Regulog TreR - Enterobacteriales

Properties
Regulator type:	Transcription factor
Regulator family:	LacI
Regulation mode:	repressor
Biological process:	Trehalose utilization
Effector:	Trehalose-6-phosphate
Phylum:	Proteobacteria/gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 8 sites [see more]

Member of regulog collections

By taxonomy - Enterobacteriales
By TF family - LacI
By effector - Trehalose-6-phosphate
By pathway - Trehalose utilization

Statistics of regulated genes
Genome	Genes	Operons
Escherichia coli str. K-12 substr. MG1655	2	1
Salmonella typhimurium LT2
Citrobacter koseri ATCC BAA-895	2	1
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	2	1
Enterobacter sp. 638	2	1
Erwinia amylovora ATCC 49946
Yersinia pestis KIM	2	1
Serratia proteamaculans 568	2	1
Erwinia carotovora subsp. atroseptica SCRI1043
Edwardsiella tarda EIB202
Proteus mirabilis HI4320	4	1
Photorhabdus luminescens subsp. laumondii TTO1	2	1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes													Function

CRON 1.
treB	* Escherichia coli str. K-12 substr. MG1655 Site: position = -82 score = 6.84117 sequence = TTTCGGGAACGTTCCCGTTT Gene: b4240: PTS system, trehalose-specific IIB component (EC 2.7.1.69) / PTS system, trehalose-specific IIC component (EC 2.7.1.69)	Salmonella typhimurium LT2	* Citrobacter koseri ATCC BAA-895 Site: position = -137 score = 7.12719 sequence = TTTCGGGAACGTTCCCATTT Gene: CKO_03571: PTS system, trehalose-specific IIB component (EC 2.7.1.69) / PTS system, trehalose-specific IIC component (EC 2.7.1.69)	* Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Site: position = -97 score = 7.12719 sequence = TTTCGGGAACGTTCCCATTT Gene: KPN_04652: PTS system, trehalose-specific IIB component (EC 2.7.1.69) / PTS system, trehalose-specific IIC component (EC 2.7.1.69)	* Enterobacter sp. 638 Site: position = -87 score = 7.12719 sequence = TTTCGGGAACGTTCCCATTT Gene: Ent638_0439: PTS system, trehalose-specific IIB component (EC 2.7.1.69) / PTS system, trehalose-specific IIC component (EC 2.7.1.69)	Erwinia amylovora ATCC 49946	* Yersinia pestis KIM Site: position = -321 score = 6.59395 sequence = AAATGGGAACGTTCCCATTC Gene: y0166: PTS system, trehalose-specific IIB component (EC 2.7.1.69) / PTS system, trehalose-specific IIC component (EC 2.7.1.69)	* Serratia proteamaculans 568 Site: position = -105 score = 6.54096 sequence = AACCGGGAACGTTCCCATTC Gene: Spro_0529: PTS system, trehalose-specific IIB component (EC 2.7.1.69) / PTS system, trehalose-specific IIC component (EC 2.7.1.69)	Erwinia carotovora subsp. atroseptica SCRI1043 Gene: ECA3013: PTS system, trehalose-specific IIB component (EC 2.7.1.69) / PTS system, trehalose-specific IIC component (EC 2.7.1.69)	Edwardsiella tarda EIB202	* Proteus mirabilis HI4320 Site: position = -78 score = 6.7976 sequence = TTATGGGAACGTTCCCATTG Gene: PMI0291: PTS system, trehalose-specific IIB component (EC 2.7.1.69) / PTS system, trehalose-specific IIC component (EC 2.7.1.69)	* Photorhabdus luminescens subsp. laumondii TTO1 Site: position = -107 score = 6.62563 sequence = TTTTGGGAACGTTCCCATGA Gene: plu3288: PTS system, trehalose-specific IIB component (EC 2.7.1.69) / PTS system, trehalose-specific IIC component (EC 2.7.1.69)	PTS system, trehalose-specific IIB component (EC 2.7.1.69) / PTS system, trehalose-specific IIC component (EC 2.7.1.69)
treP	Escherichia coli str. K-12 substr. MG1655	Salmonella typhimurium LT2	Citrobacter koseri ATCC BAA-895	Klebsiella pneumoniae subsp. pneumoniae MGH 78578	Enterobacter sp. 638	Erwinia amylovora ATCC 49946	Yersinia pestis KIM	Serratia proteamaculans 568	Erwinia carotovora subsp. atroseptica SCRI1043	Edwardsiella tarda EIB202	Proteus mirabilis HI4320 Gene: PMI0290: Trehalose-6-phosphate phosphorylase (EC 2.4.1.216)	Photorhabdus luminescens subsp. laumondii TTO1	Trehalose-6-phosphate phosphorylase (EC 2.4.1.216)
pgmB	Escherichia coli str. K-12 substr. MG1655	Salmonella typhimurium LT2	Citrobacter koseri ATCC BAA-895	Klebsiella pneumoniae subsp. pneumoniae MGH 78578	Enterobacter sp. 638	Erwinia amylovora ATCC 49946	Yersinia pestis KIM	Serratia proteamaculans 568	Erwinia carotovora subsp. atroseptica SCRI1043	Edwardsiella tarda EIB202	Proteus mirabilis HI4320 Gene: PMI0289: beta-phosphoglucomutase	Photorhabdus luminescens subsp. laumondii TTO1	beta-phosphoglucomutase
treY	Escherichia coli str. K-12 substr. MG1655	Salmonella typhimurium LT2	Citrobacter koseri ATCC BAA-895	Klebsiella pneumoniae subsp. pneumoniae MGH 78578	Enterobacter sp. 638	Erwinia amylovora ATCC 49946	Yersinia pestis KIM	Serratia proteamaculans 568	Erwinia carotovora subsp. atroseptica SCRI1043	Edwardsiella tarda EIB202	Proteus mirabilis HI4320 Gene: PMI0288: predicted trehalose-specific porin	Photorhabdus luminescens subsp. laumondii TTO1	predicted trehalose-specific porin
treC	Escherichia coli str. K-12 substr. MG1655 Gene: b4239: Trehalose-6-phosphate hydrolase (EC 3.2.1.93)	Salmonella typhimurium LT2 Gene: STM4453: Trehalose-6-phosphate hydrolase (EC 3.2.1.93)	Citrobacter koseri ATCC BAA-895 Gene: CKO_03572: Trehalose-6-phosphate hydrolase (EC 3.2.1.93)	Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Gene: KPN_04651: Trehalose-6-phosphate hydrolase (EC 3.2.1.93)	Enterobacter sp. 638 Gene: Ent638_0438: Trehalose-6-phosphate hydrolase (EC 3.2.1.93)	Erwinia amylovora ATCC 49946	Yersinia pestis KIM Gene: y0167: Trehalose-6-phosphate hydrolase (EC 3.2.1.93)	Serratia proteamaculans 568 Gene: Spro_0528: Trehalose-6-phosphate hydrolase (EC 3.2.1.93)	Erwinia carotovora subsp. atroseptica SCRI1043 Gene: ECA3014: Trehalose-6-phosphate hydrolase (EC 3.2.1.93)	Edwardsiella tarda EIB202	Proteus mirabilis HI4320	Photorhabdus luminescens subsp. laumondii TTO1 Gene: plu3287: Trehalose-6-phosphate hydrolase (EC 3.2.1.93)	Trehalose-6-phosphate hydrolase (EC 3.2.1.93)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog TreR - Enterobacteriales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --