Regulog NrdR - Bacillales
| Regulator type: | Transcription factor |
| Regulator family: | NrdR |
| Regulation mode: | repressor |
| Biological process: | Deoxyribonucleotide biosynthesis |
| Effector: | Deoxyribonucleotides |
| Phylum: | Firmicutes |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Bacillales
- By trascription factor - NrdR
- By TF family - NrdR
- By effector - Deoxyribonucleotides
- By pathway - Deoxyribonucleotide biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Bacillus subtilis subsp. subtilis str. 168 | 4 | 1 |
| Bacillus amyloliquefaciens FZB42 | 4 | 1 |
| Bacillus pumilus SAFR-032 | 4 | 1 |
| Bacillus licheniformis DSM 13 | 4 | 1 |
| Anoxybacillus flavithermus WK1 | 4 | 1 |
| Geobacillus kaustophilus HTA426 | 3 | 2 |
| Bacillus cereus ATCC 14579 | 3 | 1 |
| Bacillus halodurans C-125 | 3 | 2 |
| Bacillus clausii KSM-K16 | 4 | 1 |
| Oceanobacillus iheyensis HTE831 | 3 | 1 |
| Paenibacillus sp. JDR-2 | 4 | 2 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| nrdA |
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Anoxybacillus flavithermus WK1 Site: position = -356 score = 5.09744 sequence = ATACAACATATTGTGA Site: position = -325 score = 4.7516 sequence = CAACTATATATTGAAA Gene: Aflv_0393: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
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Geobacillus kaustophilus HTA426 Site: position = -291 score = 5.31296 sequence = CTACTATATATTGTTT Site: position = -260 score = 4.16362 sequence = CAACTATATATCGTTG Gene: GK0911: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
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Bacillus halodurans C-125 Site: position = -395 score = 5.67688 sequence = ATACAATATATAGAGT Site: position = -363 score = 4.95893 sequence = TTACAATATCTAGTGT Gene: BH0501: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
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Oceanobacillus iheyensis HTE831 Site: position = -342 score = 4.74807 sequence = ATACAAGATATAGAAA Site: position = -310 score = 5.91877 sequence = ATACTATATATTGTGT Gene: OB3089: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
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Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
| Aflv_0392 |
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Gene: Aflv_0392: Transposase |
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Transposase |
| Aflv_0391 |
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Gene: Aflv_0391: Flavodoxin |
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Gene: OB3088: Flavodoxin |
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Flavodoxin |
| nrdB |
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Gene: Aflv_0390: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Gene: GK0912: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
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Gene: BH0502: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
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Gene: OB3087: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
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Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
| CRON 2. | ||||||||||||
| nrdI |
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Bacillus subtilis subsp. subtilis str. 168 Site: position = -92 score = 5.49746 sequence = AATCTATATATTGTGT Site: position = -59 score = 5.93251 sequence = ATACTATATATAGTGT Gene: BSU17370: Ribonucleotide reduction protein NrdI |
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Bacillus amyloliquefaciens FZB42 Site: position = -85 score = 4.82452 sequence = TCTCAATATGTTGTGT Site: position = -52 score = 5.93251 sequence = ATACTATATATAGTGT Gene: RBAM_017170: Ribonucleotide reduction protein NrdI |
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Bacillus pumilus SAFR-032 Site: position = -86 score = 4.55191 sequence = CATCTATATGTTGTGT Site: position = -54 score = 5.61304 sequence = ATACTATATATAGTGA Gene: BPUM_1628: Ribonucleotide reduction protein NrdI |
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Bacillus licheniformis DSM 13 Site: position = -97 score = 5.4166 sequence = GCACAATATATTGTGT Site: position = -65 score = 5.91877 sequence = ATACTATATATTGTGT Gene: BLi01965: Ribonucleotide reduction protein NrdI |
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Bacillus cereus ATCC 14579 Site: position = -65 score = 5.35741 sequence = ATACAATATATAGAGA Site: position = -44 score = 4.23244 sequence = GAACAACATATAGAGA Gene: BC1353: Ribonucleotide reduction protein NrdI |
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Bacillus clausii KSM-K16 Site: position = -100 score = 5.09344 sequence = AATCAATATATTGATT Site: position = -69 score = 4.27 sequence = CTACCATATGTGGTAT Gene: ABC3107: Ribonucleotide reduction protein NrdI |
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Paenibacillus sp. JDR-2 Site: position = -139 score = 4.55191 sequence = CAACTACATATTGAGT Gene: Pjdr2_4012: Ribonucleotide reduction protein NrdI |
Ribonucleotide reduction protein NrdI |
| nrdE |
Gene: BSU17380: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1) |
Gene: RBAM_017180: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1) |
Gene: BPUM_1629: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1) |
Gene: BLi01966: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1) |
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Gene: BC1354: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1) |
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Gene: ABC3108: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1) |
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Gene: Pjdr2_4011: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1) |
Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1) |
| nrdF |
Gene: BSU17390: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1) |
Gene: RBAM_017190: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1) |
Gene: BPUM_1630: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1) |
Gene: BLi01967: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1) |
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Gene: BC1355: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1) |
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Gene: ABC3109: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1) |
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Gene: Pjdr2_4010: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1) |
Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1) |
| ymaB |
Gene: BSU17400: Putative enzyme involved in deoxyribonucleotide synthesis |
Gene: RBAM_017200: Putative enzyme involved in deoxyribonucleotide synthesis |
Gene: BPUM_1631: Putative enzyme involved in deoxyribonucleotide synthesis |
Gene: BLi01968: Putative enzyme involved in deoxyribonucleotide synthesis |
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Gene: ABC3110: Putative enzyme involved in deoxyribonucleotide synthesis |
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Putative enzyme involved in deoxyribonucleotide synthesis |
| CRON 3. | ||||||||||||
| nrdZ |
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Geobacillus kaustophilus HTA426 Site: position = -135 score = 5.45091 sequence = TAACAATATATAGTAT Site: position = -102 score = 5.77038 sequence = ATACTATATATTGTTT Gene: GK2419: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) |
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Bacillus halodurans C-125 Site: position = -178 score = 5.52849 sequence = AATCAATATATAGTAT Site: position = -145 score = 5.70791 sequence = ATACTATATATTGAAT Gene: BH2810: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) |
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Paenibacillus sp. JDR-2 Site: position = -110 score = 3.84062 sequence = TACCGATATGTAGTAT Site: position = -78 score = 5.05634 sequence = ACACAATATATGGTGC Gene: Pjdr2_3990: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) |
Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |