Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog KdgR - Bacillales

Properties
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode: repressor
Biological process: Galacturonate utilization; Glucuronate utilization
Effector: 2-keto-3-deoxygluconate
Phylum: Firmicutes
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 13 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Anoxybacillus flavithermus WK1
Bacillus amyloliquefaciens FZB42
Bacillus cereus ATCC 14579
Bacillus clausii KSM-K16
Bacillus halodurans C-125
Bacillus licheniformis DSM 13 6 2
Bacillus pumilus SAFR-032 5 3
Bacillus subtilis subsp. subtilis str. 168 6 2
Geobacillus kaustophilus HTA426
Oceanobacillus iheyensis HTE831
Paenibacillus sp. JDR-2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
kduI
 
Anoxybacillus flavithermus WK1
 
Bacillus amyloliquefaciens FZB42
 
Bacillus cereus ATCC 14579
 
Bacillus clausii KSM-K16

Gene: ABC0994: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17)
 
Bacillus halodurans C-125

Gene: BH2166: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17)
*
Bacillus licheniformis DSM 13

Site:
position = -231
score = 6.12262
sequence = TTTGAAACCGATTTCAAA

Site:
position = -76
score = 6.23456
sequence = TTTGAAACCGTTACCAAA

Gene: BLi03829: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17)
*
Bacillus pumilus SAFR-032

Site:
position = -65
score = 5.84376
sequence = CTTGAAACCGATACCAAA

Site:
position = -226
score = 5.54091
sequence = TTCGAAACCGATTTCAAA

Gene: BPUM_3246: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17)
*
Bacillus subtilis subsp. subtilis str. 168

Site:
position = -197
score = 6.12262
sequence = TTTGAAACCGATTTCAAA

Site:
position = -66
score = 6.23456
sequence = TTTGAAACCGTTACCAAA

Gene: BSU22130: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17)
 
Geobacillus kaustophilus HTA426
 
Oceanobacillus iheyensis HTE831

Gene: OB2813: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17)
 
Paenibacillus sp. JDR-2

Gene: Pjdr2_3527: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17)
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17)
kduD
 
Anoxybacillus flavithermus WK1
 
Bacillus amyloliquefaciens FZB42
 
Bacillus cereus ATCC 14579
 
Bacillus clausii KSM-K16

Gene: ABC0993: 2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125)
 
Bacillus halodurans C-125

Gene: BH2167: 2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125)
 
Bacillus licheniformis DSM 13

Gene: BLi03830: 2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125)
 
Bacillus pumilus SAFR-032

Gene: BPUM_3247: 2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125)
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU22140: 2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125)
 
Geobacillus kaustophilus HTA426
 
Oceanobacillus iheyensis HTE831

Gene: OB2814: 2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125)
 
Paenibacillus sp. JDR-2

Gene: Pjdr2_3529: 2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125)
2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125)
 
CRON 2.
kdgR
 
Anoxybacillus flavithermus WK1
 
Bacillus amyloliquefaciens FZB42
 
Bacillus cereus ATCC 14579
 
Bacillus clausii KSM-K16
 
Bacillus halodurans C-125
*
Bacillus licheniformis DSM 13

Site:
position = -42
score = 6.12262
sequence = TTTGAAATCGGTTTCAAA

Site:
position = -197
score = 6.23456
sequence = TTTGGTAACGGTTTCAAA

Gene: BLi03828: Transcriptional regulator of pectin utilization, LacI family
*
Bacillus pumilus SAFR-032

Site:
position = -54
score = 5.54091
sequence = TTTGAAATCGGTTTCGAA

Site:
position = -215
score = 5.84376
sequence = TTTGGTATCGGTTTCAAG

Gene: BPUM_3245: Transcriptional regulator of pectin utilization, LacI family
*
Bacillus subtilis subsp. subtilis str. 168

Site:
position = -42
score = 6.12262
sequence = TTTGAAATCGGTTTCAAA

Site:
position = -173
score = 6.23456
sequence = TTTGGTAACGGTTTCAAA

Gene: BSU22120: Transcriptional regulator of pectin utilization, LacI family
 
Geobacillus kaustophilus HTA426
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Transcriptional regulator of pectin utilization, LacI family
kdgK
 
Anoxybacillus flavithermus WK1
 
Bacillus amyloliquefaciens FZB42
 
Bacillus cereus ATCC 14579
 
Bacillus clausii KSM-K16
 
Bacillus halodurans C-125
 
Bacillus licheniformis DSM 13

Gene: BLi03827: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)
*
Bacillus pumilus SAFR-032

Site:
position = -33
score = 6.02755
sequence = TTTGAAACCGGTACCAAG

Gene: BPUM_3244: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU22110: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)
 
Geobacillus kaustophilus HTA426
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)
kdgA
 
Anoxybacillus flavithermus WK1
 
Bacillus amyloliquefaciens FZB42
 
Bacillus cereus ATCC 14579
 
Bacillus clausii KSM-K16
 
Bacillus halodurans C-125
 
Bacillus licheniformis DSM 13

Gene: BLi03826: 4-Hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) / 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
 
Bacillus pumilus SAFR-032

Gene: BPUM_3243: 4-Hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) / 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU22100: 4-Hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) / 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
 
Geobacillus kaustophilus HTA426
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
4-Hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) / 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
kdgT
 
Anoxybacillus flavithermus WK1
 
Bacillus amyloliquefaciens FZB42
 
Bacillus cereus ATCC 14579
 
Bacillus clausii KSM-K16
 
Bacillus halodurans C-125
 
Bacillus licheniformis DSM 13

Gene: BLi03825: 2-keto-3-deoxygluconate permease
 
Bacillus pumilus SAFR-032
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU22090: 2-keto-3-deoxygluconate permease
 
Geobacillus kaustophilus HTA426
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
2-keto-3-deoxygluconate permease
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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