Regulog BkdR - Bacillales
| Regulator type: | Transcription factor |
| Regulator family: | Fis |
| Regulation mode: | activator |
| Biological process: | Branched-chain amino acid degradation |
| Effector: | |
| Phylum: | Firmicutes |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Bacillales
- By TF family - Fis
- By pathway - Branched-chain amino acid degradation
| Genome | Genes | Operons |
|---|---|---|
| Bacillus subtilis subsp. subtilis str. 168 | 8 | 2 |
| Bacillus amyloliquefaciens FZB42 | 8 | 2 |
| Bacillus pumilus SAFR-032 | 8 | 2 |
| Bacillus licheniformis DSM 13 | 8 | 2 |
| Anoxybacillus flavithermus WK1 | 8 | 2 |
| Geobacillus kaustophilus HTA426 | 8 | 2 |
| Bacillus cereus ATCC 14579 | 8 | 2 |
| Bacillus halodurans C-125 | 5 | 1 |
| Bacillus clausii KSM-K16 | 5 | 1 |
| Oceanobacillus iheyensis HTE831 | 7 | 2 |
| Paenibacillus sp. JDR-2 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| ptb |
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Bacillus subtilis subsp. subtilis str. 168 Site: position = -132 score = 5.60089 sequence = TGCAATAATTTGCA Gene: BSU24090: Phosphate butyryltransferase (EC 2.3.1.19) |
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Bacillus amyloliquefaciens FZB42 Site: position = -130 score = 5.82099 sequence = TGCAATAAATTGCA Gene: RBAM_022370: Phosphate butyryltransferase (EC 2.3.1.19) |
*
Bacillus pumilus SAFR-032 Site: position = -113 score = 4.77616 sequence = TGCAAAAAGTTGCG Site: position = -134 score = 5.38331 sequence = TGCAATAAAATGCA Gene: BPUM_2148: Phosphate butyryltransferase (EC 2.3.1.19) |
*
Bacillus licheniformis DSM 13 Site: position = -112 score = 4.56903 sequence = TGCAAAATCATGCA Site: position = -134 score = 5.82099 sequence = TGCAATAAATTGCA Gene: BLi02586: Phosphate butyryltransferase (EC 2.3.1.19) |
*
Anoxybacillus flavithermus WK1 Site: position = -117 score = 5.21384 sequence = TGCAAAAAGTTGCA Gene: Aflv_0958: Phosphate butyryltransferase (EC 2.3.1.19) |
*
Geobacillus kaustophilus HTA426 Site: position = -148 score = 5.16322 sequence = TGCAATAATTTGCG Gene: GK2382: Phosphate butyryltransferase (EC 2.3.1.19) |
*
Bacillus cereus ATCC 14579 Site: position = -184 score = 5.82099 sequence = TGCAATTTATTGCA Site: position = -203 score = 5.38331 sequence = TGCAATAAATTGCG Site: position = -217 score = 4.94168 sequence = TGCAAAAAATAGCA Gene: BC4163: Phosphate butyryltransferase (EC 2.3.1.19) |
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Phosphate butyryltransferase (EC 2.3.1.19) |
| bcd |
Gene: BSU24080: Leucine dehydrogenase (EC 1.4.1.9) |
Gene: RBAM_022360: Leucine dehydrogenase (EC 1.4.1.9) |
Gene: BPUM_2147: Leucine dehydrogenase (EC 1.4.1.9) |
Gene: BLi02585: Leucine dehydrogenase (EC 1.4.1.9) |
Gene: Aflv_0959: Leucine dehydrogenase (EC 1.4.1.9) |
Gene: GK2381: Leucine dehydrogenase (EC 1.4.1.9) |
Gene: BC4162: Leucine dehydrogenase (EC 1.4.1.9) |
*
Bacillus halodurans C-125 Site: position = -226 score = 5.60089 sequence = TGCAATAATTTGCA Gene: BH2765: Leucine dehydrogenase (EC 1.4.1.9) |
*
Bacillus clausii KSM-K16 Site: position = -150 score = 4.94312 sequence = TGCAAAAATATGCA Gene: ABC2453: Leucine dehydrogenase (EC 1.4.1.9) |
*
Oceanobacillus iheyensis HTE831 Site: position = -170 score = 5.60089 sequence = TGCAAAATATTGCA Gene: OB1869: Leucine dehydrogenase (EC 1.4.1.9) |
|
Leucine dehydrogenase (EC 1.4.1.9) |
| buk |
Gene: BSU24070: Butyrate kinase (EC 2.7.2.7) |
Gene: RBAM_022350: Butyrate kinase (EC 2.7.2.7) |
Gene: BPUM_2146: Butyrate kinase (EC 2.7.2.7) |
Gene: BLi02584: Butyrate kinase (EC 2.7.2.7) |
Gene: Aflv_0960: Butyrate kinase (EC 2.7.2.7) |
Gene: GK2380: Butyrate kinase (EC 2.7.2.7) |
Gene: BC4161: Butyrate kinase (EC 2.7.2.7) |
|
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Gene: OB1868: Butyrate kinase (EC 2.7.2.7) |
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Butyrate kinase (EC 2.7.2.7) |
| lpdV |
Gene: BSU24060: Branched-chain alpha-keto acid dehydrogenase E3 subunit (dihydrolipoamide dehydrogenase) |
Gene: RBAM_022340: Branched-chain alpha-keto acid dehydrogenase E3 subunit (dihydrolipoamide dehydrogenase) |
Gene: BPUM_2145: Branched-chain alpha-keto acid dehydrogenase E3 subunit (dihydrolipoamide dehydrogenase) |
Gene: BLi02583: Branched-chain alpha-keto acid dehydrogenase E3 subunit (dihydrolipoamide dehydrogenase) |
Gene: Aflv_0961: Branched-chain alpha-keto acid dehydrogenase E3 subunit (dihydrolipoamide dehydrogenase) |
Gene: GK2379: Branched-chain alpha-keto acid dehydrogenase E3 subunit (dihydrolipoamide dehydrogenase) |
Gene: BC4160: Branched-chain alpha-keto acid dehydrogenase E3 subunit (dihydrolipoamide dehydrogenase) |
Gene: BH2764: Branched-chain alpha-keto acid dehydrogenase E3 subunit (dihydrolipoamide dehydrogenase) |
Gene: ABC2452: Branched-chain alpha-keto acid dehydrogenase E3 subunit (dihydrolipoamide dehydrogenase) |
Gene: OB1867: Branched-chain alpha-keto acid dehydrogenase E3 subunit (dihydrolipoamide dehydrogenase) |
Gene: Pjdr2_2320: Branched-chain alpha-keto acid dehydrogenase E3 subunit (dihydrolipoamide dehydrogenase) |
Branched-chain alpha-keto acid dehydrogenase E3 subunit (dihydrolipoamide dehydrogenase) |
| bkdAA |
Gene: BSU24050: Branched-chain alpha-keto acid dehydrogenase E1 subunit (2-oxoisovalerate dehydrogenase alpha subunit) |
Gene: RBAM_022330: Branched-chain alpha-keto acid dehydrogenase E1 subunit (2-oxoisovalerate dehydrogenase alpha subunit) |
Gene: BPUM_2144: Branched-chain alpha-keto acid dehydrogenase E1 subunit (2-oxoisovalerate dehydrogenase alpha subunit) |
Gene: BLi02582: Branched-chain alpha-keto acid dehydrogenase E1 subunit (2-oxoisovalerate dehydrogenase alpha subunit) |
Gene: Aflv_0962: Branched-chain alpha-keto acid dehydrogenase E1 subunit (2-oxoisovalerate dehydrogenase alpha subunit) |
Gene: GK2378: Branched-chain alpha-keto acid dehydrogenase E1 subunit (2-oxoisovalerate dehydrogenase alpha subunit) |
Gene: BC4159: Branched-chain alpha-keto acid dehydrogenase E1 subunit (2-oxoisovalerate dehydrogenase alpha subunit) |
Gene: BH2763: Branched-chain alpha-keto acid dehydrogenase E1 subunit (2-oxoisovalerate dehydrogenase alpha subunit) |
Gene: ABC2451: Branched-chain alpha-keto acid dehydrogenase E1 subunit (2-oxoisovalerate dehydrogenase alpha subunit) |
Gene: OB1866: Branched-chain alpha-keto acid dehydrogenase E1 subunit (2-oxoisovalerate dehydrogenase alpha subunit) |
Gene: Pjdr2_2321: Branched-chain alpha-keto acid dehydrogenase E1 subunit (2-oxoisovalerate dehydrogenase alpha subunit) |
Branched-chain alpha-keto acid dehydrogenase E1 subunit (2-oxoisovalerate dehydrogenase alpha subunit) |
| bkdAB |
Gene: BSU24040: Branched-chain alpha-keto acid dehydrogenase E1 subunit (2-oxoisovalerate dehydrogenase beta subunit) |
Gene: RBAM_022320: Branched-chain alpha-keto acid dehydrogenase E1 subunit (2-oxoisovalerate dehydrogenase beta subunit) |
Gene: BPUM_2143: Branched-chain alpha-keto acid dehydrogenase E1 subunit (2-oxoisovalerate dehydrogenase beta subunit) |
Gene: BLi02581: Branched-chain alpha-keto acid dehydrogenase E1 subunit (2-oxoisovalerate dehydrogenase beta subunit) |
Gene: Aflv_0963: Branched-chain alpha-keto acid dehydrogenase E1 subunit (2-oxoisovalerate dehydrogenase beta subunit) |
Gene: GK2377: Branched-chain alpha-keto acid dehydrogenase E1 subunit (2-oxoisovalerate dehydrogenase beta subunit) |
Gene: BC4158: Branched-chain alpha-keto acid dehydrogenase E1 subunit (2-oxoisovalerate dehydrogenase beta subunit) |
Gene: BH2762: Branched-chain alpha-keto acid dehydrogenase E1 subunit (2-oxoisovalerate dehydrogenase beta subunit) |
Gene: ABC2450: Branched-chain alpha-keto acid dehydrogenase E1 subunit (2-oxoisovalerate dehydrogenase beta subunit) |
Gene: OB1865: Branched-chain alpha-keto acid dehydrogenase E1 subunit (2-oxoisovalerate dehydrogenase beta subunit) |
Gene: Pjdr2_2322: Branched-chain alpha-keto acid dehydrogenase E1 subunit (2-oxoisovalerate dehydrogenase beta subunit) |
Branched-chain alpha-keto acid dehydrogenase E1 subunit (2-oxoisovalerate dehydrogenase beta subunit) |
| bkdB |
Gene: BSU24030: Branched-chain alpha-keto acid dehydrogenase E2 subunit (lipoamide acyltransferase) |
Gene: RBAM_022310: Branched-chain alpha-keto acid dehydrogenase E2 subunit (lipoamide acyltransferase) |
Gene: BPUM_2142: Branched-chain alpha-keto acid dehydrogenase E2 subunit (lipoamide acyltransferase) |
Gene: BLi02580: Branched-chain alpha-keto acid dehydrogenase E2 subunit (lipoamide acyltransferase) |
Gene: Aflv_0964: Branched-chain alpha-keto acid dehydrogenase E2 subunit (lipoamide acyltransferase) |
Gene: GK2376: Branched-chain alpha-keto acid dehydrogenase E2 subunit (lipoamide acyltransferase) |
Gene: BC4157: Branched-chain alpha-keto acid dehydrogenase E2 subunit (lipoamide acyltransferase) |
Gene: BH2761: Branched-chain alpha-keto acid dehydrogenase E2 subunit (lipoamide acyltransferase) |
Gene: ABC2449: Branched-chain alpha-keto acid dehydrogenase E2 subunit (lipoamide acyltransferase) |
Gene: OB1864: Branched-chain alpha-keto acid dehydrogenase E2 subunit (lipoamide acyltransferase) |
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Branched-chain alpha-keto acid dehydrogenase E2 subunit (lipoamide acyltransferase) |
| CRON 2. | ||||||||||||
| bkdR |
*
Bacillus subtilis subsp. subtilis str. 168 Site: position = -61 score = 5.60089 sequence = TGCAAATTATTGCA Site: position = -31 score = 4.72158 sequence = TGCAAATTTTTTCA Gene: BSU24100: Transcriptional regulator of isoleucine and valine utilization, Fis family |
*
Bacillus amyloliquefaciens FZB42 Site: position = -31 score = 4.72158 sequence = TGCAAATTTTTTCA Site: position = -61 score = 5.60089 sequence = TGCAAATTATTGCA Gene: RBAM_022380: Transcriptional regulator of isoleucine and valine utilization, Fis family |
*
Bacillus pumilus SAFR-032 Site: position = -61 score = 5.60089 sequence = TGCAATTTTTTGCA Site: position = -31 score = 4.72158 sequence = TGCAAATTTTTTCA Gene: BPUM_2149: Transcriptional regulator of isoleucine and valine utilization, Fis family |
*
Bacillus licheniformis DSM 13 Site: position = -31 score = 4.72158 sequence = TGCAAAATTTTTCA Site: position = -61 score = 5.21384 sequence = TGCAAATTGTTGCA Gene: BLi02587: Transcriptional regulator of isoleucine and valine utilization, Fis family |
*
Anoxybacillus flavithermus WK1 Site: position = -23 score = 5.60089 sequence = TGCAAAAAATTGCA Gene: Aflv_0957: Transcriptional regulator of isoleucine and valine utilization, Fis family |
*
Geobacillus kaustophilus HTA426 Site: position = -38 score = 4.72158 sequence = TGCAAAAATTGGCA Gene: GK2383: Transcriptional regulator of isoleucine and valine utilization, Fis family |
*
Bacillus cereus ATCC 14579 Site: position = -41 score = 4.72158 sequence = TGAAAAAATTTGCA Gene: BC4165: Transcriptional regulator of isoleucine and valine utilization, Fis family |
Gene: BH2766: Transcriptional regulator of isoleucine and valine utilization, Fis family |
Gene: ABC2454: Transcriptional regulator of isoleucine and valine utilization, Fis family |
*
Oceanobacillus iheyensis HTE831 Site: position = -27 score = 5.16322 sequence = TGCAAAATAATGCA Gene: OB1870: Transcriptional regulator of isoleucine and valine utilization, Fis family |
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Transcriptional regulator of isoleucine and valine utilization, Fis family |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |