Regulog NagR - Xanthomonadales
| Regulator type: | Transcription factor |
| Regulator family: | LacI |
| Regulation mode: | repressor |
| Biological process: | N-acetylglucosamine utilization |
| Effector: | N-acetylglucosamine |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Xanthomonadales
- By trascription factor - NagR
- By TF family - LacI
- By effector - N-acetylglucosamine
- By pathway - N-acetylglucosamine utilization
| Genome | Genes | Operons |
|---|---|---|
| Xylella fastidiosa 9a5c | 6 | 2 |
| Xanthomonas axonopodis pv. citri str. 306 | 6 | 5 |
| Xanthomonas campestris pv. campestris str. ATCC 33913 | 7 | 6 |
| Stenotrophomonas maltophilia K279a | 9 | 4 |
| Genes | Function | ||||
|---|---|---|---|---|---|
| CRON 1. | |||||
| nixD |
Gene: XF2713: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor |
*
Xanthomonas axonopodis pv. citri str. 306 Site: position = -352 score = 5.62505 sequence = GTTGACAACGCTGTCAGG Gene: XAC3071: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor |
*
Xanthomonas campestris pv. campestris str. ATCC 33913 Site: position = -355 score = 5.95923 sequence = GTTGACAACGCTGTCAAC Gene: XCC2887: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor |
|
N-acetylglucosamine-regulated TonB-dependent outer membrane receptor |
| CRON 2. | |||||
| nagK2 |
*
Xylella fastidiosa 9a5c Site: position = -68 score = 5.70991 sequence = ATTGATACCGTTGTCATC Gene: XF1460: Predicted N-acetylglucosamine kinase, glucokinase-like (EC 2.7.1.59) |
*2
Xanthomonas axonopodis pv. citri str. 306 Site: position = -82 score = 5.78807 sequence = ATTGACATCGTTGTCACC Gene: XAC3120: Predicted N-acetylglucosamine kinase, glucokinase-like (EC 2.7.1.59) Site: position = -80 score = 5.6685 sequence = GCTGACAACGTTGTCTAC Gene: XAC3070: Predicted N-acetylglucosamine kinase, glucokinase-like (EC 2.7.1.59) |
*2
Xanthomonas campestris pv. campestris str. ATCC 33913 Site: position = -81 score = 5.6685 sequence = GCTGACAACGTTGTCTAC Gene: XCC2886: Predicted N-acetylglucosamine kinase, glucokinase-like (EC 2.7.1.59) Site: position = -83 score = 6.19809 sequence = ATTGACAGCGTTGTCATC Gene: XCC2943: Predicted N-acetylglucosamine kinase, glucokinase-like (EC 2.7.1.59) |
*
Stenotrophomonas maltophilia K279a Site: position = -89 score = 5.74666 sequence = GTTGACATCGTTGTCAGC Gene: Smlt4025: Predicted N-acetylglucosamine kinase, glucokinase-like (EC 2.7.1.59) |
Predicted N-acetylglucosamine kinase, glucokinase-like (EC 2.7.1.59) |
| nixC |
|
Gene: XAC3121: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor |
Gene: XCC2944: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor |
Gene: Smlt4026: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor |
N-acetylglucosamine-regulated TonB-dependent outer membrane receptor |
| hex |
Gene: XF0847: Beta-hexosaminidase (EC 3.2.1.52) |
Gene: XAC3074: Beta-hexosaminidase (EC 3.2.1.52) |
Gene: XCC2890: Beta-hexosaminidase (EC 3.2.1.52) |
Gene: Smlt4027: Beta-hexosaminidase (EC 3.2.1.52) |
Beta-hexosaminidase (EC 3.2.1.52) |
| CRON 3. | |||||
| XF1461 |
*
Xylella fastidiosa 9a5c Site: position = -298 score = 5.70991 sequence = GATGACAACGGTATCAAT Gene: XF1461: hypothetical protein |
|
|
|
hypothetical protein |
| nagP |
Gene: XF1462: N-acetylglucosamine transporter, NagP |
Gene: XAC0712: N-acetylglucosamine transporter, NagP |
Gene: XCC3413: N-acetylglucosamine transporter, NagP |
*
Stenotrophomonas maltophilia K279a Site: position = -307 score = 5.74666 sequence = GCTGACAACGATGTCAAC Gene: Smlt4023: N-acetylglucosamine transporter, NagP |
N-acetylglucosamine transporter, NagP |
| nagR |
Gene: XF1463: Transcriptional regulator of N-acetylglucosamine utilization, LacI family |
Gene: XAC0713: Transcriptional regulator of N-acetylglucosamine utilization, LacI family |
Gene: XCC3412: Transcriptional regulator of N-acetylglucosamine utilization, LacI family |
Gene: Smlt4022: Transcriptional regulator of N-acetylglucosamine utilization, LacI family |
Transcriptional regulator of N-acetylglucosamine utilization, LacI family |
| nagB2 |
Gene: XF1464: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) |
Gene: XAC0714: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) |
Gene: XCC3411: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) |
Gene: Smlt4021: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) |
Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) |
| nagA |
Gene: XF1465: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) |
Gene: XAC0715: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) |
Gene: XCC3410: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) |
Gene: Smlt4020: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) |
N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) |
| CRON 4. | |||||
| naxA |
Gene: XF2137: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor |
*
Xanthomonas axonopodis pv. citri str. 306 Site: position = -177 score = 5.65397 sequence = GATGACAACGTTGCCAGT Gene: XAC3168: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor |
*
Xanthomonas campestris pv. campestris str. ATCC 33913 Site: position = -178 score = 5.35022 sequence = GATGACAACGATGGCACT Gene: XCC3045: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor |
*
Stenotrophomonas maltophilia K279a Site: position = -94 score = 5.66646 sequence = ATTGACAGCGTTGTCAGG Gene: Smlt2566: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor |
N-acetylglucosamine-regulated TonB-dependent outer membrane receptor |
| CRON 5. | |||||
| nixA |
|
Gene: XAC0716: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor |
*
Xanthomonas campestris pv. campestris str. ATCC 33913 Site: position = -340 score = 5.56221 sequence = GCTGATAACGTTGTCAGC Gene: XCC3408: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor |
|
N-acetylglucosamine-regulated TonB-dependent outer membrane receptor |
| CRON 6. | |||||
| nixB |
|
*
Xanthomonas axonopodis pv. citri str. 306 Site: position = -160 score = 5.74666 sequence = GTTGACACCGATGTCATC Gene: XAC0544: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor |
*
Xanthomonas campestris pv. campestris str. ATCC 33913 Site: position = -161 score = 5.74666 sequence = GTTGACACCGATGTCATC Gene: XCC0531: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor |
|
N-acetylglucosamine-regulated TonB-dependent outer membrane receptor |
| CRON 7. | |||||
| chiA |
|
|
|
*
Stenotrophomonas maltophilia K279a Site: position = -155 score = 5.63316 sequence = GATGACAACGTTGTCCCC Gene: Smlt0682: Chitinase (EC 3.2.1.14) |
Chitinase (EC 3.2.1.14) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |