Regulog SinR - Bacillales
| Regulator type: | Transcription factor |
| Regulator family: | XRE |
| Regulation mode: | repressor |
| Biological process: | Biofilm formation |
| Effector: | SinI, antirepressor protein |
| Phylum: | Firmicutes |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Bacillales
- By TF family - XRE
- By effector - SinI, antirepressor protein
- By pathway - Biofilm formation
| Genome | Genes | Operons |
|---|---|---|
| Anoxybacillus flavithermus WK1 | ||
| Bacillus amyloliquefaciens FZB42 | 19 | 3 |
| Bacillus cereus ATCC 14579 | 2 | 1 |
| Bacillus clausii KSM-K16 | ||
| Bacillus halodurans C-125 | 2 | 1 |
| Bacillus licheniformis DSM 13 | 19 | 3 |
| Bacillus pumilus SAFR-032 | 17 | 3 |
| Bacillus subtilis subsp. subtilis str. 168 | 19 | 3 |
| Geobacillus kaustophilus HTA426 | ||
| Oceanobacillus iheyensis HTE831 | 2 | 1 |
| Paenibacillus sp. JDR-2 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| epsA |
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*
Bacillus amyloliquefaciens FZB42 Site: position = -125 score = 6.26612 sequence = GTTCTTTAAAAAGAAC Gene: RBAM_031670: Possible capsular polysaccharide biosynthesis protein |
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*
Bacillus licheniformis DSM 13 Site: position = -106 score = 6.13462 sequence = GTTCTCTAAAAAGAAC Gene: BLi03694: Possible capsular polysaccharide biosynthesis protein |
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Bacillus pumilus SAFR-032 Site: position = -125 score = 6.26612 sequence = GTTCTTTAAAAAGAAC Gene: BPUM_3083: Possible capsular polysaccharide biosynthesis protein |
*
Bacillus subtilis subsp. subtilis str. 168 Site: position = -127 score = 6.00313 sequence = GTTCTCTAAAGAGAAC Gene: BSU34370: Possible capsular polysaccharide biosynthesis protein |
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Possible capsular polysaccharide biosynthesis protein |
| epsB |
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Gene: RBAM_031660: Capsular polysaccharide biosynthesis protein |
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Gene: BLi03693: Capsular polysaccharide biosynthesis protein |
Gene: BPUM_3082: Capsular polysaccharide biosynthesis protein |
Gene: BSU34360: Capsular polysaccharide biosynthesis protein |
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Capsular polysaccharide biosynthesis protein |
| epsC |
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Gene: RBAM_031650: Capsular polysaccharide biosynthesis protein |
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Gene: BLi03692: Capsular polysaccharide biosynthesis protein |
Gene: BPUM_3081: Capsular polysaccharide biosynthesis protein |
Gene: BSU34350: Capsular polysaccharide biosynthesis protein |
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Capsular polysaccharide biosynthesis protein |
| epsD |
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Gene: RBAM_031640: Putative glycosyltransferase |
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Gene: BLi03691: Putative glycosyltransferase |
Gene: BPUM_3080: Putative glycosyltransferase |
Gene: BSU34340: Putative glycosyltransferase |
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Putative glycosyltransferase |
| epsE |
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Gene: RBAM_031630: Family II glycosyltransferase/flagellar clutch |
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Gene: BLi03690: Family II glycosyltransferase/flagellar clutch |
Gene: BPUM_3079: Family II glycosyltransferase/flagellar clutch |
Gene: BSU34330: Family II glycosyltransferase/flagellar clutch |
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Family II glycosyltransferase/flagellar clutch |
| epsF |
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Gene: RBAM_031620: Putative glycosyltransferase |
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Gene: BLi03689: Putative glycosyltransferase |
Gene: BPUM_3078: Putative glycosyltransferase |
Gene: BSU34320: Putative glycosyltransferase |
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Gene: Pjdr2_0356: Putative glycosyltransferase |
Putative glycosyltransferase |
| epsG |
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Gene: RBAM_031610: Putative transmembrane protein |
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Gene: BLi03688: Putative transmembrane protein |
Gene: BPUM_3077: Putative transmembrane protein |
Gene: BSU34310: Putative transmembrane protein |
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Putative transmembrane protein |
| epsH |
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Gene: RBAM_031600: Glycosyltransferase |
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Gene: BLi03687: Glycosyltransferase |
Gene: BPUM_3076: Glycosyltransferase |
Gene: BSU34300: Glycosyltransferase |
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Glycosyltransferase |
| epsI |
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Gene: RBAM_031590: Putative pyruvyl transferase |
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Gene: BLi03686: Putative pyruvyl transferase |
Gene: BPUM_3075: Putative pyruvyl transferase |
Gene: BSU34290: Putative pyruvyl transferase |
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Putative pyruvyl transferase |
| epsJ |
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Gene: RBAM_031580: Putative glycosyltransferase involved in pellicle formation |
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Gene: BLi03685: Putative glycosyltransferase involved in pellicle formation |
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Gene: BSU34280: Putative glycosyltransferase involved in pellicle formation |
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Putative glycosyltransferase involved in pellicle formation |
| epsK |
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Gene: RBAM_031570: Uncharacterized membrane protein |
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Gene: BLi03684: Uncharacterized membrane protein |
Gene: BPUM_3074: Uncharacterized membrane protein |
Gene: BSU34265: Uncharacterized membrane protein |
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Uncharacterized membrane protein |
| epsL |
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Gene: RBAM_031560: Sugar transferase |
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Gene: BLi03683: Sugar transferase |
Gene: BPUM_3073: Sugar transferase |
Gene: BSU34250: Sugar transferase |
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Gene: OB2892: Sugar transferase |
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Sugar transferase |
| epsM |
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Gene: RBAM_031550: Putative O-acetyltransferase involved in pellicle formation |
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Gene: BLi03682: Putative O-acetyltransferase involved in pellicle formation |
Gene: BPUM_3072: Putative O-acetyltransferase involved in pellicle formation |
Gene: BSU34240: Putative O-acetyltransferase involved in pellicle formation |
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Gene: Pjdr2_0362: Putative O-acetyltransferase involved in pellicle formation |
Putative O-acetyltransferase involved in pellicle formation |
| epsN |
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Gene: RBAM_031540: Putative pyridoxal phosphate-dependent aminotransferase |
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Gene: BLi03681: Putative pyridoxal phosphate-dependent aminotransferase |
Gene: BPUM_3071: Putative pyridoxal phosphate-dependent aminotransferase |
Gene: BSU34230: Putative pyridoxal phosphate-dependent aminotransferase |
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Gene: OB2893: Putative pyridoxal phosphate-dependent aminotransferase |
Gene: Pjdr2_0363: Putative pyridoxal phosphate-dependent aminotransferase |
Putative pyridoxal phosphate-dependent aminotransferase |
| epsO |
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Gene: RBAM_031530: Putative pyruvyl transferase |
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Gene: BLi03680: Putative pyruvyl transferase |
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Gene: BSU34220: Putative pyruvyl transferase |
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Putative pyruvyl transferase |
| CRON 2. | ||||||||||||
| slr |
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*
Bacillus amyloliquefaciens FZB42 Site: position = -135 score = 6.26612 sequence = GTTCTTTTTAAAGAAC Gene: RBAM_031680: Transcriptional repressor of cell separation and motility/antirepressor of SinR |
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*
Bacillus licheniformis DSM 13 Site: position = -145 score = 6.13462 sequence = GTTCTTTTTAGAGAAC Gene: BLi03695: Transcriptional repressor of cell separation and motility/antirepressor of SinR |
*
Bacillus pumilus SAFR-032 Site: position = -148 score = 6.26612 sequence = GTTCTTTTTAAAGAAC Gene: BPUM_3084: Transcriptional repressor of cell separation and motility/antirepressor of SinR |
*
Bacillus subtilis subsp. subtilis str. 168 Site: position = -134 score = 6.00313 sequence = GTTCTCTTTAGAGAAC Gene: BSU34380: Transcriptional repressor of cell separation and motility/antirepressor of SinR |
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Transcriptional repressor of cell separation and motility/antirepressor of SinR |
| CRON 3. | ||||||||||||
| yqxM |
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*
Bacillus amyloliquefaciens FZB42 Site: position = -55 score = 6.13462 sequence = GTTCTTTAAAGAGAAC Gene: RBAM_022960: Lipoprotein for biofilm formation |
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Bacillus halodurans C-125 Site: position = -131 score = 5.66661 sequence = GTTCTTTATAAAAAAC Gene: BH2131: Lipoprotein for biofilm formation |
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Bacillus licheniformis DSM 13 Site: position = -55 score = 5.85493 sequence = GTTCTTTAAAACGAAC Gene: BLi02639: Lipoprotein for biofilm formation |
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Bacillus pumilus SAFR-032 Site: position = -41 score = 6.26612 sequence = GTTCTTTTTAAAGAAC Gene: BPUM_2196: Lipoprotein for biofilm formation |
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Bacillus subtilis subsp. subtilis str. 168 Site: position = -57 score = 6.13462 sequence = GTTCTTTAAAGAGAAC Gene: BSU24640: Lipoprotein for biofilm formation |
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Gene: OB2527: Lipoprotein for biofilm formation |
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Lipoprotein for biofilm formation |
| sipW |
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Gene: RBAM_022950: Signal peptidase SipW (EC 3.4.21.89), required for TasA secretion |
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Bacillus cereus ATCC 14579 Site: position = -71 score = 5.67783 sequence = GTTCTTGTTAAAGAAC Gene: BC1278: Signal peptidase SipW (EC 3.4.21.89), required for TasA secretion |
Gene: ABC0753: Signal peptidase SipW (EC 3.4.21.89), required for TasA secretion |
Gene: BH2130: Signal peptidase SipW (EC 3.4.21.89), required for TasA secretion |
Gene: BLi02638: Signal peptidase SipW (EC 3.4.21.89), required for TasA secretion |
Gene: BPUM_2195: Signal peptidase SipW (EC 3.4.21.89), required for TasA secretion |
Gene: BSU24630: Signal peptidase SipW (EC 3.4.21.89), required for TasA secretion |
|
3
Oceanobacillus iheyensis HTE831 Gene: OB1301: Signal peptidase SipW (EC 3.4.21.89), required for TasA secretion Gene: OB2526: Signal peptidase SipW (EC 3.4.21.89), required for TasA secretion Gene: OB0800: Signal peptidase SipW (EC 3.4.21.89), required for TasA secretion |
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Signal peptidase SipW (EC 3.4.21.89), required for TasA secretion |
| tasA |
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Gene: RBAM_022940: Stationary phase secreted protein TasA, major protein component of biofilm matrix |
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Gene: BLi02637: Stationary phase secreted protein TasA, major protein component of biofilm matrix |
Gene: BPUM_2194: Stationary phase secreted protein TasA, major protein component of biofilm matrix |
Gene: BSU24620: Stationary phase secreted protein TasA, major protein component of biofilm matrix |
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Gene: OB2528: Stationary phase secreted protein TasA, major protein component of biofilm matrix |
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Stationary phase secreted protein TasA, major protein component of biofilm matrix |
| cotN |
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Gene: BC1279: Secreted and spore coat-associated protein 3, similar to biofilm matrix component TasA and to camelysin |
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*3
Oceanobacillus iheyensis HTE831 Site: position = -186 score = 6.26612 sequence = GTTCTTTATAAAGAAC Gene: OB2529: Secreted and spore coat-associated protein 3, similar to biofilm matrix component TasA and to camelysin Gene: OB0801: Secreted and spore coat-associated protein 3, similar to biofilm matrix component TasA and to camelysin Gene: OB1302: Secreted and spore coat-associated protein 3, similar to biofilm matrix component TasA and to camelysin |
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Secreted and spore coat-associated protein 3, similar to biofilm matrix component TasA and to camelysin |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |