Regulog SinR - Bacillales

Properties
Regulator type:	Transcription factor
Regulator family:	XRE
Regulation mode:	repressor
Biological process:	Biofilm formation
Effector:	SinI, antirepressor protein
Phylum:	Firmicutes
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 15 sites [see more]

Member of regulog collections

By taxonomy - Bacillales
By TF family - XRE
By effector - SinI, antirepressor protein
By pathway - Biofilm formation

Statistics of regulated genes
Genome	Genes	Operons
Anoxybacillus flavithermus WK1
Bacillus amyloliquefaciens FZB42	19	3
Bacillus cereus ATCC 14579	2	1
Bacillus clausii KSM-K16
Bacillus halodurans C-125	2	1
Bacillus licheniformis DSM 13	19	3
Bacillus pumilus SAFR-032	17	3
Bacillus subtilis subsp. subtilis str. 168	19	3
Geobacillus kaustophilus HTA426
Oceanobacillus iheyensis HTE831	2	1
Paenibacillus sp. JDR-2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes												Function

CRON 1.
epsA	Anoxybacillus flavithermus WK1	* Bacillus amyloliquefaciens FZB42 Site: position = -125 score = 6.26612 sequence = GTTCTTTAAAAAGAAC Gene: RBAM_031670: Possible capsular polysaccharide biosynthesis protein	Bacillus cereus ATCC 14579	Bacillus clausii KSM-K16	Bacillus halodurans C-125	* Bacillus licheniformis DSM 13 Site: position = -106 score = 6.13462 sequence = GTTCTCTAAAAAGAAC Gene: BLi03694: Possible capsular polysaccharide biosynthesis protein	* Bacillus pumilus SAFR-032 Site: position = -125 score = 6.26612 sequence = GTTCTTTAAAAAGAAC Gene: BPUM_3083: Possible capsular polysaccharide biosynthesis protein	* Bacillus subtilis subsp. subtilis str. 168 Site: position = -127 score = 6.00313 sequence = GTTCTCTAAAGAGAAC Gene: BSU34370: Possible capsular polysaccharide biosynthesis protein	Geobacillus kaustophilus HTA426	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Possible capsular polysaccharide biosynthesis protein
epsB	Anoxybacillus flavithermus WK1	Bacillus amyloliquefaciens FZB42 Gene: RBAM_031660: Capsular polysaccharide biosynthesis protein	Bacillus cereus ATCC 14579	Bacillus clausii KSM-K16	Bacillus halodurans C-125	Bacillus licheniformis DSM 13 Gene: BLi03693: Capsular polysaccharide biosynthesis protein	Bacillus pumilus SAFR-032 Gene: BPUM_3082: Capsular polysaccharide biosynthesis protein	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU34360: Capsular polysaccharide biosynthesis protein	Geobacillus kaustophilus HTA426	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Capsular polysaccharide biosynthesis protein
epsC	Anoxybacillus flavithermus WK1	Bacillus amyloliquefaciens FZB42 Gene: RBAM_031650: Capsular polysaccharide biosynthesis protein	Bacillus cereus ATCC 14579	Bacillus clausii KSM-K16	Bacillus halodurans C-125	Bacillus licheniformis DSM 13 Gene: BLi03692: Capsular polysaccharide biosynthesis protein	Bacillus pumilus SAFR-032 Gene: BPUM_3081: Capsular polysaccharide biosynthesis protein	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU34350: Capsular polysaccharide biosynthesis protein	Geobacillus kaustophilus HTA426	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Capsular polysaccharide biosynthesis protein
epsD	Anoxybacillus flavithermus WK1	Bacillus amyloliquefaciens FZB42 Gene: RBAM_031640: Putative glycosyltransferase	Bacillus cereus ATCC 14579	Bacillus clausii KSM-K16	Bacillus halodurans C-125	Bacillus licheniformis DSM 13 Gene: BLi03691: Putative glycosyltransferase	Bacillus pumilus SAFR-032 Gene: BPUM_3080: Putative glycosyltransferase	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU34340: Putative glycosyltransferase	Geobacillus kaustophilus HTA426	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Putative glycosyltransferase
epsE	Anoxybacillus flavithermus WK1	Bacillus amyloliquefaciens FZB42 Gene: RBAM_031630: Family II glycosyltransferase/flagellar clutch	Bacillus cereus ATCC 14579	Bacillus clausii KSM-K16	Bacillus halodurans C-125	Bacillus licheniformis DSM 13 Gene: BLi03690: Family II glycosyltransferase/flagellar clutch	Bacillus pumilus SAFR-032 Gene: BPUM_3079: Family II glycosyltransferase/flagellar clutch	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU34330: Family II glycosyltransferase/flagellar clutch	Geobacillus kaustophilus HTA426	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Family II glycosyltransferase/flagellar clutch
epsF	Anoxybacillus flavithermus WK1	Bacillus amyloliquefaciens FZB42 Gene: RBAM_031620: Putative glycosyltransferase	Bacillus cereus ATCC 14579	Bacillus clausii KSM-K16	Bacillus halodurans C-125	Bacillus licheniformis DSM 13 Gene: BLi03689: Putative glycosyltransferase	Bacillus pumilus SAFR-032 Gene: BPUM_3078: Putative glycosyltransferase	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU34320: Putative glycosyltransferase	Geobacillus kaustophilus HTA426	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2 Gene: Pjdr2_0356: Putative glycosyltransferase	Putative glycosyltransferase
epsG	Anoxybacillus flavithermus WK1	Bacillus amyloliquefaciens FZB42 Gene: RBAM_031610: Putative transmembrane protein	Bacillus cereus ATCC 14579	Bacillus clausii KSM-K16	Bacillus halodurans C-125	Bacillus licheniformis DSM 13 Gene: BLi03688: Putative transmembrane protein	Bacillus pumilus SAFR-032 Gene: BPUM_3077: Putative transmembrane protein	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU34310: Putative transmembrane protein	Geobacillus kaustophilus HTA426	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Putative transmembrane protein
epsH	Anoxybacillus flavithermus WK1	Bacillus amyloliquefaciens FZB42 Gene: RBAM_031600: Glycosyltransferase	Bacillus cereus ATCC 14579	Bacillus clausii KSM-K16	Bacillus halodurans C-125	Bacillus licheniformis DSM 13 Gene: BLi03687: Glycosyltransferase	Bacillus pumilus SAFR-032 Gene: BPUM_3076: Glycosyltransferase	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU34300: Glycosyltransferase	Geobacillus kaustophilus HTA426	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Glycosyltransferase
epsI	Anoxybacillus flavithermus WK1	Bacillus amyloliquefaciens FZB42 Gene: RBAM_031590: Putative pyruvyl transferase	Bacillus cereus ATCC 14579	Bacillus clausii KSM-K16	Bacillus halodurans C-125	Bacillus licheniformis DSM 13 Gene: BLi03686: Putative pyruvyl transferase	Bacillus pumilus SAFR-032 Gene: BPUM_3075: Putative pyruvyl transferase	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU34290: Putative pyruvyl transferase	Geobacillus kaustophilus HTA426	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Putative pyruvyl transferase
epsJ	Anoxybacillus flavithermus WK1	Bacillus amyloliquefaciens FZB42 Gene: RBAM_031580: Putative glycosyltransferase involved in pellicle formation	Bacillus cereus ATCC 14579	Bacillus clausii KSM-K16	Bacillus halodurans C-125	Bacillus licheniformis DSM 13 Gene: BLi03685: Putative glycosyltransferase involved in pellicle formation	Bacillus pumilus SAFR-032	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU34280: Putative glycosyltransferase involved in pellicle formation	Geobacillus kaustophilus HTA426	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Putative glycosyltransferase involved in pellicle formation
epsK	Anoxybacillus flavithermus WK1	Bacillus amyloliquefaciens FZB42 Gene: RBAM_031570: Uncharacterized membrane protein	Bacillus cereus ATCC 14579	Bacillus clausii KSM-K16	Bacillus halodurans C-125	Bacillus licheniformis DSM 13 Gene: BLi03684: Uncharacterized membrane protein	Bacillus pumilus SAFR-032 Gene: BPUM_3074: Uncharacterized membrane protein	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU34265: Uncharacterized membrane protein	Geobacillus kaustophilus HTA426	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Uncharacterized membrane protein
epsL	Anoxybacillus flavithermus WK1	Bacillus amyloliquefaciens FZB42 Gene: RBAM_031560: Sugar transferase	Bacillus cereus ATCC 14579	Bacillus clausii KSM-K16	Bacillus halodurans C-125	Bacillus licheniformis DSM 13 Gene: BLi03683: Sugar transferase	Bacillus pumilus SAFR-032 Gene: BPUM_3073: Sugar transferase	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU34250: Sugar transferase	Geobacillus kaustophilus HTA426	Oceanobacillus iheyensis HTE831 Gene: OB2892: Sugar transferase	Paenibacillus sp. JDR-2	Sugar transferase
epsM	Anoxybacillus flavithermus WK1	Bacillus amyloliquefaciens FZB42 Gene: RBAM_031550: Putative O-acetyltransferase involved in pellicle formation	Bacillus cereus ATCC 14579	Bacillus clausii KSM-K16	Bacillus halodurans C-125	Bacillus licheniformis DSM 13 Gene: BLi03682: Putative O-acetyltransferase involved in pellicle formation	Bacillus pumilus SAFR-032 Gene: BPUM_3072: Putative O-acetyltransferase involved in pellicle formation	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU34240: Putative O-acetyltransferase involved in pellicle formation	Geobacillus kaustophilus HTA426	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2 Gene: Pjdr2_0362: Putative O-acetyltransferase involved in pellicle formation	Putative O-acetyltransferase involved in pellicle formation
epsN	Anoxybacillus flavithermus WK1	Bacillus amyloliquefaciens FZB42 Gene: RBAM_031540: Putative pyridoxal phosphate-dependent aminotransferase	Bacillus cereus ATCC 14579	Bacillus clausii KSM-K16	Bacillus halodurans C-125	Bacillus licheniformis DSM 13 Gene: BLi03681: Putative pyridoxal phosphate-dependent aminotransferase	Bacillus pumilus SAFR-032 Gene: BPUM_3071: Putative pyridoxal phosphate-dependent aminotransferase	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU34230: Putative pyridoxal phosphate-dependent aminotransferase	Geobacillus kaustophilus HTA426	Oceanobacillus iheyensis HTE831 Gene: OB2893: Putative pyridoxal phosphate-dependent aminotransferase	Paenibacillus sp. JDR-2 Gene: Pjdr2_0363: Putative pyridoxal phosphate-dependent aminotransferase	Putative pyridoxal phosphate-dependent aminotransferase
epsO	Anoxybacillus flavithermus WK1	Bacillus amyloliquefaciens FZB42 Gene: RBAM_031530: Putative pyruvyl transferase	Bacillus cereus ATCC 14579	Bacillus clausii KSM-K16	Bacillus halodurans C-125	Bacillus licheniformis DSM 13 Gene: BLi03680: Putative pyruvyl transferase	Bacillus pumilus SAFR-032	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU34220: Putative pyruvyl transferase	Geobacillus kaustophilus HTA426	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Putative pyruvyl transferase

CRON 2.
slr	Anoxybacillus flavithermus WK1	* Bacillus amyloliquefaciens FZB42 Site: position = -135 score = 6.26612 sequence = GTTCTTTTTAAAGAAC Gene: RBAM_031680: Transcriptional repressor of cell separation and motility/antirepressor of SinR	Bacillus cereus ATCC 14579	Bacillus clausii KSM-K16	Bacillus halodurans C-125	* Bacillus licheniformis DSM 13 Site: position = -145 score = 6.13462 sequence = GTTCTTTTTAGAGAAC Gene: BLi03695: Transcriptional repressor of cell separation and motility/antirepressor of SinR	* Bacillus pumilus SAFR-032 Site: position = -148 score = 6.26612 sequence = GTTCTTTTTAAAGAAC Gene: BPUM_3084: Transcriptional repressor of cell separation and motility/antirepressor of SinR	* Bacillus subtilis subsp. subtilis str. 168 Site: position = -134 score = 6.00313 sequence = GTTCTCTTTAGAGAAC Gene: BSU34380: Transcriptional repressor of cell separation and motility/antirepressor of SinR	Geobacillus kaustophilus HTA426	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Transcriptional repressor of cell separation and motility/antirepressor of SinR

CRON 3.
yqxM	Anoxybacillus flavithermus WK1	* Bacillus amyloliquefaciens FZB42 Site: position = -55 score = 6.13462 sequence = GTTCTTTAAAGAGAAC Gene: RBAM_022960: Lipoprotein for biofilm formation	Bacillus cereus ATCC 14579	Bacillus clausii KSM-K16	* Bacillus halodurans C-125 Site: position = -131 score = 5.66661 sequence = GTTCTTTATAAAAAAC Gene: BH2131: Lipoprotein for biofilm formation	* Bacillus licheniformis DSM 13 Site: position = -55 score = 5.85493 sequence = GTTCTTTAAAACGAAC Gene: BLi02639: Lipoprotein for biofilm formation	* Bacillus pumilus SAFR-032 Site: position = -41 score = 6.26612 sequence = GTTCTTTTTAAAGAAC Gene: BPUM_2196: Lipoprotein for biofilm formation	* Bacillus subtilis subsp. subtilis str. 168 Site: position = -57 score = 6.13462 sequence = GTTCTTTAAAGAGAAC Gene: BSU24640: Lipoprotein for biofilm formation	Geobacillus kaustophilus HTA426	Oceanobacillus iheyensis HTE831 Gene: OB2527: Lipoprotein for biofilm formation	Paenibacillus sp. JDR-2	Lipoprotein for biofilm formation
sipW	Anoxybacillus flavithermus WK1	Bacillus amyloliquefaciens FZB42 Gene: RBAM_022950: Signal peptidase SipW (EC 3.4.21.89), required for TasA secretion	* Bacillus cereus ATCC 14579 Site: position = -71 score = 5.67783 sequence = GTTCTTGTTAAAGAAC Gene: BC1278: Signal peptidase SipW (EC 3.4.21.89), required for TasA secretion	Bacillus clausii KSM-K16 Gene: ABC0753: Signal peptidase SipW (EC 3.4.21.89), required for TasA secretion	Bacillus halodurans C-125 Gene: BH2130: Signal peptidase SipW (EC 3.4.21.89), required for TasA secretion	Bacillus licheniformis DSM 13 Gene: BLi02638: Signal peptidase SipW (EC 3.4.21.89), required for TasA secretion	Bacillus pumilus SAFR-032 Gene: BPUM_2195: Signal peptidase SipW (EC 3.4.21.89), required for TasA secretion	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU24630: Signal peptidase SipW (EC 3.4.21.89), required for TasA secretion	Geobacillus kaustophilus HTA426	3 Oceanobacillus iheyensis HTE831 Gene: OB1301: Signal peptidase SipW (EC 3.4.21.89), required for TasA secretion Gene: OB2526: Signal peptidase SipW (EC 3.4.21.89), required for TasA secretion Gene: OB0800: Signal peptidase SipW (EC 3.4.21.89), required for TasA secretion	Paenibacillus sp. JDR-2	Signal peptidase SipW (EC 3.4.21.89), required for TasA secretion
tasA	Anoxybacillus flavithermus WK1	Bacillus amyloliquefaciens FZB42 Gene: RBAM_022940: Stationary phase secreted protein TasA, major protein component of biofilm matrix	Bacillus cereus ATCC 14579	Bacillus clausii KSM-K16	Bacillus halodurans C-125	Bacillus licheniformis DSM 13 Gene: BLi02637: Stationary phase secreted protein TasA, major protein component of biofilm matrix	Bacillus pumilus SAFR-032 Gene: BPUM_2194: Stationary phase secreted protein TasA, major protein component of biofilm matrix	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU24620: Stationary phase secreted protein TasA, major protein component of biofilm matrix	Geobacillus kaustophilus HTA426	Oceanobacillus iheyensis HTE831 Gene: OB2528: Stationary phase secreted protein TasA, major protein component of biofilm matrix	Paenibacillus sp. JDR-2	Stationary phase secreted protein TasA, major protein component of biofilm matrix
cotN	Anoxybacillus flavithermus WK1	Bacillus amyloliquefaciens FZB42	Bacillus cereus ATCC 14579 Gene: BC1279: Secreted and spore coat-associated protein 3, similar to biofilm matrix component TasA and to camelysin	Bacillus clausii KSM-K16	Bacillus halodurans C-125	Bacillus licheniformis DSM 13	Bacillus pumilus SAFR-032	Bacillus subtilis subsp. subtilis str. 168	Geobacillus kaustophilus HTA426	3 Oceanobacillus iheyensis HTE831* Site: position = -186 score = 6.26612 sequence = GTTCTTTATAAAGAAC Gene: OB2529: Secreted and spore coat-associated protein 3, similar to biofilm matrix component TasA and to camelysin Gene: OB0801: Secreted and spore coat-associated protein 3, similar to biofilm matrix component TasA and to camelysin Gene: OB1302: Secreted and spore coat-associated protein 3, similar to biofilm matrix component TasA and to camelysin	Paenibacillus sp. JDR-2	Secreted and spore coat-associated protein 3, similar to biofilm matrix component TasA and to camelysin

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog SinR - Bacillales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --