1.14)	Chitinase (EC 3.2.1.14)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog NagR - Xanthomonadales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --