Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of TyrR regulog to Shewanella piezotolerans WP3

Reference regulog properties
Source regulog: TyrR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: TyrR
Regulation mode: activator
Biological process: Amino acid utilization
Effector: Tyrosine; Phenylalanine
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Shewanella piezotolerans WP3
Orthologous TF(s) swp_1652
Regulated genes 20
Built upon 312 sites [see more]
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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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© 2009-2020 RegPrecise
Predicted regulatory interactions in Shewanella piezotolerans WP3
Locus tag Position Score Sequence
Position: -47
Score: 4.4
Sequence: AAGTAAAGCTCACTTTACAA
Locus tag: swp_0181
swp_0181 -47 4.4 AAGTAAAGCTCACTTTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sfri_3409
Ortholog function: hypothetical protein
Shewanella frigidimarina NCIMB 400 Sfri_3409 -99 4.7 AAGTAAAGCTTACTTGACAC
-55 4.3 AAGTCAAGCTTAGTTGACAT
Shewanella loihica PV-4 Shew_3626 -90 4.4 ATGTAAAGCATGCTTGACCT
-45 4.1 ATGTAAAGGGTGTTTGACAT
Shewanella pealeana ATCC 700345 Spea_0139 -106 3.9 AAGTAAAGCAAGCTTGACTT
-62 4.2 AAGTCAAGCGTGCTTTACAT
Shewanella halifaxensis HAW-EB4 Shal_4179 -105 3.9 AAGTAAAGCATGCTTGACTT
-61 4.5 AAGTCAAGCTTACTTTACAT
Shewanella piezotolerans WP3 swp_0181 -47 4.4 AAGTAAAGCTCACTTTACAA
Shewanella sediminis HAW-EB3 Ssed_4363 -111 3.9 AAGTAAAGCAAGCTTGACTT
Position: -140
Score: 4
Sequence: ATGGCAACTTCTGCTGACAC
Locus tag: swp_1180
swp_1180 -140 4 ATGGCAACTTCTGCTGACAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: pepD
Ortholog function: Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3)
Shewanella putrefaciens CN-32 Sputcn32_0954 -108 3.9 CTGGCAACTTTGGCTGCCAG
Shewanella sp W3-18-1 Sputw3181_3222 -108 3.9 CTGGCAACTTTGGCTGCCAG
Shewanella baltica OS155 Sbal_0940 -123 4 CTGGAAACTTTGGCTGCCAG
Shewanella amazonensis SB2B Sama_2519 -123 4.4 CTGGAAACTTTGGCTTCCAC
Shewanella loihica PV-4 Shew_2852 -123 4.6 GTGGCAACTTAGTATGACAC
Shewanella pealeana ATCC 700345 Spea_3091 -141 4.5 GTGGAAACTTTGGCTGACAA
Shewanella halifaxensis HAW-EB4 Shal_3175 -160 4.6 GTGGAAACTTTGCCTGACAA
Shewanella piezotolerans WP3 swp_1180 -140 4 ATGGCAACTTCTGCTGACAC
Shewanella woodyi ATCC 51908 Swoo_3603 -180 3.8 TTGGCAACTTTCAATGACAG
Position: -106
Score: 4
Sequence: GTGTCAGCAGAAGTTGCCAT
Locus tag: swp_1181
swp_1181 -106 4 GTGTCAGCAGAAGTTGCCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO1117
Ortholog function: peptidase M17, leucyl aminopeptidase
Shewanella putrefaciens CN-32 Sputcn32_0955 -116 3.9 CTGGCAGCCAAAGTTGCCAG
Shewanella sp W3-18-1 Sputw3181_3221 -116 3.9 CTGGCAGCCAAAGTTGCCAG
Shewanella baltica OS155 Sbal_0941 -116 4 CTGGCAGCCAAAGTTTCCAG
Shewanella amazonensis SB2B Sama_2518 -45 4.4 GTGGAAGCCAAAGTTTCCAG
Shewanella loihica PV-4 Shew_2851 -320 4.6 GTGTCATACTAAGTTGCCAC
Shewanella pealeana ATCC 700345 Spea_3090 -111 4.5 TTGTCAGCCAAAGTTTCCAC
Shewanella piezotolerans WP3 swp_1181 -106 4 GTGTCAGCAGAAGTTGCCAT
Shewanella woodyi ATCC 51908 Swoo_3602 -151 3.8 CTGTCATTGAAAGTTGCCAA
Position: -188
Score: 4.6
Sequence: CTGTAAATTATGGCTTACAA
Position: -123
Score: 4.5
Sequence: ATGTAAACTTATGGTTACGC
Locus tag: swp_1650
swp_1650 -188 4.6 CTGTAAATTATGGCTTACAA
-123 4.5 ATGTAAACTTATGGTTACGC
Supported by regulated orthologs from reference regulons
Ortholog gene name: phhA
Ortholog function: Phenylalanine-4-hydroxylase (EC 1.14.16.1)
Shewanella oneidensis MR-1 SO_1666 -122 4.4 TTGTAATATTTGCTTTACGT
Shewanella putrefaciens CN-32 Sputcn32_1386 -122 4.4 TTGTAATATTTGCTTTACGT
Shewanella sp W3-18-1 Sputw3181_2715 -122 4.4 TTGTAATATTTGCTTTACGT
Shewanella sp ANA-3 Shewana3_2781 -122 4.4 TTGTAATATTTGCTTTACGT
Shewanella sp MR-4 Shewmr4_2607 -122 4.4 TTGTAATATTTACTTTACGT
Shewanella sp MR-7 Shewmr7_2674 -122 4.4 TTGTAATATTTGCTTTACGT
Shewanella baltica OS155 Sbal_1484 -122 4.4 TTGTAATATTTGCTTTACGT
Shewanella denitrificans OS217 Sden_2595 -127 4.4 TTGTATGCTTAAGTTTACAA
Shewanella frigidimarina NCIMB 400 Sfri_1328 -121 4.1 TTGTATTTATTTGTTTACGA
Shewanella amazonensis SB2B Sama_2222 -123 4.3 TTGTAATAAAAGCTTTACGA
Shewanella loihica PV-4 Shew_1435 -87 4.7 ATGTAAATTTGAGGTTACAT
Shewanella pealeana ATCC 700345 Spea_1448 -239 4.3 GTGTCAATTTCTATATACGC
-173 4.8 GTGTAACATTAGCATTACAC
Shewanella halifaxensis HAW-EB4 Shal_1531 -133 4.3 GTGTAACAACTTCGTTACAC
Shewanella piezotolerans WP3 swp_1650 -188 4.6 CTGTAAATTATGGCTTACAA
-123 4.5 ATGTAAACTTATGGTTACGC
Shewanella sediminis HAW-EB3 Ssed_2930 -188 3.7 TCGTCAATAAATGGTGACGA
-122 4.2 TTGTAAGCAAATTGTTACAC
Shewanella woodyi ATCC 51908 Swoo_1715 -186 3.8 TTGGCAATAATTCAATACGA
-121 4.6 GTGTAACTTTTTGGTTACAA
Position: -308
Score: 4.6
Sequence: CTGTAAACAAGTCTTGCCAC
Locus tag: swp_1652
swp_1652 -308 4.6 CTGTAAACAAGTCTTGCCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: tyrR
Ortholog function: Transcriptional regulator of aromatic amino acid biosynthesis
Shewanella oneidensis MR-1 SO_1669 -190 4.7 CTGTAAACTAGGCTTGCCAC
Shewanella putrefaciens CN-32 Sputcn32_1388 -188 4.8 CTGTAAACTTGACTTGCCAC
Shewanella sp W3-18-1 Sputw3181_2713 -188 4.8 CTGTAAACTTGACTTGCCAC
Shewanella sp ANA-3 Shewana3_2779 -205 4.7 CTGTAAACTAGACTTGCCAC
Shewanella sp MR-4 Shewmr4_2605 -205 4.7 CTGTAAACTAGACTTGCCAC
Shewanella sp MR-7 Shewmr7_2672 -205 4.7 CTGTAAACTAGACTTGCCAC
Shewanella baltica OS155 Sbal_1486 -196 4.7 CTGTAAACTAGGCTTGCCAC
Shewanella denitrificans OS217 Sden_2593 -155 4.6 CTGTAAACAAGACTTGCCAC
Shewanella frigidimarina NCIMB 400 Sfri_1330 -92 4.7 CTGTAAACTTCACTTGCCAC
Shewanella amazonensis SB2B Sama_2220 -134 4.6 CTGTAAACAAGACTTGCCAC
Shewanella loihica PV-4 Shew_1437 -162 4.7 GTGTAAACAACTCTTGCCAC
Shewanella pealeana ATCC 700345 Spea_1450 -158 4.6 CTGTAAACAAGTCTTGCCAC
Shewanella halifaxensis HAW-EB4 Shal_1533 -159 4.1 CTGTAAACAAGCCTTGCCAC
Shewanella piezotolerans WP3 swp_1652 -309 4.6 cTGTAAAcaagtCTTgcCAC
Shewanella sediminis HAW-EB3 Ssed_2928 -151 4.6 CTGTAAACAAGACTTGCCAC
Shewanella woodyi ATCC 51908 Swoo_1717 -161 4.6 CTGTAAACAAGACTTGCCAC
Position: -179
Score: 4.8
Sequence: CTGTAATTATATGTTTACAA
Locus tag: swp_1653
swp_1653 -179 4.8 CTGTAATTATATGTTTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hmgC
Ortholog function: Fumarylacetoacetase (EC 3.7.1.2)
Shewanella oneidensis MR-1 SO_1670 -323 3.8 ATGTAACAGTATCGTTCCAC
-239 4.3 ACGTAATGATTAGTTTACAG
Shewanella putrefaciens CN-32 Sputcn32_1389 -352 3.9 ATGTAACCGTATCGTTCCAC
-268 4 ACGTAATGATTAGTTTACGA
Shewanella sp W3-18-1 Sputw3181_2712 -352 3.9 ATGTAACCGTATCGTTCCAC
-268 4 ACGTAATGATTAGTTTACGA
Shewanella sp ANA-3 Shewana3_2778 -320 3.8 ATGTAACAGTATCGTTCCAC
-236 4.4 ACGTAATGATTAGTTTACAA
Shewanella sp MR-4 Shewmr4_2604 -319 3.8 ATGTAACAGTATCGTTCCAC
-235 4.4 ACGTAATGATTAGTTTACAA
Shewanella sp MR-7 Shewmr7_2671 -319 3.8 ATGTAACAGTATCGTTCCAC
-235 4.4 ACGTAATGATTAGTTTACAA
Shewanella baltica OS155 Sbal_1487 -358 3.8 ATGTAACAGTATCGTTCCAC
-274 4 ACGTAATGATTAGTTTACGA
Shewanella denitrificans OS217 Sden_2592 -228 4.1 ATGTAACGAATTAGTGCCAT
-146 4.1 TTGTACTGAAAAGTTTACAG
Shewanella frigidimarina NCIMB 400 Sfri_1331 -155 4.9 TTGTAACGAATAATTTACAA
Shewanella amazonensis SB2B Sama_2219 -234 4.3 GTGTAAAAAGAATTTGCCAG
-150 4.4 CTGTATTTAAAAGTTTACAA
Shewanella loihica PV-4 Shew_1438 -169 4.5 CTGTCATGAATTGTTTACAA
Shewanella pealeana ATCC 700345 Spea_1451 -197 4.8 GTGTATCTATAAGTTTACAC
Shewanella halifaxensis HAW-EB4 Shal_1534 -183 4.7 CTGTAAGTATAAGTTTACAA
Shewanella piezotolerans WP3 swp_1653 -179 4.8 CTGTAATTATATGTTTACAA
Shewanella sediminis HAW-EB3 Ssed_2927 -238 4 ATGTAAAAGCTTGTTGCCAC
-155 4 GTGTAACTGTTTATTTACGT
Shewanella woodyi ATCC 51908 Swoo_1718 -256 4.2 ATGTAACAAGAGATTGCCAC
-172 4.8 CTGTAATTATTTATTTACAA
Position: -158
Score: 4.8
Sequence: GTGGAAAGCAGAATTGCCAC
Locus tag: swp_1857
swp_1857 -158 4.8 GTGGAAAGCAGAATTGCCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: ldh
Ortholog function: Leucine dehydrogenase (EC 1.4.1.9)
Shewanella oneidensis MR-1 SO_2638 -154 5.2 GTGGAAAGCTAGATTGCCAC
Shewanella putrefaciens CN-32 Sputcn32_2238 -155 5.2 GTGGAAAGCTAAATTGCCAC
Shewanella sp W3-18-1 Sputw3181_1771 -155 5.2 GTGGAAAGCTAAATTGCCAC
Shewanella sp ANA-3 Shewana3_1742 -154 5.2 GTGGAAAGCTAGATTGCCAC
Shewanella sp MR-4 Shewmr4_1598 -154 5.2 GTGGAAAGCTAGATTGCCAC
Shewanella sp MR-7 Shewmr7_1673 -154 5.2 GTGGAAAGCTAGATTGCCAC
Shewanella baltica OS155 Sbal_2483 -134 5.2 GTGGAAAGCTAAATTGCCAC
Shewanella denitrificans OS217 Sden_1823 -140 4.9 GTGGCAAGCAAAATTGCCAC
Shewanella frigidimarina NCIMB 400 Sfri_2265 -178 5.2 GTGGCAAGCTAAATTTCCAC
Shewanella amazonensis SB2B Sama_2067 -147 5.1 GTGGAAAGCAAAATTGCCAC
Shewanella loihica PV-4 Shew_1555 -157 5.1 GTGGAAAGCAAAATTGCCAC
Shewanella pealeana ATCC 700345 Spea_2543 -157 4.9 GTGGAAAGCAAAATTGCCAG
Shewanella halifaxensis HAW-EB4 Shal_1711 -157 4.9 GTGGAAAGCAAAATTGCCAG
Shewanella piezotolerans WP3 swp_1857 -158 4.8 GTGGAAAGCAGAATTGCCAC
Shewanella sediminis HAW-EB3 Ssed_1877 -156 5.2 GTGGAAAGCTAAATTGCCAC
Shewanella woodyi ATCC 51908 Swoo_2710 -157 5.1 GTGGAAAGCAAAATTGCCAC
Position: -147
Score: 4.2
Sequence: TTGGAATCAATAATTGCCAG
Locus tag: swp_2486
swp_2486 -147 4.2 TTGGAATCAATAATTGCCAG
Supported by regulated orthologs from reference regulons