Propagation of TyrR regulog to Shewanella piezotolerans WP3
| Source regulog: | TyrR - Shewanellaceae |
| Regulator type: | Transcription factor |
| Regulator family: | TyrR |
| Regulation mode: | activator |
| Biological process: | Amino acid utilization |
| Effector: | Tyrosine; Phenylalanine |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Shewanella piezotolerans WP3 |
| Orthologous TF(s) | swp_1652 |
| Regulated genes | 20 |
Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -47
Score: 4.4 Sequence: AAGTAAAGCTCACTTTACAA
Locus tag: swp_0181
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| swp_0181 | -47 | 4.4 | AAGTAAAGCTCACTTTACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Sfri_3409 | ||||
| Ortholog function: hypothetical protein | ||||
| Shewanella frigidimarina NCIMB 400 | Sfri_3409 | -99 | 4.7 | AAGTAAAGCTTACTTGACAC |
| -55 | 4.3 | AAGTCAAGCTTAGTTGACAT | ||
| Shewanella loihica PV-4 | Shew_3626 | -90 | 4.4 | ATGTAAAGCATGCTTGACCT |
| -45 | 4.1 | ATGTAAAGGGTGTTTGACAT | ||
| Shewanella pealeana ATCC 700345 | Spea_0139 | -106 | 3.9 | AAGTAAAGCAAGCTTGACTT |
| -62 | 4.2 | AAGTCAAGCGTGCTTTACAT | ||
| Shewanella halifaxensis HAW-EB4 | Shal_4179 | -105 | 3.9 | AAGTAAAGCATGCTTGACTT |
| -61 | 4.5 | AAGTCAAGCTTACTTTACAT | ||
| Shewanella piezotolerans WP3 | swp_0181 | -47 | 4.4 | AAGTAAAGCTCACTTTACAA |
| Shewanella sediminis HAW-EB3 | Ssed_4363 | -111 | 3.9 | AAGTAAAGCAAGCTTGACTT |
|
Position: -140
Score: 4 Sequence: ATGGCAACTTCTGCTGACAC
Locus tag: swp_1180
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| swp_1180 | -140 | 4 | ATGGCAACTTCTGCTGACAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pepD | ||||
| Ortholog function: Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3) | ||||
| Shewanella putrefaciens CN-32 | Sputcn32_0954 | -108 | 3.9 | CTGGCAACTTTGGCTGCCAG |
| Shewanella sp W3-18-1 | Sputw3181_3222 | -108 | 3.9 | CTGGCAACTTTGGCTGCCAG |
| Shewanella baltica OS155 | Sbal_0940 | -123 | 4 | CTGGAAACTTTGGCTGCCAG |
| Shewanella amazonensis SB2B | Sama_2519 | -123 | 4.4 | CTGGAAACTTTGGCTTCCAC |
| Shewanella loihica PV-4 | Shew_2852 | -123 | 4.6 | GTGGCAACTTAGTATGACAC |
| Shewanella pealeana ATCC 700345 | Spea_3091 | -141 | 4.5 | GTGGAAACTTTGGCTGACAA |
| Shewanella halifaxensis HAW-EB4 | Shal_3175 | -160 | 4.6 | GTGGAAACTTTGCCTGACAA |
| Shewanella piezotolerans WP3 | swp_1180 | -140 | 4 | ATGGCAACTTCTGCTGACAC |
| Shewanella woodyi ATCC 51908 | Swoo_3603 | -180 | 3.8 | TTGGCAACTTTCAATGACAG |
|
Position: -106
Score: 4 Sequence: GTGTCAGCAGAAGTTGCCAT
Locus tag: swp_1181
|
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| swp_1181 | -106 | 4 | GTGTCAGCAGAAGTTGCCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO1117 | ||||
| Ortholog function: peptidase M17, leucyl aminopeptidase | ||||
| Shewanella putrefaciens CN-32 | Sputcn32_0955 | -116 | 3.9 | CTGGCAGCCAAAGTTGCCAG |
| Shewanella sp W3-18-1 | Sputw3181_3221 | -116 | 3.9 | CTGGCAGCCAAAGTTGCCAG |
| Shewanella baltica OS155 | Sbal_0941 | -116 | 4 | CTGGCAGCCAAAGTTTCCAG |
| Shewanella amazonensis SB2B | Sama_2518 | -45 | 4.4 | GTGGAAGCCAAAGTTTCCAG |
| Shewanella loihica PV-4 | Shew_2851 | -320 | 4.6 | GTGTCATACTAAGTTGCCAC |
| Shewanella pealeana ATCC 700345 | Spea_3090 | -111 | 4.5 | TTGTCAGCCAAAGTTTCCAC |
| Shewanella piezotolerans WP3 | swp_1181 | -106 | 4 | GTGTCAGCAGAAGTTGCCAT |
| Shewanella woodyi ATCC 51908 | Swoo_3602 | -151 | 3.8 | CTGTCATTGAAAGTTGCCAA |
|
Position: -188
Score: 4.6 Sequence: CTGTAAATTATGGCTTACAA
Position: -123
Score: 4.5 Sequence: ATGTAAACTTATGGTTACGC
Locus tag: swp_1650
|
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| swp_1650 | -188 | 4.6 | CTGTAAATTATGGCTTACAA | |
| -123 | 4.5 | ATGTAAACTTATGGTTACGC | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: phhA | ||||
| Ortholog function: Phenylalanine-4-hydroxylase (EC 1.14.16.1) | ||||
| Shewanella oneidensis MR-1 | SO_1666 | -122 | 4.4 | TTGTAATATTTGCTTTACGT |
| Shewanella putrefaciens CN-32 | Sputcn32_1386 | -122 | 4.4 | TTGTAATATTTGCTTTACGT |
| Shewanella sp W3-18-1 | Sputw3181_2715 | -122 | 4.4 | TTGTAATATTTGCTTTACGT |
| Shewanella sp ANA-3 | Shewana3_2781 | -122 | 4.4 | TTGTAATATTTGCTTTACGT |
| Shewanella sp MR-4 | Shewmr4_2607 | -122 | 4.4 | TTGTAATATTTACTTTACGT |
| Shewanella sp MR-7 | Shewmr7_2674 | -122 | 4.4 | TTGTAATATTTGCTTTACGT |
| Shewanella baltica OS155 | Sbal_1484 | -122 | 4.4 | TTGTAATATTTGCTTTACGT |
| Shewanella denitrificans OS217 | Sden_2595 | -127 | 4.4 | TTGTATGCTTAAGTTTACAA |
| Shewanella frigidimarina NCIMB 400 | Sfri_1328 | -121 | 4.1 | TTGTATTTATTTGTTTACGA |
| Shewanella amazonensis SB2B | Sama_2222 | -123 | 4.3 | TTGTAATAAAAGCTTTACGA |
| Shewanella loihica PV-4 | Shew_1435 | -87 | 4.7 | ATGTAAATTTGAGGTTACAT |
| Shewanella pealeana ATCC 700345 | Spea_1448 | -239 | 4.3 | GTGTCAATTTCTATATACGC |
| -173 | 4.8 | GTGTAACATTAGCATTACAC | ||
| Shewanella halifaxensis HAW-EB4 | Shal_1531 | -133 | 4.3 | GTGTAACAACTTCGTTACAC |
| Shewanella piezotolerans WP3 | swp_1650 | -188 | 4.6 | CTGTAAATTATGGCTTACAA |
| -123 | 4.5 | ATGTAAACTTATGGTTACGC | ||
| Shewanella sediminis HAW-EB3 | Ssed_2930 | -188 | 3.7 | TCGTCAATAAATGGTGACGA |
| -122 | 4.2 | TTGTAAGCAAATTGTTACAC | ||
| Shewanella woodyi ATCC 51908 | Swoo_1715 | -186 | 3.8 | TTGGCAATAATTCAATACGA |
| -121 | 4.6 | GTGTAACTTTTTGGTTACAA | ||
|
Position: -308
Score: 4.6 Sequence: CTGTAAACAAGTCTTGCCAC
Locus tag: swp_1652
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| swp_1652 | -308 | 4.6 | CTGTAAACAAGTCTTGCCAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: tyrR | ||||
| Ortholog function: Transcriptional regulator of aromatic amino acid biosynthesis | ||||
| Shewanella oneidensis MR-1 | SO_1669 | -190 | 4.7 | CTGTAAACTAGGCTTGCCAC |
| Shewanella putrefaciens CN-32 | Sputcn32_1388 | -188 | 4.8 | CTGTAAACTTGACTTGCCAC |
| Shewanella sp W3-18-1 | Sputw3181_2713 | -188 | 4.8 | CTGTAAACTTGACTTGCCAC |
| Shewanella sp ANA-3 | Shewana3_2779 | -205 | 4.7 | CTGTAAACTAGACTTGCCAC |
| Shewanella sp MR-4 | Shewmr4_2605 | -205 | 4.7 | CTGTAAACTAGACTTGCCAC |
| Shewanella sp MR-7 | Shewmr7_2672 | -205 | 4.7 | CTGTAAACTAGACTTGCCAC |
| Shewanella baltica OS155 | Sbal_1486 | -196 | 4.7 | CTGTAAACTAGGCTTGCCAC |
| Shewanella denitrificans OS217 | Sden_2593 | -155 | 4.6 | CTGTAAACAAGACTTGCCAC |
| Shewanella frigidimarina NCIMB 400 | Sfri_1330 | -92 | 4.7 | CTGTAAACTTCACTTGCCAC |
| Shewanella amazonensis SB2B | Sama_2220 | -134 | 4.6 | CTGTAAACAAGACTTGCCAC |
| Shewanella loihica PV-4 | Shew_1437 | -162 | 4.7 | GTGTAAACAACTCTTGCCAC |
| Shewanella pealeana ATCC 700345 | Spea_1450 | -158 | 4.6 | CTGTAAACAAGTCTTGCCAC |
| Shewanella halifaxensis HAW-EB4 | Shal_1533 | -159 | 4.1 | CTGTAAACAAGCCTTGCCAC |
| Shewanella piezotolerans WP3 | swp_1652 | -309 | 4.6 | cTGTAAAcaagtCTTgcCAC |
| Shewanella sediminis HAW-EB3 | Ssed_2928 | -151 | 4.6 | CTGTAAACAAGACTTGCCAC |
| Shewanella woodyi ATCC 51908 | Swoo_1717 | -161 | 4.6 | CTGTAAACAAGACTTGCCAC |
|
Position: -179
Score: 4.8 Sequence: CTGTAATTATATGTTTACAA
Locus tag: swp_1653
|
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| swp_1653 | -179 | 4.8 | CTGTAATTATATGTTTACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hmgC | ||||
| Ortholog function: Fumarylacetoacetase (EC 3.7.1.2) | ||||
| Shewanella oneidensis MR-1 | SO_1670 | -323 | 3.8 | ATGTAACAGTATCGTTCCAC |
| -239 | 4.3 | ACGTAATGATTAGTTTACAG | ||
| Shewanella putrefaciens CN-32 | Sputcn32_1389 | -352 | 3.9 | ATGTAACCGTATCGTTCCAC |
| -268 | 4 | ACGTAATGATTAGTTTACGA | ||
| Shewanella sp W3-18-1 | Sputw3181_2712 | -352 | 3.9 | ATGTAACCGTATCGTTCCAC |
| -268 | 4 | ACGTAATGATTAGTTTACGA | ||
| Shewanella sp ANA-3 | Shewana3_2778 | -320 | 3.8 | ATGTAACAGTATCGTTCCAC |
| -236 | 4.4 | ACGTAATGATTAGTTTACAA | ||
| Shewanella sp MR-4 | Shewmr4_2604 | -319 | 3.8 | ATGTAACAGTATCGTTCCAC |
| -235 | 4.4 | ACGTAATGATTAGTTTACAA | ||
| Shewanella sp MR-7 | Shewmr7_2671 | -319 | 3.8 | ATGTAACAGTATCGTTCCAC |
| -235 | 4.4 | ACGTAATGATTAGTTTACAA | ||
| Shewanella baltica OS155 | Sbal_1487 | -358 | 3.8 | ATGTAACAGTATCGTTCCAC |
| -274 | 4 | ACGTAATGATTAGTTTACGA | ||
| Shewanella denitrificans OS217 | Sden_2592 | -228 | 4.1 | ATGTAACGAATTAGTGCCAT |
| -146 | 4.1 | TTGTACTGAAAAGTTTACAG | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_1331 | -155 | 4.9 | TTGTAACGAATAATTTACAA |
| Shewanella amazonensis SB2B | Sama_2219 | -234 | 4.3 | GTGTAAAAAGAATTTGCCAG |
| -150 | 4.4 | CTGTATTTAAAAGTTTACAA | ||
| Shewanella loihica PV-4 | Shew_1438 | -169 | 4.5 | CTGTCATGAATTGTTTACAA |
| Shewanella pealeana ATCC 700345 | Spea_1451 | -197 | 4.8 | GTGTATCTATAAGTTTACAC |
| Shewanella halifaxensis HAW-EB4 | Shal_1534 | -183 | 4.7 | CTGTAAGTATAAGTTTACAA |
| Shewanella piezotolerans WP3 | swp_1653 | -179 | 4.8 | CTGTAATTATATGTTTACAA |
| Shewanella sediminis HAW-EB3 | Ssed_2927 | -238 | 4 | ATGTAAAAGCTTGTTGCCAC |
| -155 | 4 | GTGTAACTGTTTATTTACGT | ||
| Shewanella woodyi ATCC 51908 | Swoo_1718 | -256 | 4.2 | ATGTAACAAGAGATTGCCAC |
| -172 | 4.8 | CTGTAATTATTTATTTACAA | ||
|
Position: -158
Score: 4.8 Sequence: GTGGAAAGCAGAATTGCCAC
Locus tag: swp_1857
|
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| swp_1857 | -158 | 4.8 | GTGGAAAGCAGAATTGCCAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ldh | ||||
| Ortholog function: Leucine dehydrogenase (EC 1.4.1.9) | ||||
| Shewanella oneidensis MR-1 | SO_2638 | -154 | 5.2 | GTGGAAAGCTAGATTGCCAC |
| Shewanella putrefaciens CN-32 | Sputcn32_2238 | -155 | 5.2 | GTGGAAAGCTAAATTGCCAC |
| Shewanella sp W3-18-1 | Sputw3181_1771 | -155 | 5.2 | GTGGAAAGCTAAATTGCCAC |
| Shewanella sp ANA-3 | Shewana3_1742 | -154 | 5.2 | GTGGAAAGCTAGATTGCCAC |
| Shewanella sp MR-4 | Shewmr4_1598 | -154 | 5.2 | GTGGAAAGCTAGATTGCCAC |
| Shewanella sp MR-7 | Shewmr7_1673 | -154 | 5.2 | GTGGAAAGCTAGATTGCCAC |
| Shewanella baltica OS155 | Sbal_2483 | -134 | 5.2 | GTGGAAAGCTAAATTGCCAC |
| Shewanella denitrificans OS217 | Sden_1823 | -140 | 4.9 | GTGGCAAGCAAAATTGCCAC |
| Shewanella frigidimarina NCIMB 400 | Sfri_2265 | -178 | 5.2 | GTGGCAAGCTAAATTTCCAC |
| Shewanella amazonensis SB2B | Sama_2067 | -147 | 5.1 | GTGGAAAGCAAAATTGCCAC |
| Shewanella loihica PV-4 | Shew_1555 | -157 | 5.1 | GTGGAAAGCAAAATTGCCAC |
| Shewanella pealeana ATCC 700345 | Spea_2543 | -157 | 4.9 | GTGGAAAGCAAAATTGCCAG |
| Shewanella halifaxensis HAW-EB4 | Shal_1711 | -157 | 4.9 | GTGGAAAGCAAAATTGCCAG |
| Shewanella piezotolerans WP3 | swp_1857 | -158 | 4.8 | GTGGAAAGCAGAATTGCCAC |
| Shewanella sediminis HAW-EB3 | Ssed_1877 | -156 | 5.2 | GTGGAAAGCTAAATTGCCAC |
| Shewanella woodyi ATCC 51908 | Swoo_2710 | -157 | 5.1 | GTGGAAAGCAAAATTGCCAC |
|
Position: -147
Score: 4.2 Sequence: TTGGAATCAATAATTGCCAG
Locus tag: swp_2486
|
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| swp_2486 | -147 | 4.2 | TTGGAATCAATAATTGCCAG | |
| Supported by regulated orthologs from reference regulons | ||||