Regulog TPP - Thermotogales

Properties
Regulator type:	RNA regulatory element
Name:	TPP
RFAM:	RF00059
Regulation mode:
Biological process:	Thiamine biosynthesis
Effector:	Thiamine pyrophosphate
Phylum:	Thermotogae

Member of regulog collections

By taxonomy - Thermotogales
By RNA motif - TPP
By effector - Thiamine pyrophosphate
By pathway - Thiamine biosynthesis

Statistics of regulated genes
Genome	Genes	Operons
Fervidobacterium nodosum Rt17-B1	5	2
Petrotoga mobilis SJ95	2	1
Thermosipho africanus TCF52B	6	2
Thermosipho melanesiensis BI429	6	3
Thermotoga lettingae TMO	6	2
Thermotoga maritima MSB8	4	1
Thermotoga naphthophila RKU-10	4	1
Thermotoga neapolitana DSM 4359	4	1
Thermotoga petrophila RKU-1	4	1
Thermotoga sp. RQ2	4	1
Thermotogales bacterium TBF 19.5.1	2	1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes												Function

CRON 1.
thiB	* Fervidobacterium nodosum Rt17-B1 Site: position = -189 score = 83.58 sequence = AATGCCTGGAGGGGA... Gene: Fnod_0311: Thiamin ABC transporter, substrate-binding component	* Petrotoga mobilis SJ95 Site: position = -238 score = 68.37 sequence = AACAAATGGCCAGGG... Gene: Pmob_0008: Thiamin ABC transporter, substrate-binding component	* Thermosipho africanus TCF52B Site: position = -151 score = 82.7 sequence = AATATCCCAAGGGGA... Gene: THA_66: Thiamin ABC transporter, substrate-binding component	* Thermosipho melanesiensis BI429 Site: position = -143 score = 79.75 sequence = AATTACCCAAGGGGA... Gene: Tmel_1807: Thiamin ABC transporter, substrate-binding component	* Thermotoga lettingae TMO Site: position = -153 score = 73.54 sequence = TATTTGTGCAGGGGA... Gene: Tlet_1299: Thiamin ABC transporter, substrate-binding component	Thermotoga maritima MSB8	Thermotoga naphthophila RKU-10	Thermotoga neapolitana DSM 4359	Thermotoga petrophila RKU-1	Thermotoga sp. RQ2	* Thermotogales bacterium TBF 19.5.1 Site: position = -141 score = 76.39 sequence = ATGGAACTGCCGGGG... Gene: Kole_2154: Thiamin ABC transporter, substrate-binding component	Thiamin ABC transporter, substrate-binding component
thiP	Fervidobacterium nodosum Rt17-B1 Gene: Fnod_0487: Thiamin ABC transporter, transmembrane component	Petrotoga mobilis SJ95 Gene: Pmob_0007: Thiamin ABC transporter, transmembrane component	Thermosipho africanus TCF52B Gene: THA_68: Thiamin ABC transporter, transmembrane component	Thermosipho melanesiensis BI429 Gene: Tmel_1808: Thiamin ABC transporter, transmembrane component	Thermotoga lettingae TMO Gene: Tlet_1300: Thiamin ABC transporter, transmembrane component	Thermotoga maritima MSB8	Thermotoga naphthophila RKU-10	Thermotoga neapolitana DSM 4359	Thermotoga petrophila RKU-1	Thermotoga sp. RQ2	Thermotogales bacterium TBF 19.5.1 Gene: Kole_2153: Thiamin ABC transporter, transmembrane component	Thiamin ABC transporter, transmembrane component

CRON 2.
thi4	* Fervidobacterium nodosum Rt17-B1 Site: position = -216 score = 79.47 sequence = ATATTCTCCCAAGGG... Gene: Fnod_1422: Thiazole synthase Thi4	Petrotoga mobilis SJ95	* Thermosipho africanus TCF52B Site: position = -180 score = 79.47 sequence = AAAATCCCAAGGGGA... Gene: THA_1798: Thiazole synthase Thi4	* Thermosipho melanesiensis BI429 Site: position = -174 score = 76.58 sequence = GAAAACCCGAGGGGA... Gene: Tmel_1590: Thiazole synthase Thi4	* Thermotoga lettingae TMO Site: position = -163 score = 77.48 sequence = CTTTCTCCATGGGGA... Gene: Tlet_1750: Thiazole synthase Thi4	* Thermotoga maritima MSB8 Site: position = -154 score = 69.75 sequence = CCTTCCCCAGGGGGA... Gene: TM0787: Thiazole synthase Thi4	* Thermotoga naphthophila RKU-10 Site: position = -162 score = 69.75 sequence = AACCTTCCCCAGGGG... Gene: Tnap_0143: Thiazole synthase Thi4	* Thermotoga neapolitana DSM 4359 Site: position = -163 score = 76.02 sequence = ACCCTTCCCCAGGGG... Gene: CTN_1791: Thiazole synthase Thi4	* Thermotoga petrophila RKU-1 Site: position = -162 score = 69.75 sequence = AACCTTCCCCAGGGG... Gene: Tpet_0142: Thiazole synthase Thi4	* Thermotoga sp. RQ2 Site: position = -162 score = 69.75 sequence = AACCTTCCCCAGGGG... Gene: TRQ2_0140: Thiazole synthase Thi4	Thermotogales bacterium TBF 19.5.1	Thiazole synthase Thi4
thiC	Fervidobacterium nodosum Rt17-B1 Gene: Fnod_1421: Thiamin biosynthesis protein ThiC	Petrotoga mobilis SJ95	Thermosipho africanus TCF52B Gene: THA_1799: Thiamin biosynthesis protein ThiC	* Thermosipho melanesiensis BI429 Site: position = -181 score = 77.93 sequence = GAAAACCCGAGGGGA... Gene: Tmel_1592: Thiamin biosynthesis protein ThiC	Thermotoga lettingae TMO Gene: Tlet_1751: Thiamin biosynthesis protein ThiC	Thermotoga maritima MSB8 Gene: TM0788: Thiamin biosynthesis protein ThiC	Thermotoga naphthophila RKU-10 Gene: Tnap_0142: Thiamin biosynthesis protein ThiC	Thermotoga neapolitana DSM 4359 Gene: CTN_1790: Thiamin biosynthesis protein ThiC	Thermotoga petrophila RKU-1 Gene: Tpet_0141: Thiamin biosynthesis protein ThiC	Thermotoga sp. RQ2 Gene: TRQ2_0139: Thiamin biosynthesis protein ThiC	Thermotogales bacterium TBF 19.5.1	Thiamin biosynthesis protein ThiC
TM0789	Fervidobacterium nodosum Rt17-B1 Gene: Fnod_1420: Xylose isomerase domain-containing protein	Petrotoga mobilis SJ95	Thermosipho africanus TCF52B Gene: THA_1800: Xylose isomerase domain-containing protein	Thermosipho melanesiensis BI429 Gene: Tmel_1593: Xylose isomerase domain-containing protein	Thermotoga lettingae TMO Gene: Tlet_1752: Xylose isomerase domain-containing protein	Thermotoga maritima MSB8 Gene: TM0789: Xylose isomerase domain-containing protein	Thermotoga naphthophila RKU-10 Gene: Tnap_0141: Xylose isomerase domain-containing protein	Thermotoga neapolitana DSM 4359 Gene: CTN_1789: Xylose isomerase domain-containing protein	Thermotoga petrophila RKU-1 Gene: Tpet_0140: Xylose isomerase domain-containing protein	Thermotoga sp. RQ2 Gene: TRQ2_0138: Xylose isomerase domain-containing protein	Thermotogales bacterium TBF 19.5.1	Xylose isomerase domain-containing protein
thiDN	Fervidobacterium nodosum Rt17-B1 Gene: Fnod_1419: Phosphomethylpyrimidine kinase (EC 2.7.4.7) / Thiamin-phosphate synthase ThiN (EC 2.5.1.3)	Petrotoga mobilis SJ95	Thermosipho africanus TCF52B Gene: THA_1801: Phosphomethylpyrimidine kinase (EC 2.7.4.7) / Thiamin-phosphate synthase ThiN (EC 2.5.1.3)	Thermosipho melanesiensis BI429 Gene: Tmel_1594: Phosphomethylpyrimidine kinase (EC 2.7.4.7) / Thiamin-phosphate synthase ThiN (EC 2.5.1.3)	Thermotoga lettingae TMO Gene: Tlet_1753: Phosphomethylpyrimidine kinase (EC 2.7.4.7) / Thiamin-phosphate synthase ThiN (EC 2.5.1.3)	Thermotoga maritima MSB8 Gene: TM0790: Phosphomethylpyrimidine kinase (EC 2.7.4.7) / Thiamin-phosphate synthase ThiN (EC 2.5.1.3)	Thermotoga naphthophila RKU-10 Gene: Tnap_0140: Phosphomethylpyrimidine kinase (EC 2.7.4.7) / Thiamin-phosphate synthase ThiN (EC 2.5.1.3)	Thermotoga neapolitana DSM 4359 Gene: CTN_1788: Phosphomethylpyrimidine kinase (EC 2.7.4.7) / Thiamin-phosphate synthase ThiN (EC 2.5.1.3)	Thermotoga petrophila RKU-1 Gene: Tpet_0139: Phosphomethylpyrimidine kinase (EC 2.7.4.7) / Thiamin-phosphate synthase ThiN (EC 2.5.1.3)	Thermotoga sp. RQ2 Gene: TRQ2_0137: Phosphomethylpyrimidine kinase (EC 2.7.4.7) / Thiamin-phosphate synthase ThiN (EC 2.5.1.3)	Thermotogales bacterium TBF 19.5.1	Phosphomethylpyrimidine kinase (EC 2.7.4.7) / Thiamin-phosphate synthase ThiN (EC 2.5.1.3)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog TPP - Thermotogales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --