Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of Fnr regulog to Shewanella piezotolerans WP3

Reference regulog properties
Source regulog: Fnr - Shewanellaceae
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode:
Biological process: Anaerobic metabolism
Effector: Oxygen
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Shewanella piezotolerans WP3
Orthologous TF(s) swp_2580
Regulated genes 31
Built upon 541 sites [see more]
Predicted regulatory interactions in Shewanella piezotolerans WP3
Locus tag Position Score Sequence
Position: -113
Score: 4.6
Sequence: TCGATCTAGATCAT
Locus tag: swp_0235
swp_0235 -113 4.6 TCGATCTAGATCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: oprP
Ortholog function: Phosphate-specific outer membrane porin
Shewanella frigidimarina NCIMB 400 Sfri_3882 -109 4.2 TTGATGGCGATCAT
Shewanella piezotolerans WP3 swp_0235 -113 4.6 TCGATCTAGATCAT
Shewanella sediminis HAW-EB3 Ssed_0367 -110 4.6 TTGAGCTGGATCAC
Position: -301
Score: 4.9
Sequence: TAGATCTAGATCAA
Position: -131
Score: 5
Sequence: TTGATCTGGATCGA
Locus tag: swp_0240
swp_0240 -301 4.9 TAGATCTAGATCAA
-131 5 TTGATCTGGATCGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sfri_3879
Ortholog function: Predicted sodium/sulphate symporter
Shewanella frigidimarina NCIMB 400 Sfri_3879 -249 4.4 AAGATCCAGATCAA
-79 5 TTGATCTAGATCGA
Shewanella piezotolerans WP3 swp_0240 -301 4.9 TAGATCTAGATCAA
-131 5 TTGATCTGGATCGA
Shewanella sediminis HAW-EB3 Ssed_0363 -250 4.4 ACGATCCAGATCAA
-212 4.3 TTGATCTGACACAA
-80 4.4 TTGATCTCGATCGT
Position: -134
Score: 4.1
Sequence: GTGATCTTGCTCTA
Locus tag: swp_0428
swp_0428 -134 4.1 GTGATCTTGCTCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: frdC2
Ortholog function: Fumarate reductase, cytochrome b subunit
Shewanella halifaxensis HAW-EB4 Shal_3899 -134 3.9 GTGATCTACGTCTA
Shewanella loihica PV-4 Shew_0332 -122 3.9 GTGATCGACGTCAA
Shewanella pealeana ATCC 700345 Spea_0392 -134 4.4 GTGATCTTGATCTA
Shewanella piezotolerans WP3 swp_0428 -134 4.1 GTGATCTTGCTCTA
Shewanella putrefaciens CN-32 Sputcn32_3441 -108 3.8 GTGAGGTAGCTCAC
Shewanella sediminis HAW-EB3 Ssed_4116 -122 4.3 GTGATCTGCTTCAA
Shewanella sp W3-18-1 Sputw3181_0498 -108 3.8 GTGAGGTAGCTCAC
Shewanella woodyi ATCC 51908 Swoo_0507 -134 4.4 GTGATGTGGTTCAA
Position: -90
Score: 4.1
Sequence: TTGATCTATCTCAC
Locus tag: swp_0429
swp_0429 -90 4.1 TTGATCTATCTCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: frdC1
Ortholog function: Fumarate reductase, cytochrome b subunit
Shewanella baltica OS155 Sbal_3936 -101 4.6 TTGATCTGGCTCAC
Shewanella halifaxensis HAW-EB4 Shal_3898 -134 3.9 GTGATCTACGTCTA
Shewanella loihica PV-4 Shew_0333 -122 3.9 GTGATCGACGTCAA
Shewanella oneidensis MR-1 SO0397 -105 4.3 TTGATCTAACTCAG
Shewanella pealeana ATCC 700345 Spea_0393 -134 4.4 GTGATCTTGATCTA
Shewanella piezotolerans WP3 swp_0429 -134 4.1 GTGATCTTGCTCTA
Shewanella putrefaciens CN-32 Sputcn32_3440 -108 3.8 GTGAGGTAGCTCAC
Shewanella sediminis HAW-EB3 Ssed_4115 -100 4.3 TTGATCTGCCTCAC
Shewanella sp ANA-3 Shewana3_0402 -103 4.3 TTGATCTAACTCAG
Shewanella sp MR-4 Shewmr4_0403 -103 4.3 TTGATCTAACTCAG
Shewanella sp MR-7 Shewmr7_3622 -102 4.3 TTGATCTAACTCAG
Shewanella sp W3-18-1 Sputw3181_0499 -108 3.8 GTGAGGTAGCTCAC
Shewanella woodyi ATCC 51908 Swoo_0508 -134 4.4 GTGATGTGGTTCAA
Position: -80
Score: 4.5
Sequence: ATGAGCTAGCGCAA
Locus tag: swp_0691
swp_0691 -80 4.5 ATGAGCTAGCGCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: Spea_3602
Ortholog function: Predicted sensor histidine kinase, two-component system
Shewanella pealeana ATCC 700345 Spea_3602 -80 4.4 ATGAACTAGCGCAA
Shewanella piezotolerans WP3 swp_0691 -80 4.5 ATGAGCTAGCGCAA
Position: -79
Score: 4.8
Sequence: TTGTTCTGGATCAA
Locus tag: swp_1107
swp_1107 -79 4.8 TTGTTCTGGATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: Shew_2655
Ortholog function: Conserved hypothetical protein
Shewanella halifaxensis HAW-EB4 Shal_3305 -79 4.5 TTGTTTTAGATCAA
Shewanella loihica PV-4 Shew_2655 -80 4.5 TTGTTTTAGATCAA
Shewanella pealeana ATCC 700345 Spea_3233 -79 4.5 TTGTTTTAGATCAA
Shewanella piezotolerans WP3 swp_1107 -128 4.1 ATGATCTTGCTCAC
-79 4.8 TTGTTCTGGATCAA
Shewanella sediminis HAW-EB3 Ssed_3185 -139 4.2 TTGATCTTAATCAC
-90 4.2 TTGTTTCAGATCAA
Shewanella woodyi ATCC 51908 Swoo_3303 -78 4.5 TTGTTCCAGATCAA
Position: -35
Score: 5.2
Sequence: TTGATATAGATCAA
Locus tag: swp_1175
swp_1175 -35 5.2 TTGATATAGATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: bfr2
Ortholog function: Bacterioferritin
Shewanella amazonensis SB2B Sama_2530 -41 5.4 TTGATGTAGATCAA
Shewanella baltica OS155 Sbal_0932 -44 5.3 TTGATTTAGATCAA
Shewanella denitrificans OS217 Sden_0990 -36 4.6 TTGATTTGGATCAC
Shewanella frigidimarina NCIMB 400 Sfri_0957 -37 4.5 TTGATCGAGATCAC
Shewanella halifaxensis HAW-EB4 Shal_3179 -33 5.2 TTGATATAGATCAA
Shewanella loihica PV-4 Shew_2873 -33 5.3 TTGATTTAGATCAA
Shewanella oneidensis MR-1 SO1111 -43 5.3 TTGATTTAGATCAA
Shewanella pealeana ATCC 700345 Spea_3095 -33 5.2 TTGATATAGATCAA
Shewanella piezotolerans WP3 swp_1175 -35 5.2 TTGATATAGATCAA
Shewanella putrefaciens CN-32 Sputcn32_0948 -44 5.3 TTGATTTAGATCAA
Shewanella sediminis HAW-EB3 Ssed_2230 -31 5.2 TTGATATAGATCAA
Shewanella sp ANA-3 Shewana3_0946 -43 5.3 TTGATTTAGATCAA
Shewanella sp MR-4 Shewmr4_0944 -42 5.3 TTGATTTAGATCAA
Shewanella sp MR-7 Shewmr7_0982 -43 5.3 TTGATTTAGATCAA
Shewanella sp W3-18-1 Sputw3181_3228 -44 5.3 TTGATTTAGATCAA
Shewanella woodyi ATCC 51908 Swoo_3608 -85 5.4 TTGATGTAGATCAA
Position: -332
Score: 4.9
Sequence: TTGATTTGAATCAA
Position: -51
Score: 4.4
Sequence: TTGATGGGGATCTA
Locus tag: swp_1469
swp_1469 -332 4.9 TTGATTTGAATCAA
-51 4.4 TTGATGGGGATCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cydA
Ortholog function: Cytochrome d ubiquinol oxidase, subunit I (EC 1.10.3.-)
Shewanella amazonensis SB2B Sama_2349 -334 4.3 TTGATTTACGTCAA
Shewanella baltica OS155 Sbal_2979 -342 4.9 TTGATTTGCATCAA
Shewanella denitrificans OS217 Sden_1274 -153 5.3 TTGATCTAAATCAA
Shewanella frigidimarina NCIMB 400 Sfri_1142 -338 4.2 ATGATTGTGATCAA
Shewanella halifaxensis HAW-EB4 Shal_1381 -336 4.9 TTGATTTGAATCAA
-51 4.4 TTGATGGGGATCTA
Shewanella loihica PV-4 Shew_1302 -341 4.9 TTGATTTGAATCAA
-51 4.4 TTGATGGGGATCTA
Shewanella oneidensis MR-1 SO3286 -338 4.9 TTGATTTGAATCAA
Shewanella pealeana ATCC 700345 Spea_1318 -337 4.9 TTGATTTGAATCAA
-51 4.4 TTGATGGGGATCTA
Shewanella piezotolerans WP3 swp_1469 -332 4.9 TTGATTTGAATCAA
-51 4.4 TTGATGGGGATCTA
Shewanella putrefaciens CN-32 Sputcn32_2641 -339 4.9 TTGATTTGAATCAA
Shewanella sediminis HAW-EB3 Ssed_3118 -336 4.9 TTGATTTGAATCAA
Shewanella sp ANA-3 Shewana3_1241 -338 4.9 TTGATTTGAATCAA
Shewanella sp MR-4 Shewmr4_1239 -338 4.9 TTGATTTGAATCAA
Shewanella sp MR-7 Shewmr7_1310 -338 4.9 TTGATTTGAATCAA
Shewanella sp W3-18-1 Sputw3181_1366 -339 4.9 TTGATTTGAATCAA
Shewanella woodyi ATCC 51908 Swoo_1565 -334 4.9 TTGATTTGAATCAA
-51 4.2 ATGATGGGGATCTA
Position: -72
Score: 4.9
Sequence: TTGATTTAAATCAA
Locus tag: swp_1991
swp_1991 -72 4.9 TTGATTTAAATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: aer
Ortholog function: Aerotaxis sensor receptor protein
Shewanella baltica OS155 Sbal_1238 -82 4 GTGAGCTTTATCAA
Shewanella halifaxensis HAW-EB4 Shal_2428 -78 3.9 TTGATAGCAATCAA
Shewanella oneidensis MR-1 SO3404 -80 4.2 GTGAACTTAATCAA
Shewanella piezotolerans WP3 swp_1991 -72 4.9 TTGATTTAAATCAA
Shewanella putrefaciens CN-32 Sputcn32_2726 -32 4.2 GTGAGCTTAATCAA
Shewanella sp ANA-3 Shewana3_1150 -80 4.2 GTGAGCTTAATCAA
Shewanella sp MR-4 Shewmr4_1149 -80 4.2 GTGAGCTTAATCAA
Shewanella sp MR-7 Shewmr7_1220 -80 4.2 GTGAGCTTAATCAA
Shewanella sp W3-18-1 Sputw3181_1286 -32 4.2 GTGAGCTTAATCAA
Position: -95
Score: 4.7
Sequence: TTGAGATAGATCAT
Locus tag: swp_2388
swp_2388 -95 4.7 TTGAGATAGATCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pykA
Ortholog function: Pyruvate kinase (EC 2.7.1.40)
Shewanella amazonensis SB2B Sama_1814 -96 4.7 TTGAGATAGATCAT
Shewanella halifaxensis HAW-EB4 Shal_1947 -95 4.7 TTGAGTTAGATCAT
Shewanella loihica PV-4 Shew_2050 -94 4.7 TTGAGATAGATCAT
Shewanella pealeana ATCC 700345 Spea_2337 -95 4.7 TTGAGTTAGATCAT
Shewanella piezotolerans WP3 swp_2388 -95 4.7 TTGAGATAGATCAT
Shewanella sediminis HAW-EB3 Ssed_2068 -95 4.7 TTGCGCTAGATCAT
Shewanella woodyi ATCC 51908 Swoo_2541 -95 4.7 TTGCGCTAGATCAT
Position: -217
Score: 5.6
Sequence: TTGATCTAGATCAA
Locus tag: swp_2572
swp_2572 -217 5.6 TTGATCTAGATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ccoN
Ortholog function: Cytochrome c oxidase, cbb3-type, subunit CcoN (EC 1.9.3.1)
Shewanella amazonensis SB2B Sama_1791 -218 5.3 TTGATCCAGATCAA
Shewanella baltica OS155 Sbal_2201 -212 5.6 TTGATCTAGATCAA
-169 4.5 TTGATATTGCTCAA
Shewanella baltica OS155 Sbal_4487 -212 5.6 TTGATCTAGATCAA
-169 4.5 TTGATATTGCTCAA
Shewanella denitrificans OS217 Sden_1851 -220 5.3 TTGATCCAGATCAA
-178 5.1 TTGATGTAGCTCAA
Shewanella frigidimarina NCIMB 400 Sfri_2010 -224 5.6 TTGATCTAGATCAA
-182 4.3 TTGACTTAGCTCAA
Shewanella halifaxensis HAW-EB4 Shal_2197 -217 5.6 TTGATCTAGATCAA
-174 4.9 TTGATATAGCTCAA
Shewanella loihica PV-4 Shew_1985 -217 5.6 TTGATCTGGATCAA
-174 4.5 TTGATATTGCTCAA
Shewanella oneidensis MR-1 SO2364 -212 5.6 TTGATCTAGATCAA
-169 4.2 TTGACATGGCTCAA
-106 4.3 TTGACATAGCTCAA
Shewanella pealeana ATCC 700345 Spea_2214 -215 5.6 TTGATCTAGATCAA
-172 4.9 TTGATATAGCTCAA
Shewanella piezotolerans WP3 swp_2572 -217 5.6 TTGATCTAGATCAA
-174 4.3 TTGACATAGCTCAA
Shewanella putrefaciens CN-32 Sputcn32_1959 -210 5.6 TTGATCTAGATCAA
-167 3.9 TTGACATTGCTCAA
Shewanella sediminis HAW-EB3 Ssed_2211 -216 5.6 TTGATCTAGATCAA
-173 4.3 TTGACATAGCTCAA
Shewanella sp ANA-3 Shewana3_2107 -210 5.6 TTGATCTAGATCAA
-167 4.2 TTGACATGGCTCAA
Shewanella sp MR-4 Shewmr4_2006 -210 5.6 TTGATCTAGATCAA
-167 4.2 TTGACATGGCTCAA
Shewanella sp MR-7 Shewmr7_1969 -210 5.6 TTGATCTAGATCAA
-167 4.2 TTGACATGGCTCAA
Shewanella sp W3-18-1 Sputw3181_2046 -210 5.6 TTGATCTAGATCAA
-167 3.9 TTGACATTGCTCAA
Shewanella woodyi ATCC 51908 Swoo_2425 -216 5.6 TTGATCTAGATCAA
-173 4.3 TTGACATAGCTCAA
Position: -71
Score: 4.6
Sequence: TTGATCTAAAACAA
Locus tag: swp_2581
swp_2581 -71 4.6 TTGATCTAAAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: uspE
Ortholog function: Universal stress protein E
Shewanella amazonensis SB2B Sama_1800 -74 4.6 TTGATCTAAAACAA
Shewanella baltica OS155 Sbal_2210 -72 4.9 TTGATCTAGAACAA
Shewanella baltica OS155 Sbal_4496 -72 4.9 TTGATCTAGAACAA
Shewanella denitrificans OS217 Sden_1842 -69 4.2 TTGATATAGCTCAC
Shewanella frigidimarina NCIMB 400 Sfri_2019 -87 4.6 ATGATCTATCTCAA
Shewanella halifaxensis HAW-EB4 Shal_2206 -73 4.6 TTGATCTAAAACAA
Shewanella loihica PV-4 Shew_1994 -72 4.6 TTGATCTAAAACAA
Shewanella oneidensis MR-1 SO2355 -72 4.9 TTGATCTAGAACAA
Shewanella pealeana ATCC 700345 Spea_2223 -74 4.6 TTGATCTAAAACAA
Shewanella piezotolerans WP3 swp_2581 -71 4.6 TTGATCTAAAACAA
Shewanella putrefaciens CN-32 Sputcn32_1950 -72 4.9 TTGATCTAGAACAA
Shewanella sediminis HAW-EB3 Ssed_2220 -71 4.6 TTGATCTGAAACAA
Shewanella sp ANA-3 Shewana3_2116 -72 4.9 TTGATCTAGAACAA
Shewanella sp MR-4 Shewmr4_2015 -72 4.9 TTGATCTAGAACAA
Shewanella sp MR-7 Shewmr7_1960 -72 4.9 TTGATCTAGAACAA
Shewanella sp W3-18-1 Sputw3181_2055 -72 4.9 TTGATCTAGAACAA
Shewanella woodyi ATCC 51908 Swoo_2416 -70 4.9 TTGATCTAAAGCAA
Position: -149
Score: 3.9
Sequence: GTGAAGTGTATCAT
Locus tag: swp_2753
swp_2753 -149 3.9 GTGAAGTGTATCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ydhD
Ortholog function: Glutaredoxin-related protein
Shewanella amazonensis SB2B Sama_1919 -169 4.5 GTGATGTGAATCAT
Shewanella baltica OS155 Sbal_1783 -152 4.5 GTGATGTGAATCAT
Shewanella denitrificans OS217 Sden_1640 -133 4.5 GTGATGTGCATCAT
Shewanella frigidimarina NCIMB 400 Sfri_1748 -151 4.5 GTGATGTGAATCAT
Shewanella halifaxensis HAW-EB4 Shal_2335 -150 3.9 GTGAAGTGTATCAT
Shewanella loihica PV-4 Shew_1835 -160 4.5 GTGATGTGAATCAT
Shewanella oneidensis MR-1 SO2880 -153 4.5 GTGATGTGAATCAT
Shewanella pealeana ATCC 700345 Spea_1964 -150 3.9 GTGAAGTGTATCAT
Shewanella piezotolerans WP3 swp_2753 -149 3.9 GTGAAGTGTATCAT
Shewanella putrefaciens CN-32 Sputcn32_1688 -152 4.5 GTGATGTGAATCAT
Shewanella sp ANA-3 Shewana3_1640 -153 4.5 GTGATGTGAATCAT
Shewanella sp MR-4 Shewmr4_1573 -153 4.5 GTGATGTGAATCAT
Shewanella sp MR-7 Shewmr7_1648 -153 4.5 GTGATGTGAATCAT
Shewanella sp W3-18-1 Sputw3181_2337 -152 4.5 GTGATGTGAATCAT
Position: -184
Score: 4.4
Sequence: TTGATATAGCTCTA
Locus tag: swp_2949
swp_2949 -184 4.4 TTGATATAGCTCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: sucA
Ortholog function: 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)
Shewanella amazonensis SB2B Sama_1427 -165 4 ATGATATAGCTCAG
Shewanella halifaxensis HAW-EB4 Shal_2489 -183 4.4 TTGATATAGCTCTA
Shewanella pealeana ATCC 700345 Spea_1788 -186 4.4 TTGATATAGCTCTA
Shewanella piezotolerans WP3 swp_2949 -184 4.4 TTGATATAGCTCTA
Position: -86
Score: 4.9
Sequence: TTGATGTATATCAA
Locus tag: swp_3063
swp_3063 -86 4.9 TTGATGTATATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hupE
Ortholog function: Predicted metal transporter
Shewanella baltica OS155 Sbal_3991 -82 4.4 GTGATTGAGATCAA
Shewanella oneidensis MR-1 SO4304 -91 4.2 GTGATAAGGATCAA
Shewanella piezotolerans WP3 swp_3063 -86 4.9 TTGATGTATATCAA
Shewanella putrefaciens CN-32 Sputcn32_3578 -97 4.3 GTGATTAGGATCAA
Shewanella sediminis HAW-EB3 Ssed_4125 -87 4.8 TTGATATGCATCAA
Shewanella sp ANA-3 Shewana3_0395 -93 4.2 GTGATAAGGATCAA
Shewanella sp MR-4 Shewmr4_0396 -91 4.2 GTGATAAGGATCAA
Shewanella sp MR-7 Shewmr7_3629 -92 4.2 GTGATAAGGATCAA
Shewanella sp W3-18-1 Sputw3181_3717 -97 4.3 GTGATTAGGATCAA
Position: -122
Score: 5.4
Sequence: ATGATCTGGATCAA
Locus tag: swp_3165
swp_3165 -122 5.4 ATGATCTGGATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrdD
Ortholog function: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Shewanella amazonensis SB2B Sama_1275 -114 4.6 ATGATCCATATCAA
Shewanella baltica OS155 Sbal_1665 -122 5.2 ATGATCTGGATCAT
Shewanella denitrificans OS217 Sden_1419 -166 5.5 ATGATCTAGATCAA
Shewanella frigidimarina NCIMB 400 Sfri_2443 -106 5.4 ATGATCTGGATCAA
Shewanella halifaxensis HAW-EB4 Shal_2692 -123 5.4 ATGATCTGGATCAA
Shewanella loihica PV-4 Shew_2449 -122 5.4 ATGATCTGGATCAA
Shewanella oneidensis MR-1 SO2834 -269 4 TTGATTTTAAGCAT
-121 5.2 ATGATCTGGATCAT
Shewanella pealeana ATCC 700345 Spea_2619 -123 5.4 ATGATCTGGATCAA
Shewanella piezotolerans WP3 swp_3165 -122 5.4 ATGATCTGGATCAA
-62 3.8 TTGATTTAAAGTAA
Shewanella putrefaciens CN-32 Sputcn32_1540 -203 3.9 ATGACTTAGGTCAA
-121 5.2 ATGATCTGGATCAT
Shewanella sediminis HAW-EB3 Ssed_1600 -122 5 ATGATCGAGATCAA
Shewanella sp ANA-3 Shewana3_2603 -121 5.2 ATGATCTGGATCAT
Shewanella sp MR-4 Shewmr4_2441 -121 5.2 ATGATCTGGATCAT
Shewanella sp MR-7 Shewmr7_2511 -121 5.2 ATGATCTGGATCAT
Shewanella sp W3-18-1 Sputw3181_2559 -203 3.9 ATGACTTAGGTCAA
-121 5.2 ATGATCTGGATCAT
Shewanella woodyi ATCC 51908 Swoo_3049 -122 4.8 ATGATCAGGATCAA
Position: -91
Score: 4.9
Sequence: TTGATCTAGATAAA
Locus tag: swp_3271
swp_3271 -91 4.9 TTGATCTAGATAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: feoA
Ortholog function: Ferrous iron transport protein A
Shewanella baltica OS155 Sbal_1594 -272 4 GTGATGTTGATCAC
-87 4.3 TTGATCTAGGTAAA
Shewanella halifaxensis HAW-EB4 Shal_2777 -275 4.1 GTGATCTGTGTCAA
-92 4.3 TTGATCTAGGTAAA
Shewanella loihica PV-4 Shew_2518 -241 4.6 GTGATCTAGATCAC
-89 4.9 TTGATCTAGATAAA
Shewanella oneidensis MR-1 SO1783 -87 4.3 TTGATCTAGGTAAA
Shewanella pealeana ATCC 700345 Spea_2691 -92 4.3 TTGATCTAGGTAAA
Shewanella piezotolerans WP3 swp_3271 -91 4.9 TTGATCTAGATAAA
Shewanella putrefaciens CN-32 Sputcn32_1480 -89 4.3 TTGATCTAGGTAAA
Shewanella sediminis HAW-EB3 Ssed_1531 -92 4.3 TTGATCTAGGTAAA
Shewanella sp ANA-3 Shewana3_2671 -87 4.3 TTGATCTAGGTAAA
Shewanella sp MR-4 Shewmr4_2505 -87 4.3 TTGATCTAGGTAAA
Shewanella sp MR-7 Shewmr7_2573 -87 4.3 TTGATCTAGGTAAA
Shewanella sp W3-18-1 Sputw3181_2621 -89 4.3 TTGATCTAGGTAAA
Position: -181
Score: 3.8
Sequence: GTGACGTAGATCAC
Locus tag: swp_3272
swp_3272 -181 3.8 GTGACGTAGATCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: mtrD
Ortholog function: Periplasmic decaheme cytochrome c, MtrD
Shewanella amazonensis SB2B Sama_1213 -377 3.8 TTAATCTCAATCAT
Shewanella baltica OS155 Sbal_1593 -362 4.2 TTTACCTAGATCAA
Shewanella halifaxensis HAW-EB4 Shal_2778 -363 4.2 TTTACCTAGATCAA
Shewanella loihica PV-4 Shew_2519 -318 4.9 TTTATCTAGATCAA
-166 4.6 GTGATCTAGATCAC
Shewanella oneidensis MR-1 SO1782 -397 4.2 TTTACCTAGATCAA
Shewanella pealeana ATCC 700345 Spea_2692 -344 4.2 TTTACCTAGATCAA
Shewanella piezotolerans WP3 swp_3272 -366 4.9 TTTATCTAGATCAA
-181 3.8 GTGACGTAGATCAC
Shewanella sediminis HAW-EB3 Ssed_1530 -349 4.2 TTTACCTAGATCAA
Shewanella sp ANA-3 Shewana3_2672 -353 4.2 TTTACCTAGATCAA
Shewanella sp MR-4 Shewmr4_2506 -353 4.2 TTTACCTAGATCAA
Shewanella sp MR-7 Shewmr7_2574 -353 4.2 TTTACCTAGATCAA
Position: -107
Score: 5.6
Sequence: TTGATCTAGATCAA
Locus tag: swp_3395
swp_3395 -107 5.6 TTGATCTAGATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ompW
Ortholog function: Outer membrane protein W precursor
Shewanella amazonensis SB2B Sama_1371 -105 5.2 TTGATTTGGATCAA
Shewanella baltica OS155 Sbal_1490 -103 5.2 TTGATTTGGATCAA
Shewanella denitrificans OS217 Sden_2589 -153 4.5 GTGAATTAGATCAA
-103 5.3 TTGATCCAGATCAA
Shewanella frigidimarina NCIMB 400 Sfri_1334 -166 4.6 GTGATCCAAATCAA
-105 5.3 TTGATCTAAATCAA
Shewanella halifaxensis HAW-EB4 Shal_2887 -107 4.4 TTGATTCAGGTCAA
Shewanella oneidensis MR-1 SO1673 -293 4.3 TTGATGTAAATGAA
-106 5.2 TTGATTTGGATCAA
Shewanella pealeana ATCC 700345 Spea_2787 -155 4.3 GTGATCTAGATCCT
-104 5.3 TTGATTTAGATCAA
Shewanella piezotolerans WP3 swp_3395 -107 5.6 TTGATCTAGATCAA
Shewanella putrefaciens CN-32 Sputcn32_1392 -103 5.3 TTGATTTAGATCAA
Shewanella sediminis HAW-EB3 Ssed_1469 -154 3.8 GTGAGCTTGGTCAT
-104 5.6 TTGATCTGGATCAA
Shewanella sp ANA-3 Shewana3_2775 -103 5.2 TTGATTTGGATCAA
Shewanella sp MR-4 Shewmr4_2601 -103 5.2 TTGATTTGGATCAA
Shewanella sp MR-7 Shewmr7_2668 -103 5.2 TTGATTTGGATCAA
Shewanella sp W3-18-1 Sputw3181_2709 -103 5.3 TTGATTTAGATCAA
Shewanella woodyi ATCC 51908 Swoo_3207 -154 4.1 GTGAGTTCGATCAA
-104 5.2 TTGATTTGGATCAA
Position: -128
Score: 4.8
Sequence: CTGATCTAGATCAT
Locus tag: swp_3631
swp_3631 -128 4.8 CTGATCTAGATCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: lldP
Ortholog function: L-lactate permease
Shewanella piezotolerans WP3 swp_3631 -128 4.8 CTGATCTAGATCAT
Shewanella piezotolerans WP3 swp_3632 -128 4.8 CTGATCTAGATCAT
Position: -94
Score: 4
Sequence: TTGACTTAGATCAC
Locus tag: swp_3798
swp_3798 -94 4 TTGACTTAGATCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: cyaB
Ortholog function: Adenylate cyclase (EC 4.6.1.1)
Shewanella amazonensis SB2B Sama_0861 -98 4.3 TTGATTCAGATCAC
Shewanella baltica OS155 Sbal_1182 -97 4.6 TTGATCCAGATCAC
Shewanella denitrificans OS217 Sden_2784 -153 5 TTGATCTAGATCAC
Shewanella frigidimarina NCIMB 400 Sfri_2947 -154 4.6 TTGATCTAAATCAC
Shewanella halifaxensis HAW-EB4 Shal_1065 -95 4 TTGACTTAGATCAC
Shewanella loihica PV-4 Shew_1036 -158 4 TTGACTTAGATCAC
Shewanella oneidensis MR-1 SO1329 -158 4.6 TTGATCCAGATCAC
Shewanella pealeana ATCC 700345 Spea_1019 -96 4 TTGACTTAGATCAC
Shewanella piezotolerans WP3 swp_3798 -94 4 TTGACTTAGATCAC
Shewanella putrefaciens CN-32 Sputcn32_1140 -97 4.6 TTGATCCAGATCAC
Shewanella sp ANA-3 Shewana3_3045 -158 4.6 TTGATCCAGATCAC
Shewanella sp MR-4 Shewmr4_2867 -158 4.6 TTGATCCAGATCAC
Shewanella sp MR-7 Shewmr7_2949 -158 4.6 TTGATCCAGATCAC
Shewanella sp W3-18-1 Sputw3181_3024 -97 4.6 TTGATCCAGATCAC
Position: -123
Score: 4.6
Sequence: TTGATCTAACGCAA
Locus tag: swp_3958
swp_3958 -123 4.6 TTGATCTAACGCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrfA
Ortholog function: Nitrite reductase, cytochrome c(552) (EC 1.7.2.2)
Shewanella amazonensis SB2B Sama_0648 -128 4.3 TTGATCTTGTGCAA
Shewanella baltica OS155 Sbal_0794 -122 5 TTGATCTAGCGCAA
Shewanella frigidimarina NCIMB 400 Sfri_0622 -138 4.9 TTGATCTGGCGCAA
Shewanella halifaxensis HAW-EB4 Shal_0886 -125 4.6 TTGATCTACCGCAA
Shewanella loihica PV-4 Shew_0844 -129 4.8 ATGATCTGCCTCAA
Shewanella oneidensis MR-1 SO3980 -122 5 TTGATCTAGCGCAA
Shewanella pealeana ATCC 700345 Spea_0831 -128 4.6 TTGATCTACCGCAA
Shewanella piezotolerans WP3 swp_3958 -123 4.6 TTGATCTAACGCAA
Shewanella putrefaciens CN-32 Sputcn32_0685 -122 4.9 TTGATCTGGCGCAA
Shewanella sediminis HAW-EB3 Ssed_0931 -127 4.4 TTGATCTACCGCAT
Shewanella sp ANA-3 Shewana3_0658 -104 5 TTGATCTAGCGCAA
Shewanella sp MR-4 Shewmr4_0659 -104 5 TTGATCTAGCGCAA
Shewanella sp MR-7 Shewmr7_3363 -104 5 TTGATCTAGCGCAA
Shewanella sp W3-18-1 Sputw3181_3486 -122 4.9 TTGATCTGGCGCAA
Shewanella woodyi ATCC 51908 Swoo_0972 -127 4.6 TTGATCTACCGCAA
Position: -108
Score: 4.3
Sequence: GTGATACAGATCAT
Locus tag: swp_4258
swp_4258 -108 4.3 GTGATACAGATCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: gltP
Ortholog function: Sodium/glutamate symport protein
Shewanella halifaxensis HAW-EB4 Shal_0827 -107 4.3 GTGATACAGATCAT
Shewanella loihica PV-4 Shew_0743 -153 4.2 TTGATATGAATCAC
Shewanella oneidensis MR-1 SO0922 -171 4 GTGACATAGATCAT
Shewanella pealeana ATCC 700345 Spea_0775 -108 4.9 GTGATGTAGATCAT
Shewanella piezotolerans WP3 swp_4258 -108 4.3 GTGATACAGATCAT
Shewanella putrefaciens CN-32 Sputcn32_0863 -131 4.7 GTGATATAGATCAT
Shewanella sediminis HAW-EB3 Ssed_0862 -169 4.2 TTGATATTGATCAC
Shewanella sp ANA-3 Shewana3_3362 -122 4.7 GTGATATAGATCAT
Shewanella sp MR-4 Shewmr4_0764 -122 4.7 GTGATATAGATCAT
Shewanella sp MR-7 Shewmr7_3259 -122 4.7 GTGATATAGATCAT
Shewanella sp W3-18-1 Sputw3181_3312 -131 4.7 GTGATATAGATCAT
Position: -233
Score: 4
Sequence: TTAATGTAGCGCAA
Position: -138
Score: 4.1
Sequence: TTGATCTTGGTCGA
Locus tag: swp_4456
swp_4456 -233 4 TTAATGTAGCGCAA
-138 4.1 TTGATCTTGGTCGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: napD
Ortholog function: Periplasmic nitrate reductase component NapD
Shewanella baltica OS155 Sbal_3510 -146 4.7 TTGATCCGGATCGA
Shewanella halifaxensis HAW-EB4 Shal_0716 -241 4 TTAATGTAGCGCAA
-146 4.1 TTGATCTCGGTCTA
Shewanella loihica PV-4 Shew_3205 -150 4.7 TTGATCTCGATCTA
Shewanella oneidensis MR-1 SO0849 -146 4.2 TTGATCCCGATCGA
Shewanella pealeana ATCC 700345 Spea_0624 -240 3.8 TTAATATAGCGCAA
-169 4.9 GTGAACTAGATCAA
-145 4.1 TTGATCTCGGTCTA
Shewanella piezotolerans WP3 swp_4456 -233 4 TTAATGTAGCGCAA
-138 4.1 TTGATCTTGGTCGA
Shewanella putrefaciens CN-32 Sputcn32_3147 -143 4.2 TTGATCCCGATCGA
Shewanella sediminis HAW-EB3 Ssed_3956 -159 4.5 ATGATCTCGATCTA
Shewanella sp ANA-3 Shewana3_3429 -145 4.2 TTGATCCCGATCGA
Shewanella sp MR-4 Shewmr4_0705 -145 4.2 TTGATCCCGATCGA
Shewanella sp MR-7 Shewmr7_3317 -145 4.2 TTGATCCCGATCGA
Shewanella sp W3-18-1 Sputw3181_0796 -143 4.2 TTGATCCCGATCGA
Shewanella woodyi ATCC 51908 Swoo_4109 -151 4.6 TTGATCTTGATCGA
Position: 0
Score: 4.4
Sequence: TTGACCAAGATCAA
Locus tag: swp_4510
swp_4510 0 4.4 TTGACCAAGATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sama_0549
Ortholog function: Conserved hypothetical protein
Shewanella amazonensis SB2B Sama_0549 -135 4.6 TTGATTCACATCAA
-75 4.3 TTGATCAAGATCAG
Shewanella baltica OS155 Sbal_3565 -75 4.3 TTGATCAAGATCAG
Shewanella frigidimarina NCIMB 400 Sfri_0507 -75 4.3 TTGATCAAGATCAG
Shewanella halifaxensis HAW-EB4 Shal_0680 -75 4 TTGACTAAGATCAA
Shewanella loihica PV-4 Shew_3247 -87 4.4 TTGATCGAGATCAG
Shewanella pealeana ATCC 700345 Spea_0593 -138 4.2 ATGATCTACAACAT
-78 4.2 TTGACTGAGATCAA
Shewanella piezotolerans WP3 swp_4510 0 4.4 TTGACCAAGATCAA
Shewanella putrefaciens CN-32 Sputcn32_0777 -75 4.2 TTGATCAGGATCAG
Shewanella sediminis HAW-EB3 Ssed_4003 -244 4.2 TTTATCTAGATCAC
-87 4.4 TTGATCGAGATCAG
Shewanella sp ANA-3 Shewana3_0738 -75 4.2 TTGATCAGGATCAG
Shewanella sp W3-18-1 Sputw3181_3398 -75 4.2 TTGATCAGGATCAG
Shewanella woodyi ATCC 51908 Swoo_4146 -77 4.4 TTGATCGAGATCAG
Position: -140
Score: 4.9
Sequence: TTGATATACATCAA
Locus tag: swp_4517
swp_4517 -140 4.9 TTGATATACATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO0579
Ortholog function: Predicted serine/threonine protein kinase
Shewanella amazonensis SB2B Sama_0541 -118 4.9 TTGATTTGCATCAA
Shewanella baltica OS155 Sbal_0539 -154 4.5 TTGATGTAAGTCAA
Shewanella denitrificans OS217 Sden_0539 -87 4.5 TTGATGCAGGTCAA
Shewanella frigidimarina NCIMB 400 Sfri_3500 -226 4.6 TTGATATAGGTCAA
Shewanella halifaxensis HAW-EB4 Shal_0673 -123 4.8 TTGATGTGTATCAA
Shewanella loihica PV-4 Shew_3263 -124 4.6 TTGATATAGGTCAA
Shewanella oneidensis MR-1 SO0579 -145 4.9 TTGATATAAATCAA
Shewanella pealeana ATCC 700345 Spea_0586 -123 4.8 TTGATATGCATCAA
Shewanella piezotolerans WP3 swp_4517 -140 4.9 TTGATATACATCAA
Shewanella putrefaciens CN-32 Sputcn32_3298 -152 4.3 TTGATATAAGTCAA
Shewanella sediminis HAW-EB3 Ssed_4012 -185 4.6 TTGATATAGGTCAA
Shewanella sp ANA-3 Shewana3_0578 -152 4.9 TTGATATAAATCAA
Shewanella sp MR-4 Shewmr4_0579 -154 4.9 TTGATATAAATCAA
Shewanella sp MR-7 Shewmr7_3451 -154 4.9 TTGATATAAATCAA
Shewanella sp W3-18-1 Sputw3181_0643 -152 4.3 TTGATATAAGTCAA
Shewanella woodyi ATCC 51908 Swoo_4155 -226 4.8 TTGATGTAGGTCAA
Position: -135
Score: 4.1
Sequence: GTGATCTGATTCAT
Locus tag: swp_4740
swp_4740 -135 4.1 GTGATCTGATTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: acnB
Ortholog function: Aconitate hydratase 2 (EC 4.2.1.3) / 2-methylisocitrate dehydratase (EC 4.2.1.99)
Shewanella halifaxensis HAW-EB4 Shal_0482 -243 4.3 ATAATTTAGATCAA
Shewanella loihica PV-4 Shew_3424 -136 4.1 GTGATCTGATTCAT
Shewanella pealeana ATCC 700345 Spea_0425 -264 4.3 ATAATTTAGATCAA
Shewanella piezotolerans WP3 swp_4740 -135 4.1 GTGATCTGATTCAT
Shewanella sediminis HAW-EB3 Ssed_0438 -137 4.3 GTGATCTGATTCAA
Shewanella woodyi ATCC 51908 Swoo_0285 -135 4.3 GTGATCTGATTCAA
Position: -80
Score: 4.1
Sequence: CTGATGTGGCGCAA
Locus tag: swp_5008
swp_5008 -80 4.1 CTGATGTGGCGCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: moaB
Ortholog function: Molybdenum cofactor biosynthesis protein MoaB
Shewanella amazonensis SB2B Sama_3525 -145 4.6 ATGATCCAGACCAA
Shewanella loihica PV-4 Shew_0088 -154 4.2 TTGATCTTAAACAA
Shewanella sediminis HAW-EB3 Ssed_4401 -186 4.9 TTGATCTTGAGCAA
Shewanella woodyi ATCC 51908 Swoo_4792 -187 4.6 TTGATCCTGAGCAA
© 2009-2020 RegPrecise