Regulon of SinR in Bacillus pumilus SAFR-032
| Regulator type: | Transcription factor |
| TF locus tag: | BPUM_2193 |
| Regulator family: | XRE |
| Regulation mode: | repressor |
| Biological process: | Biofilm formation |
| Effector: | SinI, antirepressor protein |
| Regulog: | SinR - Bacillales |
| Statistics of regulated genes: | |
| - Genes | 17 |
| - Operons | 3 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Bacillales
- By TF family - XRE
- By effector - SinI, antirepressor protein
- By pathway - Biofilm formation
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -41
Score: 6.3 Sequence: GTTCTTTTTAAAGAAC
Locus tag: BPUM_2196
Name: yqxM Funciton: Lipoprotein for biofilm formation
Locus tag: BPUM_2195
Name: sipW Funciton: Signal peptidase SipW (EC 3.4.21.89), required for TasA secretion
Locus tag: BPUM_2194
Name: tasA Funciton: Stationary phase secreted protein TasA, major protein component of biofilm matrix |
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yqxM
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Lipoprotein for biofilm formation
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sipW
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Signal peptidase SipW (EC 3.4.21.89), required for TasA secretion
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tasA
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Stationary phase secreted protein TasA, major protein component of biofilm matrix
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Position: -148
Score: 6.3 Sequence: GTTCTTTTTAAAGAAC
Locus tag: BPUM_3084
Name: slr Funciton: Transcriptional repressor of cell separation and motility/antirepressor of SinR |
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slr
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Transcriptional repressor of cell separation and motility/antirepressor of SinR
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Position: -125
Score: 6.3 Sequence: GTTCTTTAAAAAGAAC
Locus tag: BPUM_3083
Name: epsA Funciton: Possible capsular polysaccharide biosynthesis protein
Locus tag: BPUM_3082
Name: epsB Funciton: Capsular polysaccharide biosynthesis protein
Locus tag: BPUM_3081
Name: epsC Funciton: Capsular polysaccharide biosynthesis protein
Locus tag: BPUM_3080
Name: epsD Funciton: Putative glycosyltransferase
Locus tag: BPUM_3079
Name: epsE Funciton: Family II glycosyltransferase/flagellar clutch
Locus tag: BPUM_3078
Name: epsF Funciton: Putative glycosyltransferase
Locus tag: BPUM_3077
Name: epsG Funciton: Putative transmembrane protein
Locus tag: BPUM_3076
Name: epsH Funciton: Glycosyltransferase
Locus tag: BPUM_3075
Name: epsI Funciton: Putative pyruvyl transferase
Locus tag: BPUM_3074
Name: epsK Funciton: Uncharacterized membrane protein
Locus tag: BPUM_3073
Name: epsL Funciton: Sugar transferase
Locus tag: BPUM_3072
Name: epsM Funciton: Putative O-acetyltransferase involved in pellicle formation
Locus tag: BPUM_3071
Name: epsN Funciton: Putative pyridoxal phosphate-dependent aminotransferase |
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epsA
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Possible capsular polysaccharide biosynthesis protein
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epsB
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Capsular polysaccharide biosynthesis protein
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epsC
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Capsular polysaccharide biosynthesis protein
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epsD
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Putative glycosyltransferase
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epsE
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Family II glycosyltransferase/flagellar clutch
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epsF
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Putative glycosyltransferase
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epsG
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Putative transmembrane protein
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epsH
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Glycosyltransferase
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epsI
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Putative pyruvyl transferase
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epsK
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Uncharacterized membrane protein
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epsL
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Sugar transferase
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epsM
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Putative O-acetyltransferase involved in pellicle formation
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epsN
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Putative pyridoxal phosphate-dependent aminotransferase
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |