Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of TyrR regulog to Shewanella baltica OS185

Reference regulog properties
Source regulog: TyrR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: TyrR
Regulation mode: activator
Biological process: Amino acid utilization
Effector: Tyrosine; Phenylalanine
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Shewanella baltica OS185
Orthologous TF(s) Shew185_1481
Regulated genes 25
Built upon 312 sites [see more]
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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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© 2009-2020 RegPrecise
Predicted regulatory interactions in Shewanella baltica OS185
Locus tag Position Score Sequence
Position: -159
Score: 4.6
Sequence: GTGTAAATAAAAAATGGCAT
Locus tag: Shew185_0299
Shew185_0299 -159 4.6 GTGTAAATAAAAAATGGCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: tdo
Ortholog function: tryptophan 2,3-dioxygenase
Shewanella oneidensis MR-1 SO_4414 -175 4.5 GTGTAAATAAAAAGTGGCAT
Shewanella putrefaciens CN-32 Sputcn32_0406 -179 4.5 GTGTAAATAAAAAGTGGCAT
Shewanella sp W3-18-1 Sputw3181_0260 -179 4.5 GTGTAAATAAAAAGTGGCAT
Shewanella sp ANA-3 Shewana3_0294 -179 4.5 GTGTAAATAAAAAGTGGCAT
Shewanella sp MR-4 Shewmr4_0294 -179 4.5 GTGTAAATAAAAAGTGGCAT
Shewanella sp MR-7 Shewmr7_3725 -180 4.5 GTGTAAATAAAAAGTGGCAT
Shewanella baltica OS155 Sbal_0303 -159 4.6 GTGTAAATAAAAAATGGCAT
Shewanella denitrificans OS217 Sden_3451 -122 4.3 TCGGAAGTTAAACTTTACAT
Position: -265
Score: 3.4
Sequence: ATGTTTAATATGATTTATAT
Locus tag: Shew185_1307
Shew185_1307 -265 3.4 ATGTTTAATATGATTTATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: aceB
Ortholog function: Malate synthase (EC 2.3.3.9)
Shewanella oneidensis MR-1 SO_1483 -372 3.7 GTGTAATCATTGTTTTTCGA
Shewanella putrefaciens CN-32 Sputcn32_1238 -304 4.7 GTGTAATTATAAATTTACGT
Shewanella sp W3-18-1 Sputw3181_2866 -303 4.5 GTGTAATTATAAATTTACTT
Shewanella sp ANA-3 Shewana3_2943 -372 4.3 CTGTATATTTAAATTTTCAA
Shewanella sp MR-4 Shewmr4_2767 -372 4.3 CTGTATAGTTAAATTTTCAA
Shewanella sp MR-7 Shewmr7_2845 -372 3.8 CTGTACATTTAAATTTTCAG
Shewanella baltica OS155 Sbal_1316 -380 3.6 CTGTATTAATATATTTACTG
Shewanella denitrificans OS217 Sden_1245 -324 4 TTGTAAGTTATTATTTACTG
Shewanella frigidimarina NCIMB 400 Sfri_1101 -458 4.4 tgGTAAAGaaAtATTTACAg
Shewanella amazonensis SB2B Sama_2381 -450 4.1 TTGTAAATTAAATATTAAAT
-364 3.7 GTGTATTAAAAATCTTACAG
Shewanella loihica PV-4 Shew_1275 -393 3.4 CTGTATCGACAAAATTACTA
Shewanella pealeana ATCC 700345 Spea_1290 -415 3.9 GTGGCAATAATTGTTAACGA
Shewanella halifaxensis HAW-EB4 Shal_1352 -458 4.1 aTGTAAAagTAtATTgACgC
Shewanella piezotolerans WP3 swp_1433 -412 4.2 CTGTATTTATAATATTACAC
Shewanella sediminis HAW-EB3 Ssed_1414 -371 4.2 CTGTAAGTTTATTTTTACGC
Shewanella woodyi ATCC 51908 Swoo_1528 -401 3.9 GTGTATCATTAAGTTTACTT
-341 3.6 TTGGTAAATTTGTCTGACAA
Position: -122
Score: 4.4
Sequence: TTGTAATATTTGCTTTACGT
Locus tag: Shew185_1479
Shew185_1479 -122 4.4 TTGTAATATTTGCTTTACGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: phhA
Ortholog function: Phenylalanine-4-hydroxylase (EC 1.14.16.1)
Shewanella oneidensis MR-1 SO_1666 -122 4.4 TTGTAATATTTGCTTTACGT
Shewanella putrefaciens CN-32 Sputcn32_1386 -122 4.4 TTGTAATATTTGCTTTACGT
Shewanella sp W3-18-1 Sputw3181_2715 -122 4.4 TTGTAATATTTGCTTTACGT
Shewanella sp ANA-3 Shewana3_2781 -122 4.4 TTGTAATATTTGCTTTACGT
Shewanella sp MR-4 Shewmr4_2607 -122 4.4 TTGTAATATTTACTTTACGT
Shewanella sp MR-7 Shewmr7_2674 -122 4.4 TTGTAATATTTGCTTTACGT
Shewanella baltica OS155 Sbal_1484 -122 4.4 TTGTAATATTTGCTTTACGT
Shewanella denitrificans OS217 Sden_2595 -127 4.4 TTGTATGCTTAAGTTTACAA
Shewanella frigidimarina NCIMB 400 Sfri_1328 -121 4.1 TTGTATTTATTTGTTTACGA
Shewanella amazonensis SB2B Sama_2222 -123 4.3 TTGTAATAAAAGCTTTACGA
Shewanella loihica PV-4 Shew_1435 -87 4.7 ATGTAAATTTGAGGTTACAT
Shewanella pealeana ATCC 700345 Spea_1448 -239 4.3 GTGTCAATTTCTATATACGC
-173 4.8 GTGTAACATTAGCATTACAC
Shewanella halifaxensis HAW-EB4 Shal_1531 -133 4.3 GTGTAACAACTTCGTTACAC
Shewanella piezotolerans WP3 swp_1650 -188 4.6 CTGTAAATTATGGCTTACAA
-123 4.5 ATGTAAACTTATGGTTACGC
Shewanella sediminis HAW-EB3 Ssed_2930 -188 3.7 TCGTCAATAAATGGTGACGA
-122 4.2 TTGTAAGCAAATTGTTACAC
Shewanella woodyi ATCC 51908 Swoo_1715 -186 3.8 TTGGCAATAATTCAATACGA
-121 4.6 GTGTAACTTTTTGGTTACAA
Position: -196
Score: 4.7
Sequence: CTGTAAACTAGGCTTGCCAC
Locus tag: Shew185_1481
Shew185_1481 -196 4.7 CTGTAAACTAGGCTTGCCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: tyrR
Ortholog function: Transcriptional regulator of aromatic amino acid biosynthesis
Shewanella oneidensis MR-1 SO_1669 -190 4.7 CTGTAAACTAGGCTTGCCAC
Shewanella putrefaciens CN-32 Sputcn32_1388 -188 4.8 CTGTAAACTTGACTTGCCAC
Shewanella sp W3-18-1 Sputw3181_2713 -188 4.8 CTGTAAACTTGACTTGCCAC
Shewanella sp ANA-3 Shewana3_2779 -205 4.7 CTGTAAACTAGACTTGCCAC
Shewanella sp MR-4 Shewmr4_2605 -205 4.7 CTGTAAACTAGACTTGCCAC
Shewanella sp MR-7 Shewmr7_2672 -205 4.7 CTGTAAACTAGACTTGCCAC
Shewanella baltica OS155 Sbal_1486 -196 4.7 CTGTAAACTAGGCTTGCCAC
Shewanella denitrificans OS217 Sden_2593 -155 4.6 CTGTAAACAAGACTTGCCAC
Shewanella frigidimarina NCIMB 400 Sfri_1330 -92 4.7 CTGTAAACTTCACTTGCCAC
Shewanella amazonensis SB2B Sama_2220 -134 4.6 CTGTAAACAAGACTTGCCAC
Shewanella loihica PV-4 Shew_1437 -162 4.7 GTGTAAACAACTCTTGCCAC
Shewanella pealeana ATCC 700345 Spea_1450 -158 4.6 CTGTAAACAAGTCTTGCCAC
Shewanella halifaxensis HAW-EB4 Shal_1533 -159 4.1 CTGTAAACAAGCCTTGCCAC
Shewanella piezotolerans WP3 swp_1652 -309 4.6 cTGTAAAcaagtCTTgcCAC
Shewanella sediminis HAW-EB3 Ssed_2928 -151 4.6 CTGTAAACAAGACTTGCCAC
Shewanella woodyi ATCC 51908 Swoo_1717 -161 4.6 CTGTAAACAAGACTTGCCAC
Position: -274
Score: 4
Sequence: ACGTAATGATTAGTTTACGA
Locus tag: Shew185_1482
Shew185_1482 -274 4 ACGTAATGATTAGTTTACGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hmgC
Ortholog function: Fumarylacetoacetase (EC 3.7.1.2)
Shewanella oneidensis MR-1 SO_1670 -323 3.8 ATGTAACAGTATCGTTCCAC
-239 4.3 ACGTAATGATTAGTTTACAG
Shewanella putrefaciens CN-32 Sputcn32_1389 -352 3.9 ATGTAACCGTATCGTTCCAC
-268 4 ACGTAATGATTAGTTTACGA
Shewanella sp W3-18-1 Sputw3181_2712 -352 3.9 ATGTAACCGTATCGTTCCAC
-268 4 ACGTAATGATTAGTTTACGA
Shewanella sp ANA-3 Shewana3_2778 -320 3.8 ATGTAACAGTATCGTTCCAC
-236 4.4 ACGTAATGATTAGTTTACAA
Shewanella sp MR-4 Shewmr4_2604 -319 3.8 ATGTAACAGTATCGTTCCAC
-235 4.4 ACGTAATGATTAGTTTACAA
Shewanella sp MR-7 Shewmr7_2671 -319 3.8 ATGTAACAGTATCGTTCCAC
-235 4.4 ACGTAATGATTAGTTTACAA
Shewanella baltica OS155 Sbal_1487 -358 3.8 ATGTAACAGTATCGTTCCAC
-274 4 ACGTAATGATTAGTTTACGA
Shewanella denitrificans OS217 Sden_2592 -228 4.1 ATGTAACGAATTAGTGCCAT
-146 4.1 TTGTACTGAAAAGTTTACAG
Shewanella frigidimarina NCIMB 400 Sfri_1331 -155 4.9 TTGTAACGAATAATTTACAA
Shewanella amazonensis SB2B Sama_2219 -234 4.3 GTGTAAAAAGAATTTGCCAG
-150 4.4 CTGTATTTAAAAGTTTACAA
Shewanella loihica PV-4 Shew_1438 -169 4.5 CTGTCATGAATTGTTTACAA
Shewanella pealeana ATCC 700345 Spea_1451 -197 4.8 GTGTATCTATAAGTTTACAC
Shewanella halifaxensis HAW-EB4 Shal_1534 -183 4.7 CTGTAAGTATAAGTTTACAA
Shewanella piezotolerans WP3 swp_1653 -179 4.8 CTGTAATTATATGTTTACAA
Shewanella sediminis HAW-EB3 Ssed_2927 -238 4 ATGTAAAAGCTTGTTGCCAC
-155 4 GTGTAACTGTTTATTTACGT
Shewanella woodyi ATCC 51908 Swoo_1718 -256 4.2 ATGTAACAAGAGATTGCCAC
-172 4.8 CTGTAATTATTTATTTACAA
Position: -162
Score: 4.3
Sequence: CTGTAAATCCTTACTGACAT
Locus tag: Shew185_1489
Shew185_1489 -162 4.3 CTGTAAATCCTTACTGACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ivdA
Ortholog function: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
Shewanella oneidensis MR-1 SO_1677 -159 4.4 CTGTAAATCCTGACTGACAA
Shewanella putrefaciens CN-32 Sputcn32_1397 -167 4.3 CTGTAAATCCTTACTGACAA
Shewanella sp W3-18-1 Sputw3181_2704 -167 4.3 CTGTAAATCCTTACTGACAA
Shewanella sp ANA-3 Shewana3_2771 -159 4.4 CTGTAAATCCTGACTGACAA
Shewanella sp MR-4 Shewmr4_2597 -159 4.4 CTGTAAATCCTGACTGACAA
Shewanella sp MR-7 Shewmr7_2664 -159 4.4 CTGTAAATCCTGACTGACAA
Shewanella baltica OS155 Sbal_1495 -162 4.3 CTGTAAATCCTTACTGACAT
Shewanella denitrificans OS217 Sden_1943 -159 4.4 GTGTAAATCTTCAGTGACAA
Shewanella frigidimarina NCIMB 400 Sfri_1338 -140 4.1 CTGTAAATCTTCACTGACAA
Shewanella amazonensis SB2B Sama_1375 -195 3.8 GTGTCAATCTCAGTTCCCGC
-173 4.6 CTGTAAATCCAGAGTGACAA
Shewanella loihica PV-4 Shew_1667 -168 4.4 CTGTAAATTCAGCCTGACAA
Shewanella pealeana ATCC 700345 Spea_2783 -231 4.5 GTGTAAATTCTATGTGACAA
Shewanella halifaxensis HAW-EB4 Shal_2878 -231 4.4 GTGTAAATCCTTTGTGACAT
Shewanella piezotolerans WP3 swp_3387 -75 3.8 TTTTAAGTTGATGTTTACAC
Shewanella sediminis HAW-EB3 Ssed_1473 -185 4.5 CTGTAAATCCTGAGTGACAT
Shewanella woodyi ATCC 51908 Swoo_3202 -173 4.7 CTGTAAATCTTGAGTGACAT
Position: -223
Score: 4.1
Sequence: ATGTAACAAGTTAATTACAC
Locus tag: Shew185_1611
Shew185_1611 -223 4.1 ATGTAACAAGTTAATTACAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: mdeA
Ortholog function: Methionine gamma-lyase (EC 4.4.1.11)
Shewanella oneidensis MR-1 SO_1812 -197 3.9 ATGTAACAACTTAGTTACAG
Shewanella putrefaciens CN-32 Sputcn32_1507 -210 4.1 ATGTAACAAGTTAATTACAC
Shewanella sp W3-18-1 Sputw3181_2594 -210 4.1 ATGTAACAAGTTAATTACAC
Shewanella sp ANA-3 Shewana3_2643 -208 3.9 ATGTAACAACTTAGTTACAG
Shewanella sp MR-4 Shewmr4_2477 -208 3.9 ATGTAACAACTTAGTTACAG
Shewanella sp MR-7 Shewmr7_2545 -208 3.9 ATGTAACAACTTAGTTACAG
Shewanella baltica OS155 Sbal_1622 -199 4.1 ATGTAACAAGTTAATTACAC
Shewanella denitrificans OS217 Sden_2521 -152 4.3 ATGTAACATAGTTTTTACAT
Shewanella frigidimarina NCIMB 400 Sfri_1369 -148 4.7 TTGTAAAATTGTTTTTACAT
Shewanella pealeana ATCC 700345 Spea_2664 -215 4 ACGTAACAATCACTTTACAA
Shewanella halifaxensis HAW-EB4 Shal_2751 -214 4.4 TTGTAACATTCAGTTTACAA
Shewanella piezotolerans WP3 swp_3243 -242 4.1 ACGTAACATATATTTTACAA
Position: -160
Score: 4.9
Sequence: TTGTAAAGCAATATATACAT
Locus tag: Shew185_2149
Shew185_2149 -160 4.9 TTGTAAAGCAATATATACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: bkdA1
Ortholog function: Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4)
Shewanella oneidensis MR-1 SO_2339 -160 4.9 TTGTAAAGCAATATATACAT
Shewanella putrefaciens CN-32 Sputcn32_1885 -160 4.9 TTGTAAAGCAATATATACAT
Shewanella sp W3-18-1 Sputw3181_2123 -160 4.9 TTGTAAAGCAATATATACAT
Shewanella sp ANA-3 Shewana3_2131 -160 4.8 TTGTAAAGCATTATATACAT
Shewanella sp MR-4 Shewmr4_2028 -160 4.8 TTGTAAAGCATTATATACAT
Shewanella sp MR-7 Shewmr7_1947 -160 4.8 TTGTAAAGCATTATATACAT
Shewanella baltica OS155 Sbal_4508 -160 4.9 TTGTAAAGCAATATATACAT
Shewanella denitrificans OS217 Sden_1786 -153 4.5 GCGTAAAGCAAATTATACAA
Shewanella frigidimarina NCIMB 400 Sfri_1935 -156 4.5 TCGTAAAGCAATATATACAT
Shewanella amazonensis SB2B Sama_1709 -150 4.3 CTGTAAAGCAATTAATACAT
Shewanella loihica PV-4 Shew_1925 -175 4.7 TTGTAAAGCTAGCGATACAT
Shewanella pealeana ATCC 700345 Spea_2246 -161 4.8 ATGTAAACCAATATATACAT
Shewanella halifaxensis HAW-EB4 Shal_2234 -161 4.8 ATGTAAACCAATATATACAT
Shewanella piezotolerans WP3 swp_2606 -162 4.8 ATGTAAACCAATATATACAT
Shewanella sediminis HAW-EB3 Ssed_2329 -172 4.4 TTGTAAAGCTAAAGATACGC
Shewanella woodyi ATCC 51908 Swoo_2278 -171 4 ATGTAAAGCTAAACATACGG
Position: -154
Score: 4.5
Sequence: GCGTAAGTTTAGCTTTACAG
Locus tag: Shew185_2267
Shew185_2267 -154 4.5 GCGTAAGTTTAGCTTTACAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: emrD
Ortholog function: multidrug resistance protein D
Shewanella oneidensis MR-1 SO_2389 -152 4.5 ATGTAAGCTTAATTTTACAG
Shewanella putrefaciens CN-32 Sputcn32_2030 -257 3.7 ATATCAAGTATTTTATCCAC
-114 4.6 GCGTAAGTTTAACTTTACAA
Shewanella sp W3-18-1 Sputw3181_1983 -257 3.7 ATATCAAGTATTTTATCCAC
-114 4.6 GCGTAAGTTTAACTTTACAA
Shewanella sp ANA-3 Shewana3_1989 -152 4.6 GTGTAAGCTTAGTTTGACAA
Shewanella sp MR-4 Shewmr4_1936 -218 4 GTGGCAATTAATTTTACCAG
-152 4.6 GTGTAAGCTAAATTTTACAG
Shewanella sp MR-7 Shewmr7_2040 -218 4 GTGGCAATTAATTTTACCAG
-152 4.6 GTGTAAGCTAAATTTTACAG
Shewanella baltica OS155 Sbal_2085 -154 4.4 ACGTAAGTTTAGCTTTACAG
Shewanella sediminis HAW-EB3 Ssed_2287 -182 4 CTGTAACGCCATCAATACAA
-161 4 GTGTAAGCTTGCGTTTACAG
Shewanella woodyi ATCC 51908 Swoo_2329 -160 4.1 TCGTAAGTATAGATTTACGC
Position: -299
Score: 4
Sequence: TTGGCAAAAAAGCCTGCCAA
Position: -102
Score: 4.5
Sequence: TTGTAATCTTAACTTGACGC
Position: -81
Score: 3.7
Sequence: GTGTAGCGTGAAGTTGCCAT
Locus tag: Shew185_2281
Shew185_2281 -299 4 TTGGCAAAAAAGCCTGCCAA
-102 4.5 TTGTAATCTTAACTTGACGC
-81 3.7 GTGTAGCGTGAAGTTGCCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: aroA
Ortholog function: 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19)
Shewanella oneidensis MR-1 SO_2404 -101 3.8 TAGTAACGTAAACTTGACGT
-80 3.6 ATGTAGTGTGAAGTTGCCAT
Shewanella putrefaciens CN-32 Sputcn32_2044 -299 4 TTGGCAAAAAAGCCTGCCAA
-102 4.5 TTGTAATCTTAACTTGACGC
Shewanella sp W3-18-1 Sputw3181_1969 -298 4 TTGGCAAAAAAGCCTGCCAA
-102 4.5 TTGTAATCTTAACTTGACGC
Shewanella sp ANA-3 Shewana3_1975 -300 3.9 CTGGCAAAAAAGCCTGCCAA
-102 4.5 TTGTAATCTTAACTTGACGC
Shewanella sp MR-4 Shewmr4_1922 -300 3.9 CTGGCAAAAAAGCCTGCCAA
-102 4.5 TTGTAATCTTAACTTGACGC
Shewanella sp MR-7 Shewmr7_2056 -298 3.9 CTGGCAAAAAAGCCTGCCAA
-101 4.5 TTGTAATCTTAACTTGACGC
Shewanella baltica OS155 Sbal_2068 -299 4 TTGGCAAAAAAGCCTGCCAA
-102 4.5 TTGTAATCTTAACTTGACGC
-81 3.7 GTGTAGCGTGAAGTTGCCAT
Shewanella denitrificans OS217 Sden_1751 -131 4.5 TTGGAAAGATAAGCTGACAA
Shewanella frigidimarina NCIMB 400 Sfri_2125 -328 4.3 TTGGAAAGTTAACGTAACAA
-107 4.1 CTGTAATGAATTTGTTCCAC
Shewanella amazonensis SB2B Sama_1734 -266 3.8 ATGGCAACAAATCTTGCAAT
Shewanella loihica PV-4 Shew_1952 -268 4 TTGGCAAATTTTCATGCCAG
Shewanella pealeana ATCC 700345 Spea_2071 -290 4.2 CCGGAAATTTTTAGTTCCAC
Shewanella sediminis HAW-EB3 Ssed_2300 -334 3.8 ATGGCATGAAATTGTTCCAG
Shewanella woodyi ATCC 51908 Swoo_2309 -323 3.8 CTGGCATGTTTTTCTTCCAC
-89 3.9 TTGTGTATCAATATTTGCAA
Position: -156
Score: 4
Sequence: TTGGCAGGCTTTTTTGCCAA
Locus tag: Shew185_2282
Shew185_2282 -156 4 TTGGCAGGCTTTTTTGCCAA
Supported by regulated orthologs from reference regulons