Regulog Cobalamin - Ralstonia
| Regulator type: | RNA regulatory element |
| Name: | Cobalamin |
| RFAM: | RF00174 |
| Regulation mode: | |
| Biological process: | Cobalamin biosynthesis |
| Effector: | Adenosylcobalamin |
| Phylum: | Proteobacteria |
Member of regulog collections
- By taxonomy - Ralstonia
- By RNA motif - Cobalamin
- By effector - Adenosylcobalamin
- By pathway - Cobalamin biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Ralstonia solanacearum GMI1000 | 10 | 2 |
| Ralstonia pickettii 12J | 7 | 1 |
| Ralstonia metallidurans CH34 | 7 | 1 |
| Ralstonia eutropha JMP134 | 7 | 1 |
| Ralstonia eutropha H16 | 7 | 1 |
| Cupriavidus taiwanensis | 7 | 1 |
| Genes | Function | ||||||
|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||
| btuB |
*
Ralstonia solanacearum GMI1000 Site: position = -396 score = 48.99 sequence = GTTACACTCGCCGCG... Gene: RS02718: Outer membrane vitamin B12 receptor BtuB |
*
Ralstonia pickettii 12J Site: position = -389 score = 64.85 sequence = TTAAACTTCGCCCCG... Gene: Rpic_2667: Outer membrane vitamin B12 receptor BtuB |
*
Ralstonia metallidurans CH34 Site: position = -260 score = 45.08 sequence = TACACTCGCCCCCGT... Gene: Rmet_2789: Outer membrane vitamin B12 receptor BtuB |
*
Ralstonia eutropha JMP134 Site: position = -322 score = 47.69 sequence = CACTCGCGCACGTTC... Gene: Reut_A0654: Outer membrane vitamin B12 receptor BtuB |
*
Ralstonia eutropha H16 Site: position = -219 score = 24.08 sequence = ACCGGCCACACGCCA... Gene: H16_A2972: Outer membrane vitamin B12 receptor BtuB |
*
Cupriavidus taiwanensis Site: position = -163 score = 26.98 sequence = GACCGGCCACACGCC... Gene: RALTA_A2446: Outer membrane vitamin B12 receptor BtuB |
Outer membrane vitamin B12 receptor BtuB |
| btuC |
Gene: RS02719: Vitamin B12 ABC transporter, permease component BtuC |
Gene: Rpic_2666: Vitamin B12 ABC transporter, permease component BtuC |
Gene: Rmet_2788: Vitamin B12 ABC transporter, permease component BtuC |
Gene: Reut_A0655: Vitamin B12 ABC transporter, permease component BtuC |
Gene: H16_A2971: Vitamin B12 ABC transporter, permease component BtuC |
Gene: RALTA_A2445: Vitamin B12 ABC transporter, permease component BtuC |
Vitamin B12 ABC transporter, permease component BtuC |
| btuD |
Gene: RS02720: Vitamin B12 ABC transporter, ATPase component BtuD |
Gene: Rpic_2665: Vitamin B12 ABC transporter, ATPase component BtuD |
Gene: Rmet_2787: Vitamin B12 ABC transporter, ATPase component BtuD |
Gene: Reut_A0656: Vitamin B12 ABC transporter, ATPase component BtuD |
Gene: H16_A2970: Vitamin B12 ABC transporter, ATPase component BtuD |
Gene: RALTA_A2444: Vitamin B12 ABC transporter, ATPase component BtuD |
Vitamin B12 ABC transporter, ATPase component BtuD |
| btuR |
Gene: RSp0616: Cob(I)alamin adenosyltransferase (EC 2.5.1.17) |
Gene: Rpic_2664: Cob(I)alamin adenosyltransferase (EC 2.5.1.17) |
Gene: Rmet_2786: Cob(I)alamin adenosyltransferase (EC 2.5.1.17) |
Gene: Reut_A0657: Cob(I)alamin adenosyltransferase (EC 2.5.1.17) |
Gene: H16_A2969: Cob(I)alamin adenosyltransferase (EC 2.5.1.17) |
Gene: RALTA_A2443: Cob(I)alamin adenosyltransferase (EC 2.5.1.17) |
Cob(I)alamin adenosyltransferase (EC 2.5.1.17) |
| cobT |
Gene: RSc2397: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) |
Gene: Rpic_2663: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) |
Gene: Rmet_2785: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) |
Gene: Reut_A0658: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) |
Gene: H16_A2968: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) |
Gene: RALTA_A2442: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) |
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) |
| cobS |
Gene: RSc2396: Cobalamin synthase |
Gene: Rpic_2662: Cobalamin synthase |
Gene: Rmet_2784: Cobalamin synthase |
Gene: Reut_A0659: Cobalamin synthase |
Gene: H16_A2967: Cobalamin synthase |
Gene: RALTA_A2441: Cobalamin synthase |
Cobalamin synthase |
| cobC |
Gene: RS02727: Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73) |
Gene: Rpic_2661: Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73) |
Gene: Rmet_2783: Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73) |
Gene: Reut_A0660: Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73) |
Gene: H16_A2966: Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73) |
Gene: RALTA_A2440: Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73) |
Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73) |
| CRON 2. | |||||||
| hoxN |
*
Ralstonia solanacearum GMI1000 Site: position = -278 score = 121.48 sequence = CATCCCGCCTCACGA... Gene: RSp0628: HoxN/HupN/NixA family cobalt transporter |
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HoxN/HupN/NixA family cobalt transporter |
| cbiW |
Gene: RS03740: Putative 2Fe-2S ferredoxin CbiW involved in B12 biosynthesis |
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Putative 2Fe-2S ferredoxin CbiW involved in B12 biosynthesis |
| cobN |
Gene: RSp0626: CobN component of cobalt chelatase involved in B12 biosynthesis |
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CobN component of cobalt chelatase involved in B12 biosynthesis |
| chlID |
Gene: RS03742: ChlI component of cobalt chelatase involved in B12 biosynthesis / ChlD component of cobalt chelatase involved in B12 biosynthesis |
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ChlI component of cobalt chelatase involved in B12 biosynthesis / ChlD component of cobalt chelatase involved in B12 biosynthesis |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |