Regulog Cobalamin - Corynebacteriaceae
| Regulator type: | RNA regulatory element |
| Name: | Cobalamin |
| RFAM: | RF00174 |
| Regulation mode: | |
| Biological process: | Cobalamin biosynthesis |
| Effector: | Adenosylcobalamin |
| Phylum: | Actinobacteria |
Member of regulog collections
- By taxonomy - Corynebacteriaceae
- By RNA motif - Cobalamin
- By effector - Adenosylcobalamin
- By pathway - Cobalamin biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Corynebacterium glutamicum ATCC 13032 | 5 | 1 |
| Corynebacterium efficiens YS-314 | ||
| Corynebacterium diphtheriae NCTC 13129 | 3 | 1 |
| Corynebacterium aurimucosum ATCC 700975 | ||
| Corynebacterium jeikeium K411 | ||
| Corynebacterium urealyticum DSM 7109 | ||
| Corynebacterium amycolatum SK46 | 5 | 2 |
| Corynebacterium kroppenstedtii DSM 44385 | 4 | 2 |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| metE |
Gene: cg1290: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
Gene: CE1209: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
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Gene: jk0234: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
Gene: cur_1766: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
*
Corynebacterium amycolatum SK46 Site: position = -218 score = 34.97 sequence = GTGTGTTTTGAGCTT... Gene: CORAM0001_1322: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
*
Corynebacterium kroppenstedtii DSM 44385 Site: position = -344 score = 55.43 sequence = CGATAAGTAATGCGA... Gene: ckrop_1726: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
| CRON 2. | |||||||||
| btuF |
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Gene: DIP1086: Vitamin B12 ABC transporter, B12-binding component BtuF |
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Gene: cur_1342: Vitamin B12 ABC transporter, B12-binding component BtuF |
Gene: CORAM0001_0685: Vitamin B12 ABC transporter, B12-binding component BtuF |
*2
Corynebacterium kroppenstedtii DSM 44385 Site: position = -136 score = 36.17 sequence = GGAATGCAGTGCGAA... Gene: ckrop_0414: Vitamin B12 ABC transporter, B12-binding component BtuF Gene: ckrop_1967: Vitamin B12 ABC transporter, B12-binding component BtuF |
Vitamin B12 ABC transporter, B12-binding component BtuF |
| btuC |
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Corynebacterium diphtheriae NCTC 13129 Site: position = -252 score = 84.29 sequence = GTGTTACACATTGAT... Gene: DIP1084: Vitamin B12 ABC transporter, permease component BtuC |
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Gene: CORAM0001_0683: Vitamin B12 ABC transporter, permease component BtuC |
2
Corynebacterium kroppenstedtii DSM 44385 Gene: ckrop_0415: Vitamin B12 ABC transporter, permease component BtuC Gene: ckrop_1965: Vitamin B12 ABC transporter, permease component BtuC |
Vitamin B12 ABC transporter, permease component BtuC |
| btuD |
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Gene: DIP1085: Vitamin B12 ABC transporter, ATPase component BtuD / Adenosylcobinamide amidohydrolase (EC 3.5.1.90) |
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Gene: CORAM0001_0684: Vitamin B12 ABC transporter, ATPase component BtuD / Adenosylcobinamide amidohydrolase (EC 3.5.1.90) |
2
Corynebacterium kroppenstedtii DSM 44385 Gene: ckrop_0416: Vitamin B12 ABC transporter, ATPase component BtuD / Adenosylcobinamide amidohydrolase (EC 3.5.1.90) Gene: ckrop_1966: Vitamin B12 ABC transporter, ATPase component BtuD / Adenosylcobinamide amidohydrolase (EC 3.5.1.90) |
Vitamin B12 ABC transporter, ATPase component BtuD / Adenosylcobinamide amidohydrolase (EC 3.5.1.90) |
| CRON 3. | |||||||||
| cg0625 |
*
Corynebacterium glutamicum ATCC 13032 Site: position = -217 score = 25.7 sequence = CAGGGGAATTTCGGT... Gene: cg0625: Hypothetical protein |
Gene: CE0547: Hypothetical protein |
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Hypothetical protein |
| cg0624 |
Gene: cg0624: Hypothetical protein |
Gene: CE0546: Hypothetical protein |
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Hypothetical protein |
| cbrV |
Gene: cg0623: Transmembrane component CbrV of energizing module of predicted cobalamin ECF transporter |
Gene: CE0545: Transmembrane component CbrV of energizing module of predicted cobalamin ECF transporter |
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Transmembrane component CbrV of energizing module of predicted cobalamin ECF transporter |
| cbrU |
Gene: cg0622: Duplicated ATPase component CbrU of energizing module of predicted cobalamin ECF transporter |
Gene: CE0544: Duplicated ATPase component CbrU of energizing module of predicted cobalamin ECF transporter |
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Duplicated ATPase component CbrU of energizing module of predicted cobalamin ECF transporter |
| cbrT |
Gene: cg0621: Substrate-specific component CbrT of predicted cobalamin ECF transporter |
Gene: CE0543: Substrate-specific component CbrT of predicted cobalamin ECF transporter |
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Substrate-specific component CbrT of predicted cobalamin ECF transporter |
| CRON 4. | |||||||||
| cbiM |
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*
Corynebacterium amycolatum SK46 Site: position = -325 score = 43.86 sequence = ATTCTGAGACGTGAT... Gene: CORAM0001_2224: Substrate-specific component CbiM of cobalt ECF transporter |
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Substrate-specific component CbiM of cobalt ECF transporter |
| cbiN |
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Gene: CORAM0001_2223: Additional substrate-specific component CbiN of cobalt ECF transporter |
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Additional substrate-specific component CbiN of cobalt ECF transporter |
| cbiQ |
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Gene: CORAM0001_2222: Transmembrane component CbiQ of energizing module of cobalt ECF transporter |
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Transmembrane component CbiQ of energizing module of cobalt ECF transporter |
| cbiO |
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Gene: CORAM0001_2221: ATPase component CbiO of energizing module of cobalt ECF transporter |
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ATPase component CbiO of energizing module of cobalt ECF transporter |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |