Regulog Crp - Cyanobacteria
| Regulator type: | Transcription factor |
| Regulator family: | CRP |
| Regulation mode: | repressor (activator) |
| Biological process: | |
| Effector: | Cyclic 3',5'-AMP |
| Phylum: | Cyanobacteria |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Cyanobacteria
- By TF family - CRP
- By effector - Cyclic 3',5'-AMP
| Genome | Genes | Operons |
|---|---|---|
| Synechococcus sp. PCC 7002 | 6 | 5 |
| Synechocystis sp. PCC 6803 | 14 | 12 |
| Cyanothece sp. ATCC 51142 | 23 | 16 |
| Cyanothece sp. PCC 8801 | 21 | 16 |
| Cyanothece sp. PCC 7425 | 13 | 10 |
| Microcystis aeruginosa NIES-843 | 6 | 6 |
| Nostoc sp. PCC 7120 | 17 | 10 |
| Trichodesmium erythraeum IMS101 | 16 | 12 |
| Synechococcus elongatus PCC 7942 | 2 | 2 |
| Prochlorococcus marinus str. MIT 9313 | 3 | 3 |
| Synechococcus sp. JA-3-3Ab | 4 | 3 |
| Synechococcus sp. WH 8102 | 1 | 1 |
| Gloeobacter violaceus PCC 7421 | ||
| Thermosynechococcus elongatus BP-1 | 6 | 5 |
| Genes | Function | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||||||
| coxB |
Gene: SYNPCC7002_A1162: Cytochrome c oxidase subunit 2 (EC 1.9.3.1) |
Gene: slr1136: Cytochrome c oxidase subunit 2 (EC 1.9.3.1) |
*
Cyanothece sp. ATCC 51142 Site: position = -78 score = 3.73328 sequence = TGTGATAAAAAAGCCA Gene: cce_1977: Cytochrome c oxidase subunit 2 (EC 1.9.3.1) |
Gene: PCC8801_0567: Cytochrome c oxidase subunit 2 (EC 1.9.3.1) |
2
Cyanothece sp. PCC 7425 Gene: Cyan7425_1211: Cytochrome c oxidase subunit 2 (EC 1.9.3.1) Gene: Cyan7425_3958: Cytochrome c oxidase subunit 2 (EC 1.9.3.1) |
Gene: MAE_22930: Cytochrome c oxidase subunit 2 (EC 1.9.3.1) |
*2
Nostoc sp. PCC 7120 Gene: alr0950: Cytochrome c oxidase subunit 2 (EC 1.9.3.1) Site: position = -222 score = 3.0999 sequence = TCTGGAATAATTCCCC Gene: alr2514: Cytochrome c oxidase subunit 2 (EC 1.9.3.1) |
*
Trichodesmium erythraeum IMS101 Site: position = -193 score = 3.98704 sequence = TGTAACCTAAAACAAA Site: position = -93 score = 3.88004 sequence = TCTGAGAAATATCAAA Gene: Tery_1779: Cytochrome c oxidase subunit 2 (EC 1.9.3.1) |
Gene: Synpcc7942_2602: Cytochrome c oxidase subunit 2 (EC 1.9.3.1) |
Gene: PMT1341: Cytochrome c oxidase subunit 2 (EC 1.9.3.1) |
Gene: CYA_1514: Cytochrome c oxidase subunit 2 (EC 1.9.3.1) |
Gene: SYNW1861: Cytochrome c oxidase subunit 2 (EC 1.9.3.1) |
Gene: gvip300: Cytochrome c oxidase subunit 2 (EC 1.9.3.1) |
Gene: null: Cytochrome c oxidase subunit 2 (EC 1.9.3.1) |
Cytochrome c oxidase subunit 2 (EC 1.9.3.1) |
| coxA |
Gene: SYNPCC7002_A1163: Cytochrome c oxidase subunit 1 (EC 1.9.3.1) |
Gene: slr1137: Cytochrome c oxidase subunit 1 (EC 1.9.3.1) |
Gene: cce_1976: Cytochrome c oxidase subunit 1 (EC 1.9.3.1) |
Gene: PCC8801_0568: Cytochrome c oxidase subunit 1 (EC 1.9.3.1) |
2
Cyanothece sp. PCC 7425 Gene: Cyan7425_1212: Cytochrome c oxidase subunit 1 (EC 1.9.3.1) Gene: Cyan7425_3957: Cytochrome c oxidase subunit 1 (EC 1.9.3.1) |
Gene: MAE_22940: Cytochrome c oxidase subunit 1 (EC 1.9.3.1) |
2
Nostoc sp. PCC 7120 Gene: alr0951: Cytochrome c oxidase subunit 1 (EC 1.9.3.1) Gene: alr2515: Cytochrome c oxidase subunit 1 (EC 1.9.3.1) |
Gene: Tery_1778: Cytochrome c oxidase subunit 1 (EC 1.9.3.1) |
Gene: Synpcc7942_2603: Cytochrome c oxidase subunit 1 (EC 1.9.3.1) |
Gene: PMT1342: Cytochrome c oxidase subunit 1 (EC 1.9.3.1) |
Gene: CYA_1513: Cytochrome c oxidase subunit 1 (EC 1.9.3.1) |
Gene: SYNW1862: Cytochrome c oxidase subunit 1 (EC 1.9.3.1) |
Gene: gvip299: Cytochrome c oxidase subunit 1 (EC 1.9.3.1) |
Gene: null: Cytochrome c oxidase subunit 1 (EC 1.9.3.1) |
Cytochrome c oxidase subunit 1 (EC 1.9.3.1) |
| coxC |
Gene: SYNPCC7002_A1164: Cytochrome c oxidase subunit 3 (EC 1.9.3.1) |
Gene: slr1138: Cytochrome c oxidase subunit 3 (EC 1.9.3.1) |
Gene: cce_1975: Cytochrome c oxidase subunit 3 (EC 1.9.3.1) |
Gene: PCC8801_0569: Cytochrome c oxidase subunit 3 (EC 1.9.3.1) |
2
Cyanothece sp. PCC 7425 Gene: Cyan7425_1213: Cytochrome c oxidase subunit 3 (EC 1.9.3.1) Gene: Cyan7425_3956: Cytochrome c oxidase subunit 3 (EC 1.9.3.1) |
Gene: MAE_22950: Cytochrome c oxidase subunit 3 (EC 1.9.3.1) |
Gene: alr2516: Cytochrome c oxidase subunit 3 (EC 1.9.3.1) |
Gene: Tery_1777: Cytochrome c oxidase subunit 3 (EC 1.9.3.1) |
Gene: Synpcc7942_2604: Cytochrome c oxidase subunit 3 (EC 1.9.3.1) |
Gene: PMT1343: Cytochrome c oxidase subunit 3 (EC 1.9.3.1) |
Gene: CYA_1512: Cytochrome c oxidase subunit 3 (EC 1.9.3.1) |
Gene: SYNW1863: Cytochrome c oxidase subunit 3 (EC 1.9.3.1) |
Gene: gvip298: Cytochrome c oxidase subunit 3 (EC 1.9.3.1) |
Gene: null: Cytochrome c oxidase subunit 3 (EC 1.9.3.1) |
Cytochrome c oxidase subunit 3 (EC 1.9.3.1) |
| CRON 2. | |||||||||||||||
| SYNPCC7002_A0129 |
Gene: SYNPCC7002_A0129: Transcription regulator, AbrB family |
|
|
|
|
Gene: MAE_35130: Transcription regulator, AbrB family |
Gene: all2080: Transcription regulator, AbrB family |
Gene: Tery_1859: Transcription regulator, AbrB family |
*
Synechococcus elongatus PCC 7942 Site: position = -1 score = 4.11762 sequence = AATGACATCAATCACG Gene: Synpcc7942_1969: Transcription regulator, AbrB family |
*
Prochlorococcus marinus str. MIT 9313 Site: position = -222 score = 3.76819 sequence = AGTGATCAGAATGCCC Gene: PMT0464: Transcription regulator, AbrB family |
Gene: CYA_0162: Transcription regulator, AbrB family |
|
|
*
Thermosynechococcus elongatus BP-1 Site: position = -437 score = 4.16121 sequence = TGTGAGCATATTCAAC Gene: null: Transcription regulator, AbrB family |
Transcription regulator, AbrB family |
| CRON 3. | |||||||||||||||
| rlpA |
Gene: SYNPCC7002_A0344: Predicted lipoprotein A |
Gene: slr0423: Predicted lipoprotein A |
*
Cyanothece sp. ATCC 51142 Site: position = -215 score = 4.00951 sequence = TGTTAACTAGATCACA Gene: cce_3687: Predicted lipoprotein A |
*
Cyanothece sp. PCC 8801 Site: position = -239 score = 3.83208 sequence = GGTGAAATTAGGCAAA Gene: PCC8801_1079: Predicted lipoprotein A |
*
Cyanothece sp. PCC 7425 Site: position = -328 score = 4.21465 sequence = CGTGATTCGGATCACA Gene: Cyan7425_3340: Predicted lipoprotein A |
Gene: MAE_42190: Predicted lipoprotein A |
Gene: alr2935: Predicted lipoprotein A |
|
Gene: Synpcc7942_1152: Predicted lipoprotein A |
Gene: PMT1690: Predicted lipoprotein A |
Gene: CYA_2884: Predicted lipoprotein A |
Gene: SYNW2028: Predicted lipoprotein A |
Gene: glr1148: Predicted lipoprotein A |
*
Thermosynechococcus elongatus BP-1 Site: position = -317 score = 4.80335 sequence = GGTGATCTGAGTCACA Gene: tlr0333: Predicted lipoprotein A |
Predicted lipoprotein A |
| CRON 4. | |||||||||||||||
| ackA |
|
Gene: sll1299: Acetate kinase (EC 2.7.2.1) |
*2
Cyanothece sp. ATCC 51142 Site: position = -23 score = 3.59212 sequence = CATGATTTTATTCAGA Gene: cce_0800: Acetate kinase (EC 2.7.2.1) Gene: cce_5183: Acetate kinase (EC 2.7.2.1) |
*
Cyanothece sp. PCC 8801 Site: position = -203 score = 4.33407 sequence = GGTGACAGAAATCAAA Gene: PCC8801_3887: Acetate kinase (EC 2.7.2.1) |
Gene: Cyan7425_2207: Acetate kinase (EC 2.7.2.1) |
*
Microcystis aeruginosa NIES-843 Site: position = -44 score = 3.63095 sequence = TTTGATTATGATCGCC Gene: MAE_02800: Acetate kinase (EC 2.7.2.1) |
*
Nostoc sp. PCC 7120 Site: position = -44 score = 4.38041 sequence = AATGATATAGCTCACA Gene: all2561: Acetate kinase (EC 2.7.2.1) |
|
*
Synechococcus elongatus PCC 7942 Site: position = -63 score = 4.24484 sequence = TGTGATTAAGCACACA Gene: Synpcc7942_2079: Acetate kinase (EC 2.7.2.1) |
|
Gene: CYA_2688: Acetate kinase (EC 2.7.2.1) |
Gene: SYNW0155: Acetate kinase (EC 2.7.2.1) |
Gene: glr1000: Acetate kinase (EC 2.7.2.1) |
Gene: tlr2340: Acetate kinase (EC 2.7.2.1) |
Acetate kinase (EC 2.7.2.1) |
| CRON 5. | |||||||||||||||
| chlA-II |
Gene: SYNPCC7002_A1992: Magnesium-protoporphyrin IX monomethyl ester cyclase 2 (EC 1.14.13.81) |
*
Synechocystis sp. PCC 6803 Site: position = -403 score = 4.75912 sequence = TGTGAGAATAATCACA Gene: sll1874: Magnesium-protoporphyrin IX monomethyl ester cyclase 2 (EC 1.14.13.81) |
Gene: cce_4412: Magnesium-protoporphyrin IX monomethyl ester cyclase 2 (EC 1.14.13.81) |
*
Cyanothece sp. PCC 8801 Site: position = -250 score = 4.30686 sequence = TTTGATTTAATTCAAC Gene: PCC8801_3705: Magnesium-protoporphyrin IX monomethyl ester cyclase 2 (EC 1.14.13.81) |
Gene: Cyan7425_4781: Magnesium-protoporphyrin IX monomethyl ester cyclase 2 (EC 1.14.13.81) |
*
Microcystis aeruginosa NIES-843 Site: position = -45 score = 3.69203 sequence = TATGTTTAAAATCCTA Gene: MAE_46620: Magnesium-protoporphyrin IX monomethyl ester cyclase 2 (EC 1.14.13.81) |
2
Nostoc sp. PCC 7120 Gene: alr1358: Magnesium-protoporphyrin IX monomethyl ester cyclase 2 (EC 1.14.13.81) Gene: all1880: Magnesium-protoporphyrin IX monomethyl ester cyclase 2 (EC 1.14.13.81) |
|
|
|
|
Gene: SYNW1198: Magnesium-protoporphyrin IX monomethyl ester cyclase 2 (EC 1.14.13.81) |
|
Gene: tlr1722: Magnesium-protoporphyrin IX monomethyl ester cyclase 2 (EC 1.14.13.81) |
Magnesium-protoporphyrin IX monomethyl ester cyclase 2 (EC 1.14.13.81) |
| CRON 6. | |||||||||||||||
| crp |
Gene: SYNPCC7002_A1789: cAMP responsive transcription regulator, Fnr-Crp family |
*2
Synechocystis sp. PCC 6803 Site: position = -159 score = 4.00871 sequence = AGTGAAAAAACTCACT Gene: sll1371: cAMP responsive transcription regulator, Fnr-Crp family Site: position = -106 score = 4.46334 sequence = TGTGACAATAAACACC Gene: sll1924: cAMP responsive transcription regulator, Fnr-Crp family |
Gene: cce_1423: cAMP responsive transcription regulator, Fnr-Crp family |
Gene: PCC8801_0890: cAMP responsive transcription regulator, Fnr-Crp family |
Gene: Cyan7425_1533: cAMP responsive transcription regulator, Fnr-Crp family |
Gene: MAE_49390: cAMP responsive transcription regulator, Fnr-Crp family |
Gene: alr0295: cAMP responsive transcription regulator, Fnr-Crp family |
*
Trichodesmium erythraeum IMS101 Site: position = -259 score = 4.15415 sequence = CATGATCAAAGTCAAG Gene: Tery_1557: cAMP responsive transcription regulator, Fnr-Crp family |
Gene: Synpcc7942_1243: cAMP responsive transcription regulator, Fnr-Crp family |
Gene: PMT2151: cAMP responsive transcription regulator, Fnr-Crp family |
Gene: CYA_1331: cAMP responsive transcription regulator, Fnr-Crp family |
|
|
Gene: null: cAMP responsive transcription regulator, Fnr-Crp family |
cAMP responsive transcription regulator, Fnr-Crp family |
| sll1372 |
Gene: SYNPCC7002_A1790: Predicted membrane protein |
Gene: sll1372: Predicted membrane protein |
Gene: cce_1422: Predicted membrane protein |
Gene: PCC8801_0891: Predicted membrane protein |
Gene: Cyan7425_0341: Predicted membrane protein |
|
Gene: alr0296: Predicted membrane protein |
Gene: Tery_1556: Predicted membrane protein |
Gene: Synpcc7942_2269: Predicted membrane protein |
Gene: PMT1351: Predicted membrane protein |
Gene: CYA_0813: Predicted membrane protein |
Gene: SYNW1870: Predicted membrane protein |
|
Gene: tlr1402: Predicted membrane protein |
Predicted membrane protein |
| CRON 7. | |||||||||||||||
| sigF |
*
Synechococcus sp. PCC 7002 Site: position = -223 score = 4.31142 sequence = TTTGATAAAAATCAAT Gene: SYNPCC7002_A1924: RNA polymerase sigma-37 |
Gene: slr1564: RNA polymerase sigma-37 |
Gene: cce_2566: RNA polymerase sigma-37 |
*
Cyanothece sp. PCC 8801 Site: position = -271 score = 3.66906 sequence = AGTGACCTAAATTCCG Gene: PCC8801_4329: RNA polymerase sigma-37 |
*
Cyanothece sp. PCC 7425 Site: position = -91 score = 4.35814 sequence = TGTGTTCTAGATCACT Gene: Cyan7425_3949: RNA polymerase sigma-37 |
Gene: MAE_52920: RNA polymerase sigma-37 |
Gene: all3853: RNA polymerase sigma-37 |
*
Trichodesmium erythraeum IMS101 Site: position = -118 score = 4.05575 sequence = TGTGTTTGATATCACA Gene: Tery_3916: RNA polymerase sigma-37 |
Gene: Synpcc7942_1510: RNA polymerase sigma-37 |
|
Gene: CYA_0597: RNA polymerase sigma-37 |
|
|
*
Thermosynechococcus elongatus BP-1 Site: position = -174 score = 4.66581 sequence = TGTGGTCAAGATCACA Gene: null: RNA polymerase sigma-37 |
RNA polymerase sigma-37 |
| CRON 8. | |||||||||||||||
| cupA |
*
Synechococcus sp. PCC 7002 Site: position = -300 score = 3.95983 sequence = CGTGATTTTGCTCAAC Gene: SYNPCC7002_A0174: Carbon dioxide hydration protein |
Gene: sll1734: Carbon dioxide hydration protein |
Gene: cce_0605: Carbon dioxide hydration protein |
Gene: PCC8801_4250: Carbon dioxide hydration protein |
*
Cyanothece sp. PCC 7425 Site: position = -303 score = 4.67784 sequence = TGTGATTTTGATCAAC Gene: Cyan7425_4859: Carbon dioxide hydration protein |
*
Microcystis aeruginosa NIES-843 Site: position = 5 score = 4.04709 sequence = TGGGACATTAATCAAA Gene: MAE_15160: Carbon dioxide hydration protein |
Gene: alr4158: Carbon dioxide hydration protein |
|
Gene: Synpcc7942_2093: Carbon dioxide hydration protein |
|
*
Synechococcus sp. JA-3-3Ab Site: position = -325 score = 4.26414 sequence = TGTGATTTTGCTCAAC Gene: CYA_0638: Carbon dioxide hydration protein |
|
Gene: gvip134: Carbon dioxide hydration protein |
Gene: tlr0906: Carbon dioxide hydration protein |
Carbon dioxide hydration protein |
| cupS |
Gene: SYNPCC7002_A0175: Carbon dioxide uptake protein |
Gene: sll1735: Carbon dioxide uptake protein |
Gene: cce_1049: Carbon dioxide uptake protein |
*
Cyanothece sp. PCC 8801 Site: position = -199 score = 4.20851 sequence = ACTGATTTAATTCACT Gene: PCC8801_1006: Carbon dioxide uptake protein |
Gene: Cyan7425_4858: Carbon dioxide uptake protein |
Gene: MAE_54040: Carbon dioxide uptake protein |
*
Nostoc sp. PCC 7120 Site: position = -62 score = 4.27783 sequence = TGTGATAAAAATTAAA Site: position = -141 score = 4.22746 sequence = TTTGATAATTATCATA Gene: alr1320: Carbon dioxide uptake protein |
|
|
|
Gene: CYA_0636: Carbon dioxide uptake protein |
|
Gene: glr1006: Carbon dioxide uptake protein |
Gene: null: Carbon dioxide uptake protein |
Carbon dioxide uptake protein |
| CRON 9. | |||||||||||||||
| apcC |
Gene: SYNPCC7002_A1928: Phycobilisome linker polypeptide, allophycocyanin-associated |
Gene: ssr3383: Phycobilisome linker polypeptide, allophycocyanin-associated |
*
Cyanothece sp. ATCC 51142 Site: position = 5 score = 4.05882 sequence = AATGTTTAAAGTCACC Gene: cce_2911: Phycobilisome linker polypeptide, allophycocyanin-associated |
*
Cyanothece sp. PCC 8801 Site: position = 5 score = 3.87731 sequence = GATGTTTAAAGTCACC Gene: PCC8801_2788: Phycobilisome linker polypeptide, allophycocyanin-associated |
Gene: Cyan7425_4996: Phycobilisome linker polypeptide, allophycocyanin-associated |
*
Microcystis aeruginosa NIES-843 Site: position = 5 score = 4.13621 sequence = GATGTTCAAAATCACC Gene: MAE_10240: Phycobilisome linker polypeptide, allophycocyanin-associated |
Gene: asr0023: Phycobilisome linker polypeptide, allophycocyanin-associated |
*
Trichodesmium erythraeum IMS101 Site: position = 5 score = 4.15511 sequence = AATGTTTAAGATCACA Gene: Tery_3647: Phycobilisome linker polypeptide, allophycocyanin-associated |
Gene: Synpcc7942_0325: Phycobilisome linker polypeptide, allophycocyanin-associated |
|
*
Synechococcus sp. JA-3-3Ab Site: position = 5 score = 3.73248 sequence = CATGTTTAAGATCACG Gene: CYA_2225: Phycobilisome linker polypeptide, allophycocyanin-associated |
*
Synechococcus sp. WH 8102 Site: position = 5 score = 3.92608 sequence = GTTGTTCAAAGTCACC Gene: SYNW0483: Phycobilisome linker polypeptide, allophycocyanin-associated |
2
Gloeobacter violaceus PCC 7421 Gene: gvip184: Phycobilisome linker polypeptide, allophycocyanin-associated Gene: gvip174: Phycobilisome linker polypeptide, allophycocyanin-associated |
*
Thermosynechococcus elongatus BP-1 Site: position = -233 score = 3.62587 sequence = CATGAAAGAAGTCACC Gene: null: Phycobilisome linker polypeptide, allophycocyanin-associated |
Phycobilisome linker polypeptide, allophycocyanin-associated |
| CRON 10. | |||||||||||||||
| sufR |
Gene: SYNPCC7002_A1815: Iron-sulfur cluster biogenesis regulator, DeoR family |
Gene: sll0088: Iron-sulfur cluster biogenesis regulator, DeoR family |
*
Cyanothece sp. ATCC 51142 Site: position = -95 score = 3.88898 sequence = TGTTGTCAAAGTCACA Gene: cce_0683: Iron-sulfur cluster biogenesis regulator, DeoR family |
*
Cyanothece sp. PCC 8801 Site: position = -41 score = 3.82281 sequence = GTTGATTTAAGTCCTA Gene: PCC8801_0414: Iron-sulfur cluster biogenesis regulator, DeoR family |
Gene: Cyan7425_3451: Iron-sulfur cluster biogenesis regulator, DeoR family |
*
Microcystis aeruginosa NIES-843 Site: position = -128 score = 3.69999 sequence = TGTTGTCAAAGTCACG Gene: MAE_23100: Iron-sulfur cluster biogenesis regulator, DeoR family |
*
Nostoc sp. PCC 7120 Site: position = -42 score = 3.66096 sequence = TGTTGTCAAAGTCAAA Gene: all2491: Iron-sulfur cluster biogenesis regulator, DeoR family |
Gene: Tery_4354: Iron-sulfur cluster biogenesis regulator, DeoR family |
Gene: Synpcc7942_1733: Iron-sulfur cluster biogenesis regulator, DeoR family |
*
Prochlorococcus marinus str. MIT 9313 Site: position = -71 score = 3.87094 sequence = CCTGATCTAAGGCAAC Gene: PMT1607: Iron-sulfur cluster biogenesis regulator, DeoR family |
Gene: CYA_2189: Iron-sulfur cluster biogenesis regulator, DeoR family |
Gene: SYNW0317: Iron-sulfur cluster biogenesis regulator, DeoR family |
|
Gene: tlr0491: Iron-sulfur cluster biogenesis regulator, DeoR family |
Iron-sulfur cluster biogenesis regulator, DeoR family |
| CRON 11. | |||||||||||||||
| SYNPCC7002_A0687 |
Gene: SYNPCC7002_A0687: Conserved hypothetical protein |
*
Synechocystis sp. PCC 6803 Site: position = -56 score = 4.09661 sequence = TTTGATCAAAGTCCTA Gene: slr0013: Conserved hypothetical protein |
*
Cyanothece sp. ATCC 51142 Site: position = -137 score = 3.83478 sequence = TTTGACTTAAATAACC Gene: cce_3288: Conserved hypothetical protein |
*
Cyanothece sp. PCC 8801 Site: position = -153 score = 3.78484 sequence = TTTGATCTCGATCATT Gene: PCC8801_0091: Conserved hypothetical protein |
Gene: Cyan7425_1612: Conserved hypothetical protein |
Gene: MAE_46800: Conserved hypothetical protein |
Gene: alr4373: Conserved hypothetical protein |
Gene: Tery_2251: Conserved hypothetical protein |
Gene: Synpcc7942_1932: Conserved hypothetical protein |
*
Prochlorococcus marinus str. MIT 9313 Site: position = 17 score = 3.74245 sequence = TTTGAAACAATTCACC Gene: PMT0719: Conserved hypothetical protein |
Gene: CYA_1016: Conserved hypothetical protein |
Gene: SYNW1251: Conserved hypothetical protein |
Gene: glr4266: Conserved hypothetical protein |
Gene: tlr0729: Conserved hypothetical protein |
Conserved hypothetical protein |
| CRON 12. | |||||||||||||||
| ppa |
Gene: SYNPCC7002_A1228: inorganic pyrophosphatase |
Gene: slr1622: inorganic pyrophosphatase |
*
Cyanothece sp. ATCC 51142 Site: position = -265 score = 4.5421 sequence = TGTGATTATTATCAAA Site: position = -104 score = 4.41084 sequence = TGTGATTATTATCAAC Gene: cce_4329: inorganic pyrophosphatase |
*
Cyanothece sp. PCC 8801 Site: position = -177 score = 3.95437 sequence = TGTGATACTCATCATA Gene: PCC8801_2042: inorganic pyrophosphatase |
*
Cyanothece sp. PCC 7425 Site: position = -273 score = 3.70376 sequence = ACTGATTAAGGGCACT Gene: Cyan7425_1645: inorganic pyrophosphatase |
Gene: MAE_47020: inorganic pyrophosphatase |
*
Nostoc sp. PCC 7120 Site: position = -160 score = 3.71295 sequence = TGTGATATTTTTCCAC Gene: all3570: inorganic pyrophosphatase |
*
Trichodesmium erythraeum IMS101 Site: position = -237 score = 3.91078 sequence = AATGATAGAGTTCACG Gene: Tery_1519: inorganic pyrophosphatase |
Gene: Synpcc7942_1383: inorganic pyrophosphatase |
Gene: PMT1257: inorganic pyrophosphatase |
Gene: CYA_0251: inorganic pyrophosphatase |
Gene: SYNW1769: inorganic pyrophosphatase |
Gene: glr4227: inorganic pyrophosphatase |
Gene: null: inorganic pyrophosphatase |
inorganic pyrophosphatase |
| CRON 13. | |||||||||||||||
| nifX |
|
|
Gene: cce_0565: Nitrogen fixation protein |
*
Cyanothece sp. PCC 8801 Site: position = 21 score = 4.26022 sequence = AGTGACAATGTTCATA Gene: PCC8801_1790: Nitrogen fixation protein |
Gene: Cyan7425_4798: Nitrogen fixation protein |
|
*
Nostoc sp. PCC 7120 Site: position = 21 score = 4.25267 sequence = AGTGACAGAATTCATA Gene: all1436: Nitrogen fixation protein |
*
Trichodesmium erythraeum IMS101 Site: position = 21 score = 4.27724 sequence = ACTGATTTTATTCATA Gene: Tery_4140: Nitrogen fixation protein |
|
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Nitrogen fixation protein |
| nifK1 |
|
|
Gene: cce_0566: Nitrogen fixation protein |
Gene: PCC8801_1791: Nitrogen fixation protein |
Gene: Cyan7425_4799: Nitrogen fixation protein |
|
Gene: all1435: Nitrogen fixation protein |
Gene: Tery_4141: Nitrogen fixation protein |
|
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Gene: CYA_1837: Nitrogen fixation protein |
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Nitrogen fixation protein |
| nifK2 |
|
|
*
Cyanothece sp. ATCC 51142 Site: position = 12 score = 4.20535 sequence = ACTGATAATAATCCCA Gene: cce_0567: Nitrogen fixation protein |
Gene: PCC8801_1792: Nitrogen fixation protein |
Gene: Cyan7425_4800: Nitrogen fixation protein |
|
Gene: asl1434: Nitrogen fixation protein |
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Gene: CYA_1838: Nitrogen fixation protein |
|
|
|
Nitrogen fixation protein |
| nifW |
|
|
*
Cyanothece sp. ATCC 51142 Site: position = -221 score = 4.20535 sequence = ACTGATAATAATCCCA Site: position = -53 score = 4.05683 sequence = CGTGAGTTAGATCAAC Gene: cce_0568: Nitrogenase-stabilizing/protective protein |
Gene: PCC8801_1793: Nitrogenase-stabilizing/protective protein |
Gene: Cyan7425_4801: Nitrogenase-stabilizing/protective protein |
|
Gene: all1433: Nitrogenase-stabilizing/protective protein |
Gene: Tery_4142: Nitrogenase-stabilizing/protective protein |
|
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Gene: CYA_1839: Nitrogenase-stabilizing/protective protein |
|
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|
Nitrogenase-stabilizing/protective protein |
| hesA |
|
|
Gene: cce_0569: Nitrogen fixation related protein |
Gene: PCC8801_1794: Nitrogen fixation related protein |
Gene: Cyan7425_4802: Nitrogen fixation related protein |
|
Gene: all1432: Nitrogen fixation related protein |
*
Trichodesmium erythraeum IMS101 Site: position = -98 score = 4.1804 sequence = AGTGACTCAAGTCAAC Gene: Tery_4143: Nitrogen fixation related protein |
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Nitrogen fixation related protein |
| hesB |
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Gene: cce_0570: Nitrogen fixation related protein |
Gene: PCC8801_1795: Nitrogen fixation related protein |
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Cyanothece sp. PCC 7425 Site: position = -227 score = 4.15441 sequence = AGCGATCAAAATCATC Gene: Cyan7425_4803: Nitrogen fixation related protein |
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Gene: all1431: Nitrogen fixation related protein |
Gene: Tery_4144: Nitrogen fixation related protein |
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Nitrogen fixation related protein |
| CRON 14. | |||||||||||||||
| Cyan7425_4795 |
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Cyanothece sp. PCC 7425 Site: position = -208 score = 3.77547 sequence = TCTGAGCTGAAACACG Gene: Cyan7425_4795: Mo-dependent nitrogenase family protein |
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Nostoc sp. PCC 7120 Site: position = -343 score = 3.13226 sequence = GATGAAATGGATCGCA Gene: all1439: Mo-dependent nitrogenase family protein |
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Mo-dependent nitrogenase family protein |
| CRON 15. | |||||||||||||||
| nifB |
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Cyanothece sp. ATCC 51142 Site: position = -123 score = 3.99619 sequence = GGTGGTATAAATGACA Gene: cce_0554: FeMo nitrogenase cofactor biosynthesis protein |
Gene: PCC8801_1780: FeMo nitrogenase cofactor biosynthesis protein |
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Cyanothece sp. PCC 7425 Site: position = -40 score = 3.92179 sequence = ACTGTTATAAAGCACC Gene: Cyan7425_2361: FeMo nitrogenase cofactor biosynthesis protein |
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Nostoc sp. PCC 7120 Site: position = -299 score = 3.14452 sequence = ACTGCTATAAATCTTA Gene: all1517: FeMo nitrogenase cofactor biosynthesis protein |
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Trichodesmium erythraeum IMS101 Site: position = -356 score = 3.69485 sequence = TATGACTTATAGCATG Gene: Tery_4133: FeMo nitrogenase cofactor biosynthesis protein |
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Gene: CYA_1828: FeMo nitrogenase cofactor biosynthesis protein |
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FeMo nitrogenase cofactor biosynthesis protein |
| cce_0555 |
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Gene: cce_0555: Conserved hypothetical protein, putatuve subunit of nitrogenase |
Gene: PCC8801_1781: Conserved hypothetical protein, putatuve subunit of nitrogenase |
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Conserved hypothetical protein, putatuve subunit of nitrogenase |
| cce_0556 |
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Gene: cce_0556: 4Fe-4S ferredoxin subunit of nitrogenase |
Gene: PCC8801_1782: 4Fe-4S ferredoxin subunit of nitrogenase |
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4Fe-4S ferredoxin subunit of nitrogenase |
| nifS |
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Gene: cce_0557: Cysteine desulfurase (EC 2.8.1.7) |
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Cyanothece sp. PCC 8801 Site: position = -80 score = 3.85589 sequence = TTTGAAAATTATCACC Gene: PCC8801_1783: Cysteine desulfurase (EC 2.8.1.7) |
Gene: Cyan7425_2362: Cysteine desulfurase (EC 2.8.1.7) |
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Gene: all1457: Cysteine desulfurase (EC 2.8.1.7) |
Gene: Tery_4134: Cysteine desulfurase (EC 2.8.1.7) |
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Gene: CYA_1826: Cysteine desulfurase (EC 2.8.1.7) |
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Cysteine desulfurase (EC 2.8.1.7) |
| nifU |
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Gene: cce_0558: Nitrogen fixation protein |
Gene: PCC8801_1784: Nitrogen fixation protein |
Gene: Cyan7425_2363: Nitrogen fixation protein |
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Gene: all1456: Nitrogen fixation protein |
Gene: Tery_4135: Nitrogen fixation protein |
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Gene: CYA_1825: Nitrogen fixation protein |
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Nitrogen fixation protein |
| CRON 16. | |||||||||||||||
| serS |
Gene: SYNPCC7002_A2328: Seryl-tRNA synthetase (EC 6.1.1.11) |
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Synechocystis sp. PCC 6803 Site: position = -211 score = 3.6212 sequence = ATTGATAGAAGGCACT Gene: slr1703: Seryl-tRNA synthetase (EC 6.1.1.11) |
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Cyanothece sp. ATCC 51142 Site: position = -170 score = 3.99029 sequence = GTTGATAAAGTTCATA Gene: cce_0927: Seryl-tRNA synthetase (EC 6.1.1.11) |
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Cyanothece sp. PCC 8801 Site: position = -155 score = 3.67233 sequence = TTTGATCAATTTGACA Gene: PCC8801_3186: Seryl-tRNA synthetase (EC 6.1.1.11) |
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Cyanothece sp. PCC 7425 Site: position = -420 score = 3.65031 sequence = TGTGATACATCACACC Gene: Cyan7425_4645: Seryl-tRNA synthetase (EC 6.1.1.11) |
Gene: MAE_13050: Seryl-tRNA synthetase (EC 6.1.1.11) |
Gene: all3976: Seryl-tRNA synthetase (EC 6.1.1.11) |
Gene: Tery_3523: Seryl-tRNA synthetase (EC 6.1.1.11) |
Gene: Synpcc7942_0449: Seryl-tRNA synthetase (EC 6.1.1.11) |
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Gene: CYA_0247: Seryl-tRNA synthetase (EC 6.1.1.11) |
Gene: SYNW1894: Seryl-tRNA synthetase (EC 6.1.1.11) |
Gene: gvip075: Seryl-tRNA synthetase (EC 6.1.1.11) |
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Thermosynechococcus elongatus BP-1 Site: position = 3 score = 4.21046 sequence = ATTGATCTAAAACAAC Gene: null: Seryl-tRNA synthetase (EC 6.1.1.11) |
Seryl-tRNA synthetase (EC 6.1.1.11) |
| murF |
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Synechococcus sp. PCC 7002 Site: position = -92 score = 4.11588 sequence = GGTGACAAATATCACT Gene: SYNPCC7002_A2693: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (EC 6.3.2.10) |
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Synechocystis sp. PCC 6803 Site: position = -101 score = 5.00672 sequence = GGTGATCTAGATCACA Gene: slr1351: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (EC 6.3.2.10) |
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Cyanothece sp. ATCC 51142 Site: position = -83 score = 5.138 sequence = TGTGATCTTGATCACA Gene: cce_4424: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (EC 6.3.2.10) |
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Cyanothece sp. PCC 8801 Site: position = -74 score = 4.79187 sequence = AGTGATCTGGGTCACA Gene: PCC8801_2372: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (EC 6.3.2.10) |
Gene: Cyan7425_5148: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (EC 6.3.2.10) |
Gene: MAE_23180: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (EC 6.3.2.10) |
Gene: all0036: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (EC 6.3.2.10) |
Gene: Tery_0495: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (EC 6.3.2.10) |
Gene: Synpcc7942_1841: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (EC 6.3.2.10) |
Gene: PMT0401: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (EC 6.3.2.10) |
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Synechococcus sp. JA-3-3Ab Site: position = -32 score = 3.84522 sequence = ATTGACTAGAGTCATG Gene: CYA_0077: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (EC 6.3.2.10) |
Gene: SYNW1002: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (EC 6.3.2.10) |
Gene: gvip335: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (EC 6.3.2.10) |
Gene: null: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (EC 6.3.2.10) |
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (EC 6.3.2.10) |
| CRON 17. | |||||||||||||||
| SYNPCC7002_A1600 |
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Synechococcus sp. PCC 7002 Site: position = -141 score = 4.48296 sequence = CGTGATCAGAGTCACG Gene: SYNPCC7002_A1600: Conserved hypothetical protein |
*2
Synechocystis sp. PCC 6803 Site: position = -203 score = 4.85819 sequence = TGTGATCCAGATCACA Gene: slr0442: Conserved hypothetical protein Site: position = -162 score = 5.25891 sequence = TGTGATCTAGATCACA Gene: sll1268: Conserved hypothetical protein |
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Cyanothece sp. ATCC 51142 Site: position = -48 score = 4.37711 sequence = TCTGACTGAAATCACA Gene: cce_3647: Conserved hypothetical protein |
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Cyanothece sp. PCC 7425 Site: position = -102 score = 4.40902 sequence = TGTGATCTCAGTCATG Gene: Cyan7425_5163: Conserved hypothetical protein |
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Microcystis aeruginosa NIES-843 Site: position = -130 score = 4.8164 sequence = TGTGATTTTACTCACA Gene: MAE_53490: Conserved hypothetical protein |
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Conserved hypothetical protein |
| CRON 18. | |||||||||||||||
| sll1708 |
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Synechocystis sp. PCC 6803 Site: position = -77 score = 4.43972 sequence = CGTGATAGTAATCACC Gene: sll1708: Two component transcriptional regulator, LuxR family |
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Cyanothece sp. ATCC 51142 Site: position = -1 score = 3.78591 sequence = GGTGAATTTAAGCATG Gene: cce_2365: Two component transcriptional regulator, LuxR family |
Gene: PCC8801_2623: Two component transcriptional regulator, LuxR family |
Gene: Cyan7425_4561: Two component transcriptional regulator, LuxR family |
Gene: MAE_19750: Two component transcriptional regulator, LuxR family |
Gene: alr0913: Two component transcriptional regulator, LuxR family |
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Gene: tlr0724: Two component transcriptional regulator, LuxR family |
Two component transcriptional regulator, LuxR family |
| CRON 19. | |||||||||||||||
| slr1667 |
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Synechocystis sp. PCC 6803 Site: position = -259 score = 4.86255 sequence = TGTGATCTGGGTCACA Gene: slr1667: Hypothetical protein |
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Hypothetical protein |
| slr1668 |
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Gene: slr1668: Hypothetical protein |
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Hypothetical protein |
| CRON 20. | |||||||||||||||
| Cyan7425_1076 |
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Cyanothece sp. PCC 7425 Site: position = -107 score = 4.75764 sequence = AGTGATCAAAGTCATG Gene: Cyan7425_1076: Hypothetical protein |
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Hypothetical protein |
| SYNPCC7002_A2113 |
Gene: SYNPCC7002_A2113: Transglutaminase-like protein |
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Synechocystis sp. PCC 6803 Site: position = -188 score = 3.79727 sequence = AATGATAAACATCACT Gene: sll1608: Transglutaminase-like protein |
Gene: cce_2150: Transglutaminase-like protein |
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Cyanothece sp. PCC 8801 Site: position = -115 score = 4.1991 sequence = ATTGATATTAATCAAT Gene: PCC8801_3693: Transglutaminase-like protein |
Gene: Cyan7425_1077: Transglutaminase-like protein |
Gene: MAE_06550: Transglutaminase-like protein |
Gene: alr0103: Transglutaminase-like protein |
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Trichodesmium erythraeum IMS101 Site: position = -50 score = 4.69315 sequence = AATGATCTTAATCAAA Gene: Tery_0156: Transglutaminase-like protein |
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Gene: tlr0984: Transglutaminase-like protein |
Transglutaminase-like protein |
| CRON 21. | |||||||||||||||
| slr1503 |
Gene: SYNPCC7002_A0741: Predicted aldo/keto reductase |
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Synechocystis sp. PCC 6803 Site: position = -1 score = 3.79561 sequence = TATGACAATTAGCACC Gene: slr1503: Predicted aldo/keto reductase |
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Cyanothece sp. ATCC 51142 Site: position = -72 score = 4.06477 sequence = TGTGAGTTTTGTCACG Gene: cce_2512: Predicted aldo/keto reductase |
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Cyanothece sp. PCC 8801 Site: position = -35 score = 4.62734 sequence = TGTGAGCTAAATCACT Gene: PCC8801_0019: Predicted aldo/keto reductase |
Gene: Cyan7425_5143: Predicted aldo/keto reductase |
Gene: MAE_37350: Predicted aldo/keto reductase |
Gene: alr0300: Predicted aldo/keto reductase |
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Trichodesmium erythraeum IMS101 Site: position = -99 score = 3.87552 sequence = CATGGTTTTAATCATA Gene: Tery_2155: Predicted aldo/keto reductase |
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Gene: SYNW2031: Predicted aldo/keto reductase |
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Predicted aldo/keto reductase |
| CRON 22. | |||||||||||||||
| cce_0244 |
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Cyanothece sp. ATCC 51142 Site: position = -138 score = 4.61225 sequence = GGTGATTTAAGTCATC Gene: cce_0244: Conserved hypothetical protein |
Gene: PCC8801_3629: Conserved hypothetical protein |
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Gene: MAE_09560: Conserved hypothetical protein |
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Nostoc sp. PCC 7120 Site: position = -54 score = 4.21664 sequence = GTTGATTTAATTCATA Gene: all1210: Conserved hypothetical protein |
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Trichodesmium erythraeum IMS101 Site: position = -345 score = 3.95371 sequence = AATGATCAAAATTATA Gene: Tery_3463: Conserved hypothetical protein |
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Gene: glr1294: Conserved hypothetical protein |
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Conserved hypothetical protein |
| CRON 23. | |||||||||||||||
| gap2 |
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Synechococcus sp. PCC 7002 Site: position = -65 score = 3.69325 sequence = TATGATTGGGGTCATC Gene: SYNPCC7002_A0106: Glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.59) |
Gene: sll1342: Glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.59) |
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Cyanothece sp. PCC 8801 Site: position = -31 score = 3.98695 sequence = ATTGAGCTAAAGCATA Gene: PCC8801_2557: Glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.59) |
Gene: Cyan7425_0946: Glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.59) |
Gene: MAE_25030: Glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.59) |
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Nostoc sp. PCC 7120 Site: position = -1 score = 4.071 sequence = TGTGATTAGAGTCGCA Site: position = -56 score = 3.79379 sequence = TATGATTGGGGTCAAA Gene: all5062: Glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.59) |
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Trichodesmium erythraeum IMS101 Site: position = -410 score = 3.64617 sequence = TATGATAATTCTCAAG Gene: Tery_4030: Glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.59) |
Gene: Synpcc7942_1742: Glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.59) |
Gene: PMT0028: Glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.59) |
Gene: CYA_0325: Glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.59) |
Gene: SYNW0030: Glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.59) |
Gene: gvip056: Glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.59) |
Gene: null: Glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.59) |
Glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.59) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |