Regulog FMN - Staphylococcaceae

Properties
Regulator type:	RNA regulatory element
Name:	FMN
RFAM:	RF00050
Regulation mode:
Biological process:	Riboflavin biosynthesis
Effector:	Flavin mononucleotide
Phylum:	Firmicutes

Member of regulog collections

By taxonomy - Staphylococcaceae
By RNA motif - FMN
By effector - Flavin mononucleotide
By pathway - Riboflavin biosynthesis

Statistics of regulated genes
Genome	Genes	Operons
Macrococcus caseolyticus JCSC5402	5	2
Staphylococcus aureus subsp. aureus N315	5	2
Staphylococcus capitis SK14	5	2
Staphylococcus carnosus subsp. carnosus TM300	5	2
Staphylococcus epidermidis ATCC 12228	5	2
Staphylococcus haemolyticus JCSC1435	5	2
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305	5	2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes								Function

CRON 1.
ribU	* Macrococcus caseolyticus JCSC5402 Site: position = -42 score = 109.54 sequence = AGGTTTTCCTCCTCT... Gene: MCCL_1136: Substrate-specific component RibU of riboflavin ECF transporter	* Staphylococcus aureus subsp. aureus N315 Site: position = -63 score = 122.94 sequence = AGGTTTTTTGTTGTG... Gene: SA1316: Substrate-specific component RibU of riboflavin ECF transporter	* Staphylococcus capitis SK14 Site: position = -64 score = 113.67 sequence = AGGTTTTTTGTTGTG... Gene: STACA0001_1730: Substrate-specific component RibU of riboflavin ECF transporter	* Staphylococcus carnosus subsp. carnosus TM300 Site: position = -61 score = 123.48 sequence = AGGGTTTATTTGTTG... Gene: Sca_1116: Substrate-specific component RibU of riboflavin ECF transporter	* Staphylococcus epidermidis ATCC 12228 Site: position = -64 score = 113.36 sequence = AGGTTTTTTGTTGTT... Gene: SE1174: Substrate-specific component RibU of riboflavin ECF transporter	* Staphylococcus haemolyticus JCSC1435 Site: position = -190 score = 120.79 sequence = TTCATCTTCGGGGTA... Gene: SH1427: Substrate-specific component RibU of riboflavin ECF transporter	* Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Site: position = -148 score = 125.81 sequence = TTCATCTTCGGGGTA... Gene: SSP1262: Substrate-specific component RibU of riboflavin ECF transporter	Substrate-specific component RibU of riboflavin ECF transporter

CRON 2.
ribD	* Macrococcus caseolyticus JCSC5402 Site: position = -138 score = 112.41 sequence = AGGACACCATTAAGC... Gene: MCCL_1455: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)	* Staphylococcus aureus subsp. aureus N315 Site: position = -128 score = 123.35 sequence = GTTAATTATCGACAA... Gene: SA1589: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)	* Staphylococcus capitis SK14 Site: position = -134 score = 119.23 sequence = ATAATTACTCGACAA... Gene: STACA0001_0662: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)	* Staphylococcus carnosus subsp. carnosus TM300 Site: position = -176 score = 124.43 sequence = GAAGACGTCATTAAA... Gene: Sca_1375: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)	* Staphylococcus epidermidis ATCC 12228 Site: position = -151 score = 115.42 sequence = TTGAATTATCGACTT... Gene: SE1441: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)	* Staphylococcus haemolyticus JCSC1435 Site: position = -280 score = 115.43 sequence = AATTCTTTCGGGGCG... Gene: SH1153: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)	* Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Site: position = -293 score = 124.96 sequence = TATTCTTTCGGGGCA... Gene: SSP0995: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)	Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)
ribE	Macrococcus caseolyticus JCSC5402 Gene: MCCL_1454: Riboflavin synthase alpha chain (EC 2.5.1.9)	Staphylococcus aureus subsp. aureus N315 Gene: SA1588: Riboflavin synthase alpha chain (EC 2.5.1.9)	Staphylococcus capitis SK14 Gene: STACA0001_0661: Riboflavin synthase alpha chain (EC 2.5.1.9)	Staphylococcus carnosus subsp. carnosus TM300 Gene: Sca_1374: Riboflavin synthase alpha chain (EC 2.5.1.9)	Staphylococcus epidermidis ATCC 12228 Gene: SE1440: Riboflavin synthase alpha chain (EC 2.5.1.9)	Staphylococcus haemolyticus JCSC1435 Gene: SH1154: Riboflavin synthase alpha chain (EC 2.5.1.9)	Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Gene: SSP0996: Riboflavin synthase alpha chain (EC 2.5.1.9)	Riboflavin synthase alpha chain (EC 2.5.1.9)
ribBA	Macrococcus caseolyticus JCSC5402 Gene: MCCL_1453: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)	Staphylococcus aureus subsp. aureus N315 Gene: SA1587: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)	Staphylococcus capitis SK14 Gene: STACA0001_0660: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)	Staphylococcus carnosus subsp. carnosus TM300 Gene: Sca_1373: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)	Staphylococcus epidermidis ATCC 12228 Gene: SE1439: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)	Staphylococcus haemolyticus JCSC1435 Gene: SH1155: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)	Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Gene: SSP0997: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)	3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)
ribH	Macrococcus caseolyticus JCSC5402 Gene: MCCL_1452: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)	Staphylococcus aureus subsp. aureus N315 Gene: SA1586: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)	Staphylococcus capitis SK14 Gene: STACA0001_0659: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)	Staphylococcus carnosus subsp. carnosus TM300 Gene: Sca_1372: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)	Staphylococcus epidermidis ATCC 12228 Gene: SE1438: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)	Staphylococcus haemolyticus JCSC1435 Gene: SH1156: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)	Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Gene: SSP0998: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)	6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog FMN - Staphylococcaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --