Regulog HrcA - Cyanobacteria

Properties
Regulator type:	Transcription factor
Regulator family:	HrcA
Regulation mode:	repressor
Biological process:	Heat shock response
Effector:	Heat shock
Phylum:	Cyanobacteria
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 29 sites [see more]

Member of regulog collections

By taxonomy - Cyanobacteria
By trascription factor - HrcA
By TF family - HrcA
By effector - Heat shock
By pathway - Heat shock response

Statistics of regulated genes
Genome	Genes	Operons
Cyanothece sp. ATCC 51142	4	3
Cyanothece sp. PCC 7425	3	2
Cyanothece sp. PCC 8801	3	2
Gloeobacter violaceus PCC 7421	4	2
Microcystis aeruginosa NIES-843	3	2
Nostoc sp. PCC 7120	4	3
Prochlorococcus marinus str. MIT 9313	2	1
Synechococcus elongatus PCC 7942	2	1
Synechococcus sp. JA-3-3Ab	3	2
Synechococcus sp. PCC 7002	4	3
Synechococcus sp. WH 8102	3	2
Synechocystis sp. PCC 6803	3	2
Thermosynechococcus elongatus BP-1	2	1
Trichodesmium erythraeum IMS101	4	3

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes															Function

CRON 1.
groES	* Cyanothece sp. ATCC 51142 Site: position = -79 score = 10.2105 sequence = TTAGCACTC-(9)-GAGTGCTAA Gene: cce_1343: Heat shock protein 60 family co-chaperone GroES	* Cyanothece sp. PCC 7425 Site: position = -123 score = 10.2105 sequence = TTAGCACTC-(9)-GAGTGCTAA Gene: Cyan7425_5138: Heat shock protein 60 family co-chaperone GroES	* Cyanothece sp. PCC 8801 Site: position = -82 score = 10.2105 sequence = TTAGCACTC-(9)-GAGTGCTAA Gene: PCC8801_2855: Heat shock protein 60 family co-chaperone GroES	2 Gloeobacter violaceus PCC 7421* Site: position = -92 score = 9.61996 sequence = TTAGCACTC-(9)-CAGTGCTAA Gene: gvip139: Heat shock protein 60 family co-chaperone GroES Site: position = -66 score = 9.6194 sequence = TTAGCACTT-(9)-GAGTGCTAA Gene: gvip396: Heat shock protein 60 family co-chaperone GroES	* Microcystis aeruginosa NIES-843 Site: position = -74 score = 10.2105 sequence = TTAGCACTC-(9)-GAGTGCTAA Gene: MAE_46070: Heat shock protein 60 family co-chaperone GroES	* Nostoc sp. PCC 7120 Site: position = -45 score = 10.2105 sequence = TTAGCACTC-(9)-GAGTGCTAA Gene: alr3661: Heat shock protein 60 family co-chaperone GroES	* Prochlorococcus marinus str. MIT 9313 Site: position = -81 score = 9.15116 sequence = TTGGCACTC-(9)-GAGTGCTAC Gene: PMT1450: Heat shock protein 60 family co-chaperone GroES	* Synechococcus elongatus PCC 7942 Site: position = -81 score = 10.2105 sequence = TTAGCACTC-(9)-GAGTGCTAA Gene: Synpcc7942_2314: Heat shock protein 60 family co-chaperone GroES	* Synechococcus sp. JA-3-3Ab Site: position = -108 score = 9.73197 sequence = CTAGCACTC-(9)-GAGTGCTAA Gene: CYA_1406: Heat shock protein 60 family co-chaperone GroES	* Synechococcus sp. PCC 7002 Site: position = -76 score = 10.2105 sequence = TTAGCACTC-(9)-GAGTGCTAA Gene: SYNPCC7002_A2457: Heat shock protein 60 family co-chaperone GroES	* Synechococcus sp. WH 8102 Site: position = -77 score = 8.56063 sequence = TTGGCACTC-(9)-GAGTGCCAG Gene: SYNW0513: Heat shock protein 60 family co-chaperone GroES	* Synechocystis sp. PCC 6803 Site: position = -74 score = 10.2105 sequence = TTAGCACTC-(9)-GAGTGCTAA Gene: slr2075: Heat shock protein 60 family co-chaperone GroES	* Thermosynechococcus elongatus BP-1 Site: position = -126 score = 10.2105 sequence = TTAGCACTC-(9)-GAGTGCTAA Gene: null: Heat shock protein 60 family co-chaperone GroES	* Trichodesmium erythraeum IMS101 Site: position = -104 score = 10.2105 sequence = TTAGCACTC-(9)-GAGTGCTAA Gene: Tery_4326: Heat shock protein 60 family co-chaperone GroES	Heat shock protein 60 family co-chaperone GroES
groEL	Cyanothece sp. ATCC 51142 Gene: cce_1344: Heat shock protein 60 family chaperone GroEL	Cyanothece sp. PCC 7425 Gene: Cyan7425_5137: Heat shock protein 60 family chaperone GroEL	Cyanothece sp. PCC 8801 Gene: PCC8801_2854: Heat shock protein 60 family chaperone GroEL	2 Gloeobacter violaceus PCC 7421 Gene: gvip138: Heat shock protein 60 family chaperone GroEL Gene: gvip397: Heat shock protein 60 family chaperone GroEL	Microcystis aeruginosa NIES-843 Gene: MAE_46080: Heat shock protein 60 family chaperone GroEL	Nostoc sp. PCC 7120 Gene: alr3662: Heat shock protein 60 family chaperone GroEL	Prochlorococcus marinus str. MIT 9313 Gene: PMT1449: Heat shock protein 60 family chaperone GroEL	Synechococcus elongatus PCC 7942 Gene: Synpcc7942_2313: Heat shock protein 60 family chaperone GroEL	Synechococcus sp. JA-3-3Ab Gene: CYA_1407: Heat shock protein 60 family chaperone GroEL	Synechococcus sp. PCC 7002 Gene: SYNPCC7002_A2458: Heat shock protein 60 family chaperone GroEL	Synechococcus sp. WH 8102 Gene: SYNW0514: Heat shock protein 60 family chaperone GroEL	Synechocystis sp. PCC 6803 Gene: slr2076: Heat shock protein 60 family chaperone GroEL	Thermosynechococcus elongatus BP-1 Gene: null: Heat shock protein 60 family chaperone GroEL	Trichodesmium erythraeum IMS101 Gene: Tery_4327: Heat shock protein 60 family chaperone GroEL	Heat shock protein 60 family chaperone GroEL

CRON 2.
groEL2	* Cyanothece sp. ATCC 51142 Site: position = -114 score = 10.2105 sequence = TTAGCACTC-(9)-GAGTGCTAA Gene: cce_3330: Heat shock protein 60 family chaperone GroEL	* Cyanothece sp. PCC 7425 Site: position = -139 score = 10.2105 sequence = TTAGCACTC-(9)-GAGTGCTAA Gene: Cyan7425_2334: Heat shock protein 60 family chaperone GroEL	* Cyanothece sp. PCC 8801 Site: position = -199 score = 10.2105 sequence = TTAGCACTC-(9)-GAGTGCTAA Gene: PCC8801_1190: Heat shock protein 60 family chaperone GroEL	Gloeobacter violaceus PCC 7421	* Microcystis aeruginosa NIES-843 Site: position = -63 score = 10.2105 sequence = TTAGCACTC-(9)-GAGTGCTAA Gene: MAE_03410: Heat shock protein 60 family chaperone GroEL	* Nostoc sp. PCC 7120 Site: position = -59 score = 10.2105 sequence = TTAGCACTC-(9)-GAGTGCTAA Gene: alr1896: Heat shock protein 60 family chaperone GroEL	Prochlorococcus marinus str. MIT 9313 Gene: PMT1334: Heat shock protein 60 family chaperone GroEL	Synechococcus elongatus PCC 7942 Gene: Synpcc7942_0685: Heat shock protein 60 family chaperone GroEL	* Synechococcus sp. JA-3-3Ab Site: position = -131 score = 10.2105 sequence = TTAGCACTC-(9)-GAGTGCTAA Gene: CYA_0332: Heat shock protein 60 family chaperone GroEL	* Synechococcus sp. PCC 7002 Site: position = -65 score = 9.6194 sequence = TTAGCAGTC-(9)-GAGTGCTAA Gene: SYNPCC7002_A0147: Heat shock protein 60 family chaperone GroEL	Synechococcus sp. WH 8102 Gene: SYNW1854: Heat shock protein 60 family chaperone GroEL	* Synechocystis sp. PCC 6803 Site: position = -81 score = 10.2105 sequence = TTAGCACTC-(9)-GAGTGCTAA Gene: sll0416: Heat shock protein 60 family chaperone GroEL	Thermosynechococcus elongatus BP-1 Gene: null: Heat shock protein 60 family chaperone GroEL	* Trichodesmium erythraeum IMS101 Site: position = -58 score = 9.73197 sequence = CTAGCACTC-(9)-GAGTGCTAA Gene: Tery_0270: Heat shock protein 60 family chaperone GroEL	Heat shock protein 60 family chaperone GroEL

CRON 3.
SYNPCC7002_A0107	* Cyanothece sp. ATCC 51142 Site: position = -108 score = 9.42606 sequence = TTAGCACTC-(9)-AAGTGCTAA Gene: cce_0796: Conserved hypothetical protein	Cyanothece sp. PCC 7425 Gene: Cyan7425_2301: Conserved hypothetical protein	Cyanothece sp. PCC 8801	Gloeobacter violaceus PCC 7421	Microcystis aeruginosa NIES-843	* Nostoc sp. PCC 7120 Site: position = -166 score = 10.2105 sequence = TTAGCACTC-(9)-GAGTGCTAA Gene: all4757: Conserved hypothetical protein	Prochlorococcus marinus str. MIT 9313	Synechococcus elongatus PCC 7942 Gene: Synpcc7942_1042: Conserved hypothetical protein	Synechococcus sp. JA-3-3Ab Gene: CYA_1572: Conserved hypothetical protein	* Synechococcus sp. PCC 7002 Site: position = -238 score = 8.6323 sequence = TTAGCACTC-(9)-AACTGCTAA Gene: SYNPCC7002_A0107: Conserved hypothetical protein	* Synechococcus sp. WH 8102 Site: position = -119 score = 10.2105 sequence = TTAGCACTC-(9)-GAGTGCTAA Gene: SYNW2498: Conserved hypothetical protein	Synechocystis sp. PCC 6803 Gene: slr1770: Conserved hypothetical protein	Thermosynechococcus elongatus BP-1	* Trichodesmium erythraeum IMS101 Site: position = -281 score = 9.41674 sequence = TTAGCACTC-(9)-GACTGCTAA Gene: Tery_2626: Conserved hypothetical protein	Conserved hypothetical protein

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog HrcA - Cyanobacteria

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --