Regulog KdgR - Bacillales
| Regulator type: | Transcription factor |
| Regulator family: | LacI |
| Regulation mode: | repressor |
| Biological process: | Galacturonate utilization; Glucuronate utilization |
| Effector: | 2-keto-3-deoxygluconate |
| Phylum: | Firmicutes |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Bacillales
- By TF family - LacI
- By effector - 2-keto-3-deoxygluconate
- By pathway - Galacturonate utilization
- By pathway - Glucuronate utilization
| Genome | Genes | Operons |
|---|---|---|
| Anoxybacillus flavithermus WK1 | ||
| Bacillus amyloliquefaciens FZB42 | ||
| Bacillus cereus ATCC 14579 | ||
| Bacillus clausii KSM-K16 | ||
| Bacillus halodurans C-125 | ||
| Bacillus licheniformis DSM 13 | 6 | 2 |
| Bacillus pumilus SAFR-032 | 5 | 3 |
| Bacillus subtilis subsp. subtilis str. 168 | 6 | 2 |
| Geobacillus kaustophilus HTA426 | ||
| Oceanobacillus iheyensis HTE831 | ||
| Paenibacillus sp. JDR-2 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| kduI |
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Gene: ABC0994: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17) |
Gene: BH2166: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17) |
*
Bacillus licheniformis DSM 13 Site: position = -231 score = 6.12262 sequence = TTTGAAACCGATTTCAAA Site: position = -76 score = 6.23456 sequence = TTTGAAACCGTTACCAAA Gene: BLi03829: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17) |
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Bacillus pumilus SAFR-032 Site: position = -65 score = 5.84376 sequence = CTTGAAACCGATACCAAA Site: position = -226 score = 5.54091 sequence = TTCGAAACCGATTTCAAA Gene: BPUM_3246: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17) |
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Bacillus subtilis subsp. subtilis str. 168 Site: position = -197 score = 6.12262 sequence = TTTGAAACCGATTTCAAA Site: position = -66 score = 6.23456 sequence = TTTGAAACCGTTACCAAA Gene: BSU22130: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17) |
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Gene: OB2813: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17) |
Gene: Pjdr2_3527: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17) |
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17) |
| kduD |
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Gene: ABC0993: 2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125) |
Gene: BH2167: 2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125) |
Gene: BLi03830: 2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125) |
Gene: BPUM_3247: 2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125) |
Gene: BSU22140: 2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125) |
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Gene: OB2814: 2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125) |
Gene: Pjdr2_3529: 2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125) |
2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125) |
| CRON 2. | ||||||||||||
| kdgR |
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Bacillus licheniformis DSM 13 Site: position = -42 score = 6.12262 sequence = TTTGAAATCGGTTTCAAA Site: position = -197 score = 6.23456 sequence = TTTGGTAACGGTTTCAAA Gene: BLi03828: Transcriptional regulator of pectin utilization, LacI family |
*
Bacillus pumilus SAFR-032 Site: position = -54 score = 5.54091 sequence = TTTGAAATCGGTTTCGAA Site: position = -215 score = 5.84376 sequence = TTTGGTATCGGTTTCAAG Gene: BPUM_3245: Transcriptional regulator of pectin utilization, LacI family |
*
Bacillus subtilis subsp. subtilis str. 168 Site: position = -42 score = 6.12262 sequence = TTTGAAATCGGTTTCAAA Site: position = -173 score = 6.23456 sequence = TTTGGTAACGGTTTCAAA Gene: BSU22120: Transcriptional regulator of pectin utilization, LacI family |
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Transcriptional regulator of pectin utilization, LacI family |
| kdgK |
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Gene: BLi03827: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) |
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Bacillus pumilus SAFR-032 Site: position = -33 score = 6.02755 sequence = TTTGAAACCGGTACCAAG Gene: BPUM_3244: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) |
Gene: BSU22110: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) |
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2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) |
| kdgA |
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Gene: BLi03826: 4-Hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) / 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) |
Gene: BPUM_3243: 4-Hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) / 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) |
Gene: BSU22100: 4-Hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) / 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) |
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4-Hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) / 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) |
| kdgT |
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Gene: BLi03825: 2-keto-3-deoxygluconate permease |
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Gene: BSU22090: 2-keto-3-deoxygluconate permease |
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2-keto-3-deoxygluconate permease |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |