Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of HypR regulog to Shewanella piezotolerans WP3

Reference regulog properties
Source regulog: HypR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode: activator (repressor)
Biological process: Proline and 4-hydrohyproline utilization
Effector: Proline; 4-hydroxyproline
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Shewanella piezotolerans WP3
Orthologous TF(s) swp_1981
Regulated genes 8
Built upon 96 sites [see more]
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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

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Predicted regulatory interactions in Shewanella piezotolerans WP3
Locus tag Position Score Sequence
Position: -35
Score: 4.9
Sequence: ATTGTATGCAAA
Locus tag: swp_1269
swp_1269 -35 4.9 ATTGTATGCAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: colA1
Ortholog function: Microbial collagenase, secreted (EC 3.4.24.3)
Shewanella amazonensis SB2B Sama_1077 -38 5 ATTGCATACAAT
Shewanella loihica PV-4 Shew_2743 -51 5 ATTTTATACAAA
Shewanella pealeana ATCC 700345