Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog NrdR - Ralstonia

Properties
Regulator type: Transcription factor
Regulator family: NrdR
Regulation mode: repressor
Biological process: Deoxyribonucleotide biosynthesis
Effector: Deoxyribonucleotides
Phylum: Proteobacteria/beta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 18 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Ralstonia solanacearum GMI1000 5 2
Ralstonia pickettii 12J 8 3
Ralstonia metallidurans CH34 5 2
Ralstonia eutropha JMP134 2 1
Ralstonia eutropha H16 4 2
Cupriavidus taiwanensis 1 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
nrdA
*
Ralstonia solanacearum GMI1000

Site:
position = -220
score = 3.70939
sequence = CCACTATACTTAGTGC

Site:
position = -189
score = 5.30011
sequence = ACACTAGATATAGTGG

Gene: RSc2805: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Ralstonia pickettii 12J

Site:
position = -232
score = 3.61554
sequence = CCACTATACTTAGCGT

Site:
position = -201
score = 5.19541
sequence = ACACTAGATGTAGTGG

Gene: Rpic_3047: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Ralstonia metallidurans CH34

Site:
position = -251
score = 5.04291
sequence = CCACTACATCTAGTGG

Gene: Rmet_3088: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Ralstonia eutropha JMP134

Site:
position = -239
score = 4.89138
sequence = CCACTATATCTAGTAG

Gene: Reut_A2941: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Ralstonia eutropha H16

Site:
position = -240
score = 5.04388
sequence = ACACTATATCTAGTAG

Gene: H16_A3235: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Cupriavidus taiwanensis

Site:
position = -251
score = 4.78668
sequence = CCACTACATCTAGTAG

Gene: RALTA_A2686: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
nrdB
 
Ralstonia solanacearum GMI1000

Gene: RSc2804: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Ralstonia pickettii 12J

Gene: Rpic_3046: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Ralstonia metallidurans CH34

Gene: Rmet_3087: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Ralstonia eutropha JMP134

Gene: Reut_A2940: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Ralstonia eutropha H16

Gene: H16_A3234: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Cupriavidus taiwanensis

Gene: RALTA_A2685: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
CRON 2.
nrdD
*
Ralstonia solanacearum GMI1000

Site:
position = -50
score = 4.58539
sequence = CCACAACATCTAGTGC

Site:
position = -19
score = 3.91923
sequence = CCACTATATGGAGTAC

Gene: RSp0963: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
*2
Ralstonia pickettii 12J

Site:
position = -53
score = 4.69009
sequence = CCACAATATCTAGTGC

Site:
position = -21
score = 5.08465
sequence = CCACTATATGTAGGGG

Gene: Rpic_4657: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)

Site:
position = -50
score = 4.74827
sequence = CCACAATATGTAGTGC

Site:
position = -19
score = 3.91923
sequence = CCACTATATGGAGTAC

Gene: Rpic_2106: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
*
Ralstonia metallidurans CH34

Site:
position = -67
score = 3.77867
sequence = ACACCACCTATGGTAT

Site:
position = -36
score = 3.91051
sequence = ACCCCATATTTTGTGC

Gene: Rmet_5139: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
 
Ralstonia eutropha JMP134
*
Ralstonia eutropha H16

Site:
position = -67
score = 5.25456
sequence = AAACTACATATAGTGT

Site:
position = -36
score = 3.82734
sequence = TCCCCGCATCTAGTGT

Gene: PHG240: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
 
Cupriavidus taiwanensis
Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
RSp0964
 
Ralstonia solanacearum GMI1000

Gene: RS02295: hypothetical protein
 2
Ralstonia pickettii 12J

Gene: Rpic_4658: hypothetical protein

Gene: Rpic_2107: hypothetical protein
 
Ralstonia metallidurans CH34

Gene: Rmet_5138: hypothetical protein
 
Ralstonia eutropha JMP134
 
Ralstonia eutropha H16

Gene: PHG239: hypothetical protein
 
Cupriavidus taiwanensis
hypothetical protein
nrdG
 
Ralstonia solanacearum GMI1000

Gene: RSp0965: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
 2
Ralstonia pickettii 12J

Gene: Rpic_4659: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)

Gene: Rpic_2108: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
 
Ralstonia metallidurans CH34

Gene: Rmet_5137: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
 
Ralstonia eutropha JMP134
 
Ralstonia eutropha H16

Gene: PHG238: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
 
Cupriavidus taiwanensis
Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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