Regulog TPP - Thermotogales
| Regulator type: | RNA regulatory element |
| Name: | TPP |
| RFAM: | RF00059 |
| Regulation mode: | |
| Biological process: | Thiamine biosynthesis |
| Effector: | Thiamine pyrophosphate |
| Phylum: | Thermotogae |
Member of regulog collections
- By taxonomy - Thermotogales
- By RNA motif - TPP
- By effector - Thiamine pyrophosphate
- By pathway - Thiamine biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Fervidobacterium nodosum Rt17-B1 | 5 | 2 |
| Petrotoga mobilis SJ95 | 2 | 1 |
| Thermosipho africanus TCF52B | 6 | 2 |
| Thermosipho melanesiensis BI429 | 6 | 3 |
| Thermotoga lettingae TMO | 6 | 2 |
| Thermotoga maritima MSB8 | 4 | 1 |
| Thermotoga naphthophila RKU-10 | 4 | 1 |
| Thermotoga neapolitana DSM 4359 | 4 | 1 |
| Thermotoga petrophila RKU-1 | 4 | 1 |
| Thermotoga sp. RQ2 | 4 | 1 |
| Thermotogales bacterium TBF 19.5.1 | 2 | 1 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| thiB |
*
Fervidobacterium nodosum Rt17-B1 Site: position = -189 score = 83.58 sequence = AATGCCTGGAGGGGA... Gene: Fnod_0311: Thiamin ABC transporter, substrate-binding component |
*
Petrotoga mobilis SJ95 Site: position = -238 score = 68.37 sequence = AACAAATGGCCAGGG... Gene: Pmob_0008: Thiamin ABC transporter, substrate-binding component |
*
Thermosipho africanus TCF52B Site: position = -151 score = 82.7 sequence = AATATCCCAAGGGGA... Gene: THA_66: Thiamin ABC transporter, substrate-binding component |
*
Thermosipho melanesiensis BI429 Site: position = -143 score = 79.75 sequence = AATTACCCAAGGGGA... Gene: Tmel_1807: Thiamin ABC transporter, substrate-binding component |
*
Thermotoga lettingae TMO Site: position = -153 score = 73.54 sequence = TATTTGTGCAGGGGA... Gene: Tlet_1299: Thiamin ABC transporter, substrate-binding component |
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|
*
Thermotogales bacterium TBF 19.5.1 Site: position = -141 score = 76.39 sequence = ATGGAACTGCCGGGG... Gene: Kole_2154: Thiamin ABC transporter, substrate-binding component |
Thiamin ABC transporter, substrate-binding component |
| thiP |
Gene: Fnod_0487: Thiamin ABC transporter, transmembrane component |
Gene: Pmob_0007: Thiamin ABC transporter, transmembrane component |
Gene: THA_68: Thiamin ABC transporter, transmembrane component |
Gene: Tmel_1808: Thiamin ABC transporter, transmembrane component |
Gene: Tlet_1300: Thiamin ABC transporter, transmembrane component |
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Gene: Kole_2153: Thiamin ABC transporter, transmembrane component |
Thiamin ABC transporter, transmembrane component |
| CRON 2. | ||||||||||||
| thi4 |
*
Fervidobacterium nodosum Rt17-B1 Site: position = -216 score = 79.47 sequence = ATATTCTCCCAAGGG... Gene: Fnod_1422: Thiazole synthase Thi4 |
|
*
Thermosipho africanus TCF52B Site: position = -180 score = 79.47 sequence = AAAATCCCAAGGGGA... Gene: THA_1798: Thiazole synthase Thi4 |
*
Thermosipho melanesiensis BI429 Site: position = -174 score = 76.58 sequence = GAAAACCCGAGGGGA... Gene: Tmel_1590: Thiazole synthase Thi4 |
*
Thermotoga lettingae TMO Site: position = -163 score = 77.48 sequence = CTTTCTCCATGGGGA... Gene: Tlet_1750: Thiazole synthase Thi4 |
*
Thermotoga maritima MSB8 Site: position = -154 score = 69.75 sequence = CCTTCCCCAGGGGGA... Gene: TM0787: Thiazole synthase Thi4 |
*
Thermotoga naphthophila RKU-10 Site: position = -162 score = 69.75 sequence = AACCTTCCCCAGGGG... Gene: Tnap_0143: Thiazole synthase Thi4 |
*
Thermotoga neapolitana DSM 4359 Site: position = -163 score = 76.02 sequence = ACCCTTCCCCAGGGG... Gene: CTN_1791: Thiazole synthase Thi4 |
*
Thermotoga petrophila RKU-1 Site: position = -162 score = 69.75 sequence = AACCTTCCCCAGGGG... Gene: Tpet_0142: Thiazole synthase Thi4 |
*
Thermotoga sp. RQ2 Site: position = -162 score = 69.75 sequence = AACCTTCCCCAGGGG... Gene: TRQ2_0140: Thiazole synthase Thi4 |
|
Thiazole synthase Thi4 |
| thiC |
Gene: Fnod_1421: Thiamin biosynthesis protein ThiC |
|
Gene: THA_1799: Thiamin biosynthesis protein ThiC |
*
Thermosipho melanesiensis BI429 Site: position = -181 score = 77.93 sequence = GAAAACCCGAGGGGA... Gene: Tmel_1592: Thiamin biosynthesis protein ThiC |
Gene: Tlet_1751: Thiamin biosynthesis protein ThiC |
Gene: TM0788: Thiamin biosynthesis protein ThiC |
Gene: Tnap_0142: Thiamin biosynthesis protein ThiC |
Gene: CTN_1790: Thiamin biosynthesis protein ThiC |
Gene: Tpet_0141: Thiamin biosynthesis protein ThiC |
Gene: TRQ2_0139: Thiamin biosynthesis protein ThiC |
|
Thiamin biosynthesis protein ThiC |
| TM0789 |
Gene: Fnod_1420: Xylose isomerase domain-containing protein |
|
Gene: THA_1800: Xylose isomerase domain-containing protein |
Gene: Tmel_1593: Xylose isomerase domain-containing protein |
Gene: Tlet_1752: Xylose isomerase domain-containing protein |
Gene: TM0789: Xylose isomerase domain-containing protein |
Gene: Tnap_0141: Xylose isomerase domain-containing protein |
Gene: CTN_1789: Xylose isomerase domain-containing protein |
Gene: Tpet_0140: Xylose isomerase domain-containing protein |
Gene: TRQ2_0138: Xylose isomerase domain-containing protein |
|
Xylose isomerase domain-containing protein |
| thiDN |
Gene: Fnod_1419: Phosphomethylpyrimidine kinase (EC 2.7.4.7) / Thiamin-phosphate synthase ThiN (EC 2.5.1.3) |
|
Gene: THA_1801: Phosphomethylpyrimidine kinase (EC 2.7.4.7) / Thiamin-phosphate synthase ThiN (EC 2.5.1.3) |
Gene: Tmel_1594: Phosphomethylpyrimidine kinase (EC 2.7.4.7) / Thiamin-phosphate synthase ThiN (EC 2.5.1.3) |
Gene: Tlet_1753: Phosphomethylpyrimidine kinase (EC 2.7.4.7) / Thiamin-phosphate synthase ThiN (EC 2.5.1.3) |
Gene: TM0790: Phosphomethylpyrimidine kinase (EC 2.7.4.7) / Thiamin-phosphate synthase ThiN (EC 2.5.1.3) |
Gene: Tnap_0140: Phosphomethylpyrimidine kinase (EC 2.7.4.7) / Thiamin-phosphate synthase ThiN (EC 2.5.1.3) |
Gene: CTN_1788: Phosphomethylpyrimidine kinase (EC 2.7.4.7) / Thiamin-phosphate synthase ThiN (EC 2.5.1.3) |
Gene: Tpet_0139: Phosphomethylpyrimidine kinase (EC 2.7.4.7) / Thiamin-phosphate synthase ThiN (EC 2.5.1.3) |
Gene: TRQ2_0137: Phosphomethylpyrimidine kinase (EC 2.7.4.7) / Thiamin-phosphate synthase ThiN (EC 2.5.1.3) |
|
Phosphomethylpyrimidine kinase (EC 2.7.4.7) / Thiamin-phosphate synthase ThiN (EC 2.5.1.3) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |