Regulog YdfI - Bacillales

Properties
Regulator type:	Transcription factor
Regulator family:	LuxR
Regulation mode:	activator
Biological process:	Metabolite transport
Effector:
Phylum:	Firmicutes
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 3 sites [see more]

Member of regulog collections

Statistics of regulated genes
Genome	Genes	Operons
Bacillus subtilis subsp. subtilis str. 168	1	1
Bacillus amyloliquefaciens FZB42	1	1
Bacillus pumilus SAFR-032
Bacillus licheniformis DSM 13	1	1
Anoxybacillus flavithermus WK1
Geobacillus kaustophilus HTA426
Bacillus cereus ATCC 14579
Bacillus halodurans C-125
Bacillus clausii KSM-K16
Oceanobacillus iheyensis HTE831
Paenibacillus sp. JDR-2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes												Function

CRON 1.
ydfJ	* Bacillus subtilis subsp. subtilis str. 168 Site: position = -97 score = 11.0616 sequence = GCCCAAACGTAC-(2)-GCCCGAATGTAC Gene: BSU05430: RND superfamily transporter	* Bacillus amyloliquefaciens FZB42 Site: position = -89 score = 10.5954 sequence = GCCCAAACGTAC-(2)-GCCCTTATGTAC Gene: RBAM_005940: RND superfamily transporter	Bacillus pumilus SAFR-032	* Bacillus licheniformis DSM 13 Site: position = -97 score = 11.0616 sequence = GCCCAAACGTAC-(2)-GCCCGAATGTAC Gene: BLi04067: RND superfamily transporter	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	Bacillus cereus ATCC 14579	Bacillus halodurans C-125	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	RND superfamily transporter

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
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	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --