Regulog AllR - Enterobacteriales

Properties
Regulator type:	Transcription factor
Regulator family:	IclR
Regulation mode:	repressor
Biological process:	Allantoin utilization
Effector:	Allantoin
Phylum:	Proteobacteria/gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 6 sites [see more]

Member of regulog collections

By taxonomy - Enterobacteriales
By TF family - IclR
By effector - Allantoin
By pathway - Allantoin utilization

Statistics of regulated genes
Genome	Genes	Operons
Escherichia coli str. K-12 substr. MG1655	10	3
Salmonella typhimurium LT2	12	3
Citrobacter koseri ATCC BAA-895
Klebsiella pneumoniae subsp. pneumoniae MGH 78578
Enterobacter sp. 638
Erwinia amylovora ATCC 49946
Yersinia pestis KIM
Serratia proteamaculans 568
Erwinia carotovora subsp. atroseptica SCRI1043
Edwardsiella tarda EIB202
Proteus mirabilis HI4320
Photorhabdus luminescens subsp. laumondii TTO1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes													Function

CRON 1.
allS	* Escherichia coli str. K-12 substr. MG1655 Site: position = -124 score = 6.58884 sequence = TTGGAATATTTTTCCAA Gene: b0504: DNA-binding transcriptional activator of the allD operon	* Salmonella typhimurium LT2 Site: position = -122 score = 6.58884 sequence = TTGGAATATTTTTCCAA Gene: STM0514: DNA-binding transcriptional activator of the allD operon	Citrobacter koseri ATCC BAA-895	Klebsiella pneumoniae subsp. pneumoniae MGH 78578	Enterobacter sp. 638	Erwinia amylovora ATCC 49946	Yersinia pestis KIM	Serratia proteamaculans 568	Erwinia carotovora subsp. atroseptica SCRI1043	Edwardsiella tarda EIB202	Proteus mirabilis HI4320	Photorhabdus luminescens subsp. laumondii TTO1	DNA-binding transcriptional activator of the allD operon

CRON 2.
allA	* Escherichia coli str. K-12 substr. MG1655 Site: position = -122 score = 6.58884 sequence = TTGGAAAAATATTCCAA Gene: b0505: ureidoglycolate hydrolase	* Salmonella typhimurium LT2 Site: position = -121 score = 6.58884 sequence = TTGGAAAAATATTCCAA Gene: STM0515: ureidoglycolate hydrolase	Citrobacter koseri ATCC BAA-895	Klebsiella pneumoniae subsp. pneumoniae MGH 78578	Enterobacter sp. 638	Erwinia amylovora ATCC 49946	Yersinia pestis KIM	Serratia proteamaculans 568	Erwinia carotovora subsp. atroseptica SCRI1043	Edwardsiella tarda EIB202	Proteus mirabilis HI4320	Photorhabdus luminescens subsp. laumondii TTO1	ureidoglycolate hydrolase
allR	Escherichia coli str. K-12 substr. MG1655 Gene: b0506: transcriptional repressor of allantoin utilization	Salmonella typhimurium LT2 Gene: STM0516: transcriptional repressor of allantoin utilization	Citrobacter koseri ATCC BAA-895	Klebsiella pneumoniae subsp. pneumoniae MGH 78578	Enterobacter sp. 638	Erwinia amylovora ATCC 49946	Yersinia pestis KIM	Serratia proteamaculans 568	Erwinia carotovora subsp. atroseptica SCRI1043	Edwardsiella tarda EIB202	Proteus mirabilis HI4320	Photorhabdus luminescens subsp. laumondii TTO1	transcriptional repressor of allantoin utilization

CRON 3.
gcl	* Escherichia coli str. K-12 substr. MG1655 Site: position = -37 score = 6.71196 sequence = TTGGAAAAATTTTCCAA Gene: b0507: glyoxylate carboligase	* Salmonella typhimurium LT2 Site: position = -37 score = 6.43703 sequence = TTGGAAACTTTTTCCAA Gene: STM0517: glyoxylate carboligase	Citrobacter koseri ATCC BAA-895	Klebsiella pneumoniae subsp. pneumoniae MGH 78578	Enterobacter sp. 638	Erwinia amylovora ATCC 49946	Yersinia pestis KIM	Serratia proteamaculans 568	Erwinia carotovora subsp. atroseptica SCRI1043	Edwardsiella tarda EIB202	Proteus mirabilis HI4320	Photorhabdus luminescens subsp. laumondii TTO1	glyoxylate carboligase
hyi	Escherichia coli str. K-12 substr. MG1655 Gene: b0508: hydroxypyruvate isomerase	Salmonella typhimurium LT2 Gene: STM0518: hydroxypyruvate isomerase	Citrobacter koseri ATCC BAA-895	Klebsiella pneumoniae subsp. pneumoniae MGH 78578	Enterobacter sp. 638	Erwinia amylovora ATCC 49946	Yersinia pestis KIM	Serratia proteamaculans 568	Erwinia carotovora subsp. atroseptica SCRI1043	Edwardsiella tarda EIB202	Proteus mirabilis HI4320	Photorhabdus luminescens subsp. laumondii TTO1	hydroxypyruvate isomerase
glxR	Escherichia coli str. K-12 substr. MG1655 Gene: b0509: tartronic semialdehyde reductase	Salmonella typhimurium LT2 Gene: STM0519: tartronic semialdehyde reductase	Citrobacter koseri ATCC BAA-895	Klebsiella pneumoniae subsp. pneumoniae MGH 78578	Enterobacter sp. 638	Erwinia amylovora ATCC 49946	Yersinia pestis KIM	Serratia proteamaculans 568	Erwinia carotovora subsp. atroseptica SCRI1043	Edwardsiella tarda EIB202	Proteus mirabilis HI4320	Photorhabdus luminescens subsp. laumondii TTO1	tartronic semialdehyde reductase
STM0520	Escherichia coli str. K-12 substr. MG1655	Salmonella typhimurium LT2 Gene: STM0520: putative permease	Citrobacter koseri ATCC BAA-895	Klebsiella pneumoniae subsp. pneumoniae MGH 78578	Enterobacter sp. 638	Erwinia amylovora ATCC 49946	Yersinia pestis KIM	Serratia proteamaculans 568	Erwinia carotovora subsp. atroseptica SCRI1043	Edwardsiella tarda EIB202	Proteus mirabilis HI4320	Photorhabdus luminescens subsp. laumondii TTO1	putative permease
ybbV	Escherichia coli str. K-12 substr. MG1655	Salmonella typhimurium LT2 Gene: STM0521: putative cytoplasmic protein	Citrobacter koseri ATCC BAA-895	Klebsiella pneumoniae subsp. pneumoniae MGH 78578	Enterobacter sp. 638	Erwinia amylovora ATCC 49946	Yersinia pestis KIM	Serratia proteamaculans 568	Erwinia carotovora subsp. atroseptica SCRI1043	Edwardsiella tarda EIB202	Proteus mirabilis HI4320	Photorhabdus luminescens subsp. laumondii TTO1	putative cytoplasmic protein
ybbW	Escherichia coli str. K-12 substr. MG1655 Gene: b0511: putative allantoin transporter, NCS1 family	Salmonella typhimurium LT2 Gene: STM0522: putative allantoin transporter, NCS1 family	Citrobacter koseri ATCC BAA-895	Klebsiella pneumoniae subsp. pneumoniae MGH 78578	Enterobacter sp. 638	Erwinia amylovora ATCC 49946	Yersinia pestis KIM	Serratia proteamaculans 568	Erwinia carotovora subsp. atroseptica SCRI1043	Edwardsiella tarda EIB202	Proteus mirabilis HI4320	Photorhabdus luminescens subsp. laumondii TTO1	putative allantoin transporter, NCS1 family
allB	Escherichia coli str. K-12 substr. MG1655 Gene: b0512: allantoinase	Salmonella typhimurium LT2 Gene: STM0523: allantoinase	Citrobacter koseri ATCC BAA-895	Klebsiella pneumoniae subsp. pneumoniae MGH 78578	Enterobacter sp. 638	Erwinia amylovora ATCC 49946	Yersinia pestis KIM	Serratia proteamaculans 568	Erwinia carotovora subsp. atroseptica SCRI1043	Edwardsiella tarda EIB202	Proteus mirabilis HI4320	Photorhabdus luminescens subsp. laumondii TTO1	allantoinase
ybbY	Escherichia coli str. K-12 substr. MG1655 Gene: b0513: putative allantoin transporter	Salmonella typhimurium LT2 Gene: STM0524: putative allantoin transporter	Citrobacter koseri ATCC BAA-895	Klebsiella pneumoniae subsp. pneumoniae MGH 78578	Enterobacter sp. 638	Erwinia amylovora ATCC 49946	Yersinia pestis KIM	Serratia proteamaculans 568	Erwinia carotovora subsp. atroseptica SCRI1043	Edwardsiella tarda EIB202	Proteus mirabilis HI4320	Photorhabdus luminescens subsp. laumondii TTO1	putative allantoin transporter
glxK	Escherichia coli str. K-12 substr. MG1655 Gene: b0514: glycerate kinase II	Salmonella typhimurium LT2 Gene: STM0525: glycerate kinase II	Citrobacter koseri ATCC BAA-895	Klebsiella pneumoniae subsp. pneumoniae MGH 78578	Enterobacter sp. 638	Erwinia amylovora ATCC 49946	Yersinia pestis KIM	Serratia proteamaculans 568	Erwinia carotovora subsp. atroseptica SCRI1043	Edwardsiella tarda EIB202	Proteus mirabilis HI4320	Photorhabdus luminescens subsp. laumondii TTO1	glycerate kinase II

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog AllR - Enterobacteriales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --