Regulog Cobalamin - Ralstonia

Properties
Regulator type:	RNA regulatory element
Name:	Cobalamin
RFAM:	RF00174
Regulation mode:
Biological process:	Cobalamin biosynthesis
Effector:	Adenosylcobalamin
Phylum:	Proteobacteria

Member of regulog collections

By taxonomy - Ralstonia
By RNA motif - Cobalamin
By effector - Adenosylcobalamin
By pathway - Cobalamin biosynthesis

Statistics of regulated genes
Genome	Genes	Operons
Ralstonia solanacearum GMI1000	10	2
Ralstonia pickettii 12J	7	1
Ralstonia metallidurans CH34	7	1
Ralstonia eutropha JMP134	7	1
Ralstonia eutropha H16	7	1
Cupriavidus taiwanensis	7	1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes							Function

CRON 1.
btuB	* Ralstonia solanacearum GMI1000 Site: position = -396 score = 48.99 sequence = GTTACACTCGCCGCG... Gene: RS02718: Outer membrane vitamin B12 receptor BtuB	* Ralstonia pickettii 12J Site: position = -389 score = 64.85 sequence = TTAAACTTCGCCCCG... Gene: Rpic_2667: Outer membrane vitamin B12 receptor BtuB	* Ralstonia metallidurans CH34 Site: position = -260 score = 45.08 sequence = TACACTCGCCCCCGT... Gene: Rmet_2789: Outer membrane vitamin B12 receptor BtuB	* Ralstonia eutropha JMP134 Site: position = -322 score = 47.69 sequence = CACTCGCGCACGTTC... Gene: Reut_A0654: Outer membrane vitamin B12 receptor BtuB	* Ralstonia eutropha H16 Site: position = -219 score = 24.08 sequence = ACCGGCCACACGCCA... Gene: H16_A2972: Outer membrane vitamin B12 receptor BtuB	* Cupriavidus taiwanensis Site: position = -163 score = 26.98 sequence = GACCGGCCACACGCC... Gene: RALTA_A2446: Outer membrane vitamin B12 receptor BtuB	Outer membrane vitamin B12 receptor BtuB
btuC	Ralstonia solanacearum GMI1000 Gene: RS02719: Vitamin B12 ABC transporter, permease component BtuC	Ralstonia pickettii 12J Gene: Rpic_2666: Vitamin B12 ABC transporter, permease component BtuC	Ralstonia metallidurans CH34 Gene: Rmet_2788: Vitamin B12 ABC transporter, permease component BtuC	Ralstonia eutropha JMP134 Gene: Reut_A0655: Vitamin B12 ABC transporter, permease component BtuC	Ralstonia eutropha H16 Gene: H16_A2971: Vitamin B12 ABC transporter, permease component BtuC	Cupriavidus taiwanensis Gene: RALTA_A2445: Vitamin B12 ABC transporter, permease component BtuC	Vitamin B12 ABC transporter, permease component BtuC
btuD	Ralstonia solanacearum GMI1000 Gene: RS02720: Vitamin B12 ABC transporter, ATPase component BtuD	Ralstonia pickettii 12J Gene: Rpic_2665: Vitamin B12 ABC transporter, ATPase component BtuD	Ralstonia metallidurans CH34 Gene: Rmet_2787: Vitamin B12 ABC transporter, ATPase component BtuD	Ralstonia eutropha JMP134 Gene: Reut_A0656: Vitamin B12 ABC transporter, ATPase component BtuD	Ralstonia eutropha H16 Gene: H16_A2970: Vitamin B12 ABC transporter, ATPase component BtuD	Cupriavidus taiwanensis Gene: RALTA_A2444: Vitamin B12 ABC transporter, ATPase component BtuD	Vitamin B12 ABC transporter, ATPase component BtuD
btuR	Ralstonia solanacearum GMI1000 Gene: RSp0616: Cob(I)alamin adenosyltransferase (EC 2.5.1.17)	Ralstonia pickettii 12J Gene: Rpic_2664: Cob(I)alamin adenosyltransferase (EC 2.5.1.17)	Ralstonia metallidurans CH34 Gene: Rmet_2786: Cob(I)alamin adenosyltransferase (EC 2.5.1.17)	Ralstonia eutropha JMP134 Gene: Reut_A0657: Cob(I)alamin adenosyltransferase (EC 2.5.1.17)	Ralstonia eutropha H16 Gene: H16_A2969: Cob(I)alamin adenosyltransferase (EC 2.5.1.17)	Cupriavidus taiwanensis Gene: RALTA_A2443: Cob(I)alamin adenosyltransferase (EC 2.5.1.17)	Cob(I)alamin adenosyltransferase (EC 2.5.1.17)
cobT	Ralstonia solanacearum GMI1000 Gene: RSc2397: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)	Ralstonia pickettii 12J Gene: Rpic_2663: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)	Ralstonia metallidurans CH34 Gene: Rmet_2785: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)	Ralstonia eutropha JMP134 Gene: Reut_A0658: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)	Ralstonia eutropha H16 Gene: H16_A2968: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)	Cupriavidus taiwanensis Gene: RALTA_A2442: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)	Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)
cobS	Ralstonia solanacearum GMI1000 Gene: RSc2396: Cobalamin synthase	Ralstonia pickettii 12J Gene: Rpic_2662: Cobalamin synthase	Ralstonia metallidurans CH34 Gene: Rmet_2784: Cobalamin synthase	Ralstonia eutropha JMP134 Gene: Reut_A0659: Cobalamin synthase	Ralstonia eutropha H16 Gene: H16_A2967: Cobalamin synthase	Cupriavidus taiwanensis Gene: RALTA_A2441: Cobalamin synthase	Cobalamin synthase
cobC	Ralstonia solanacearum GMI1000 Gene: RS02727: Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73)	Ralstonia pickettii 12J Gene: Rpic_2661: Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73)	Ralstonia metallidurans CH34 Gene: Rmet_2783: Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73)	Ralstonia eutropha JMP134 Gene: Reut_A0660: Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73)	Ralstonia eutropha H16 Gene: H16_A2966: Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73)	Cupriavidus taiwanensis Gene: RALTA_A2440: Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73)	Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73)

CRON 2.
hoxN	* Ralstonia solanacearum GMI1000 Site: position = -278 score = 121.48 sequence = CATCCCGCCTCACGA... Gene: RSp0628: HoxN/HupN/NixA family cobalt transporter	Ralstonia pickettii 12J	Ralstonia metallidurans CH34	Ralstonia eutropha JMP134	Ralstonia eutropha H16	Cupriavidus taiwanensis	HoxN/HupN/NixA family cobalt transporter
cbiW	Ralstonia solanacearum GMI1000 Gene: RS03740: Putative 2Fe-2S ferredoxin CbiW involved in B12 biosynthesis	Ralstonia pickettii 12J	Ralstonia metallidurans CH34	Ralstonia eutropha JMP134	Ralstonia eutropha H16	Cupriavidus taiwanensis	Putative 2Fe-2S ferredoxin CbiW involved in B12 biosynthesis
cobN	Ralstonia solanacearum GMI1000 Gene: RSp0626: CobN component of cobalt chelatase involved in B12 biosynthesis	Ralstonia pickettii 12J	Ralstonia metallidurans CH34	Ralstonia eutropha JMP134	Ralstonia eutropha H16	Cupriavidus taiwanensis	CobN component of cobalt chelatase involved in B12 biosynthesis
chlID	Ralstonia solanacearum GMI1000 Gene: RS03742: ChlI component of cobalt chelatase involved in B12 biosynthesis / ChlD component of cobalt chelatase involved in B12 biosynthesis	Ralstonia pickettii 12J	Ralstonia metallidurans CH34	Ralstonia eutropha JMP134	Ralstonia eutropha H16	Cupriavidus taiwanensis	ChlI component of cobalt chelatase involved in B12 biosynthesis / ChlD component of cobalt chelatase involved in B12 biosynthesis

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog Cobalamin - Ralstonia

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --