Regulog NrdR - Ralstonia
| Regulator type: | Transcription factor |
| Regulator family: | NrdR |
| Regulation mode: | repressor |
| Biological process: | Deoxyribonucleotide biosynthesis |
| Effector: | Deoxyribonucleotides |
| Phylum: | Proteobacteria/beta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Ralstonia
- By trascription factor - NrdR
- By TF family - NrdR
- By effector - Deoxyribonucleotides
- By pathway - Deoxyribonucleotide biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Ralstonia solanacearum GMI1000 | 5 | 2 |
| Ralstonia pickettii 12J | 8 | 3 |
| Ralstonia metallidurans CH34 | 5 | 2 |
| Ralstonia eutropha JMP134 | 2 | 1 |
| Ralstonia eutropha H16 | 4 | 2 |
| Cupriavidus taiwanensis | 1 | 1 |
| Genes | Function | ||||||
|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||
| nrdA |
*
Ralstonia solanacearum GMI1000 Site: position = -220 score = 3.70939 sequence = CCACTATACTTAGTGC Site: position = -189 score = 5.30011 sequence = ACACTAGATATAGTGG Gene: RSc2805: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
*
Ralstonia pickettii 12J Site: position = -232 score = 3.61554 sequence = CCACTATACTTAGCGT Site: position = -201 score = 5.19541 sequence = ACACTAGATGTAGTGG Gene: Rpic_3047: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
*
Ralstonia metallidurans CH34 Site: position = -251 score = 5.04291 sequence = CCACTACATCTAGTGG Gene: Rmet_3088: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
*
Ralstonia eutropha JMP134 Site: position = -239 score = 4.89138 sequence = CCACTATATCTAGTAG Gene: Reut_A2941: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
*
Ralstonia eutropha H16 Site: position = -240 score = 5.04388 sequence = ACACTATATCTAGTAG Gene: H16_A3235: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
*
Cupriavidus taiwanensis Site: position = -251 score = 4.78668 sequence = CCACTACATCTAGTAG Gene: RALTA_A2686: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
| nrdB |
Gene: RSc2804: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Gene: Rpic_3046: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Gene: Rmet_3087: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Gene: Reut_A2940: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Gene: H16_A3234: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Gene: RALTA_A2685: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
| CRON 2. | |||||||
| nrdD |
*
Ralstonia solanacearum GMI1000 Site: position = -50 score = 4.58539 sequence = CCACAACATCTAGTGC Site: position = -19 score = 3.91923 sequence = CCACTATATGGAGTAC Gene: RSp0963: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
*2
Ralstonia pickettii 12J Site: position = -53 score = 4.69009 sequence = CCACAATATCTAGTGC Site: position = -21 score = 5.08465 sequence = CCACTATATGTAGGGG Gene: Rpic_4657: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) Site: position = -50 score = 4.74827 sequence = CCACAATATGTAGTGC Site: position = -19 score = 3.91923 sequence = CCACTATATGGAGTAC Gene: Rpic_2106: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
*
Ralstonia metallidurans CH34 Site: position = -67 score = 3.77867 sequence = ACACCACCTATGGTAT Site: position = -36 score = 3.91051 sequence = ACCCCATATTTTGTGC Gene: Rmet_5139: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
|
*
Ralstonia eutropha H16 Site: position = -67 score = 5.25456 sequence = AAACTACATATAGTGT Site: position = -36 score = 3.82734 sequence = TCCCCGCATCTAGTGT Gene: PHG240: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
|
Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
| RSp0964 |
Gene: RS02295: hypothetical protein |
2
Ralstonia pickettii 12J Gene: Rpic_4658: hypothetical protein Gene: Rpic_2107: hypothetical protein |
Gene: Rmet_5138: hypothetical protein |
|
Gene: PHG239: hypothetical protein |
|
hypothetical protein |
| nrdG |
Gene: RSp0965: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
2
Ralstonia pickettii 12J Gene: Rpic_4659: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) Gene: Rpic_2108: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
Gene: Rmet_5137: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
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Gene: PHG238: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
|
Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |