Regulog AllR - Enterobacteriales
| Regulator type: | Transcription factor |
| Regulator family: | IclR |
| Regulation mode: | repressor |
| Biological process: | Allantoin utilization |
| Effector: | Allantoin |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Enterobacteriales
- By TF family - IclR
- By effector - Allantoin
- By pathway - Allantoin utilization
| Genome | Genes | Operons |
|---|---|---|
| Escherichia coli str. K-12 substr. MG1655 | 10 | 3 |
| Salmonella typhimurium LT2 | 12 | 3 |
| Citrobacter koseri ATCC BAA-895 | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | ||
| Enterobacter sp. 638 | ||
| Erwinia amylovora ATCC 49946 | ||
| Yersinia pestis KIM | ||
| Serratia proteamaculans 568 | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ||
| Edwardsiella tarda EIB202 | ||
| Proteus mirabilis HI4320 | ||
| Photorhabdus luminescens subsp. laumondii TTO1 |
| Genes | Function | ||||||||||||
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| CRON 1. | |||||||||||||
| allS |
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Escherichia coli str. K-12 substr. MG1655 Site: position = -124 score = 6.58884 sequence = TTGGAATATTTTTCCAA Gene: b0504: DNA-binding transcriptional activator of the allD operon |
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Salmonella typhimurium LT2 Site: position = -122 score = 6.58884 sequence = TTGGAATATTTTTCCAA Gene: STM0514: DNA-binding transcriptional activator of the allD operon |
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DNA-binding transcriptional activator of the allD operon |
| CRON 2. | |||||||||||||
| allA |
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Escherichia coli str. K-12 substr. MG1655 Site: position = -122 score = 6.58884 sequence = TTGGAAAAATATTCCAA Gene: b0505: ureidoglycolate hydrolase |
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Salmonella typhimurium LT2 Site: position = -121 score = 6.58884 sequence = TTGGAAAAATATTCCAA Gene: STM0515: ureidoglycolate hydrolase |
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ureidoglycolate hydrolase |
| allR |
Gene: b0506: transcriptional repressor of allantoin utilization |
Gene: STM0516: transcriptional repressor of allantoin utilization |
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transcriptional repressor of allantoin utilization |
| CRON 3. | |||||||||||||
| gcl |
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Escherichia coli str. K-12 substr. MG1655 Site: position = -37 score = 6.71196 sequence = TTGGAAAAATTTTCCAA Gene: b0507: glyoxylate carboligase |
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Salmonella typhimurium LT2 Site: position = -37 score = 6.43703 sequence = TTGGAAACTTTTTCCAA Gene: STM0517: glyoxylate carboligase |
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glyoxylate carboligase |
| hyi |
Gene: b0508: hydroxypyruvate isomerase |
Gene: STM0518: hydroxypyruvate isomerase |
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hydroxypyruvate isomerase |
| glxR |
Gene: b0509: tartronic semialdehyde reductase |
Gene: STM0519: tartronic semialdehyde reductase |
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tartronic semialdehyde reductase |
| STM0520 |
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Gene: STM0520: putative permease |
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putative permease |
| ybbV |
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Gene: STM0521: putative cytoplasmic protein |
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putative cytoplasmic protein |
| ybbW |
Gene: b0511: putative allantoin transporter, NCS1 family |
Gene: STM0522: putative allantoin transporter, NCS1 family |
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putative allantoin transporter, NCS1 family |
| allB |
Gene: b0512: allantoinase |
Gene: STM0523: allantoinase |
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allantoinase |
| ybbY |
Gene: b0513: putative allantoin transporter |
Gene: STM0524: putative allantoin transporter |
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putative allantoin transporter |
| glxK |
Gene: b0514: glycerate kinase II |
Gene: STM0525: glycerate kinase II |
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glycerate kinase II |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |