Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of Crp regulog to Alteromonas macleodii 'Deep ecotype'

Reference regulog properties
Source regulog: Crp - Shewanellaceae
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: repressor (activator)
Biological process: Carbon catabolism
Effector: Cyclic 3',5'-AMP
Phylum: Proteobacteria
Propagated regulon:
Target genome Alteromonas macleodii 'Deep ecotype'
Orthologous TF(s) No orthologous TFs found
Regulated genes 42
Built upon 2713 sites [see more]
Predicted regulatory interactions in Alteromonas macleodii 'Deep ecotype'
Locus tag Position Score Sequence
Position: -137
Score: 4
Sequence: ATACGTGATATCATGCGTATTT
Locus tag: MADE_00015
MADE_00015 -137 4 ATACGTGATATCATGCGTATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: engB
Ortholog function: GTP-binding protein EngB
Shewanella oneidensis MR-1 SO4667 -96 4.7 TAATGTGATCGGGGTAATATTT
Shewanella putrefaciens CN-32 Sputcn32_3907 -96 4.6 TAATGTGATCGGAGTAATATTT
Shewanella sp W3-18-1 Sputw3181_0044 -96 4.6 TAATGTGATCGGAGTAATATTT
Shewanella sp ANA-3 Shewana3_4110 -96 4.7 TAATGTGATCGGGGTAATATTT
Shewanella sp MR-4 Shewmr4_3906 -96 4.7 TAATGTGATCGGGGTAATATTT
Shewanella sp MR-7 Shewmr7_3998 -96 4.7 TAATGTGATCGGGGTAATATTT
Shewanella baltica OS155 Sbal_0052 -95 4.6 TAATGTGATCGGAGTAATATTT
Shewanella denitrificans OS217 Sden_3621 -182 3.8 TATTATGCTCGAAATAATATTT
Shewanella frigidimarina NCIMB 400 Sfri_3944 -104 4.7 TAATGTGATCAGGCTAATATTT
Shewanella amazonensis SB2B Sama_0092 -96 4.1 ATATGTGATCGGGGCAATATTT
Shewanella loihica PV-4 Shew_3715 -95 4.7 TTATGTGATCGGGGTAATATTT
Shewanella pealeana ATCC 700345 Spea_0101 -96 4.7 TTATGTGATCGGGGTAATATTT
Shewanella halifaxensis HAW-EB4 Shal_4221 -96 4.7 TTATGTGATCGGGGTAATATTT
Shewanella piezotolerans WP3 swp_5074a -96 4.7 TTATGTGATCGGGGTAATATTT
Shewanella sediminis HAW-EB3 Ssed_0095 -95 4.7 TTATGTGATCGAGGTAATATTT
Shewanella woodyi ATCC 51908 Swoo_0058 -110 4.8 TATTGTGATCGAGGTAATATTT
Position: -70
Score: 4.5
Sequence: AAATTTGATCTTTTTAAAATTA
Locus tag: MADE_02616
MADE_02616 -70 4.5 AAATTTGATCTTTTTAAAATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadE
Ortholog function: acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Shewanella loihica PV-4 Shew_3003 -49 4.9 TTTTGTGACGTAATGCACACTA
Shewanella pealeana ATCC 700345 Spea_1234 -68 3.9 AAATTTGATCTATGCCTCGTTT
Shewanella halifaxensis HAW-EB4 Shal_1266 -67 4.4 AAGTTTGATCTACAGCTCATTT
Shewanella piezotolerans WP3 swp_3422 -67 4.4 AAATTTGATCTGCCGCTCAATT
Position: -338
Score: 3.6
Sequence: AAAAGTGATCGCTTACGCTATA
Position: -105
Score: 3.9
Sequence: ATTTGCTATTTTGTTCATAGTT
Locus tag: MADE_02701
MADE_02701 -338 3.6 AAAAGTGATCGCTTACGCTATA
-105 3.9 ATTTGCTATTTTGTTCATAGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadI
Ortholog function: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)
Shewanella oneidensis MR-1 SO3089 -131 3.9 AAGTTAGAATCAGATCACACTT
Shewanella putrefaciens CN-32 Sputcn32_2460 -136 3.9 AAGTTAGAATCAGATCACACTT
Shewanella sp W3-18-1 Sputw3181_1548 -136 3.9 AAGTTAGAATCAGATCACACTT
Shewanella sp ANA-3 Shewana3_1460 -135 3.9 AAGTTAGAATCAGATCACACTT
Shewanella sp MR-4 Shewmr4_1407 -135 3.9 AAGTTAGAATCAGATCACACTT
Shewanella sp MR-7 Shewmr7_1472 -135 3.9 AAGTTAGAATCAGATCACACTT
Shewanella baltica OS155 Sbal_2761 -136 3.9 AAGTTAGAATCAGATCACACTT
Shewanella denitrificans OS217 Sden_1529 -109 3.9 AAGTTAGAATCAGATCACACTT
Shewanella frigidimarina NCIMB 400 Sfri_2677 -104 3.9 AAGTTAGAATCAGATCACACTT
Shewanella amazonensis SB2B Sama_2168 -112 3.6 AAGTTAGAATCGGGTCACACTT
Shewanella loihica PV-4 Shew_2426 -134 3.9 AAGTTAGAATCAGATCACACTT
Shewanella pealeana ATCC 700345 Spea_2599 -116 3.9 AAGTTAGAATCAGATCACACTT
Shewanella halifaxensis HAW-EB4 Shal_2671 -119 3.9 AAGTTAGAATCAGATCACACTT
Shewanella piezotolerans WP3 swp_3140 -122 3.9 AAGTTAGAATCAGATCACACTT
Shewanella sediminis HAW-EB3 Ssed_1628 -151 3.9 AAGTTAGAATCAGATCACACTT
Shewanella woodyi ATCC 51908 Swoo_3027 -138 4.1 AAGTTAGAATCAGATCACATTT
Position: -326
Score: 4.7
Sequence: TATTGTAATCTAAAGCACACTT
Position: -197
Score: 4.1
Sequence: AAATGTGAATTTTTTTTCAAAA
Position: -81
Score: 3.9
Sequence: ATTTATGATACCCTTCGCCTTG
Locus tag: MADE_02749
MADE_02749 -326 4.7 TATTGTAATCTAAAGCACACTT
-197 4.1 AAATGTGAATTTTTTTTCAAAA
-81 3.9 ATTTATGATACCCTTCGCCTTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: ydhD
Ortholog function: Probable monothiol glutaredoxin ydhD
Shewanella oneidensis MR-1 SO2880 -157 4.5 ATTTGTGATGTGAATCATTGTT
Shewanella putrefaciens CN-32 Sputcn32_1688 -156 4.5 ATTTGTGATGTGAATCATTGTT
Shewanella sp W3-18-1 Sputw3181_2337 -156 4.5 ATTTGTGATGTGAATCATTGTT
Shewanella sp ANA-3 Shewana3_1640 -157 4.5 ATTTGTGATGTGAATCATTGTT
Shewanella sp MR-4 Shewmr4_1573 -157 4.5 ATTTGTGATGTGAATCATTGTT
Shewanella sp MR-7 Shewmr7_1648 -157 4.5 ATTTGTGATGTGAATCATTGTT
Shewanella baltica OS155 Sbal_1783 -156 4.5 ATTTGTGATGTGAATCATTGTT
Shewanella denitrificans OS217 Sden_1640 -137 4.5 TTTTGTGATGTGCATCATTGTT
Shewanella frigidimarina NCIMB 400 Sfri_1748 -155 4.5 TTTTGTGATGTGAATCATTGTT
Shewanella amazonensis SB2B Sama_1919 -173 4.2 ATCTGTGATGTGAATCATTCTT
Shewanella loihica PV-4 Shew_1835 -164 4.2 AGTTGTGATGTGAATCATTGTT
Shewanella pealeana ATCC 700345 Spea_1964 -154 3.6 ACTTGTGAAGTGTATCATTGTT
Shewanella halifaxensis HAW-EB4 Shal_2335 -154 3.9 AGTTGTGAAGTGTATCATTGTT
Shewanella piezotolerans WP3 swp_2753 -153 3.6 ACTTGTGAAGTGTATCATTGTT
Position: -173
Score: 3.8
Sequence: TTTTGAAAAAAAATTCACATTT
Position: -44
Score: 4.5
Sequence: AAGTGTGCTTTAGATTACAATA
Locus tag: MADE_02750
MADE_02750 -173 3.8 TTTTGAAAAAAAATTCACATTT
-44 4.5 AAGTGTGCTTTAGATTACAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: sodB
Ortholog function: superoxide dismutase [Fe] (EC 1.15.1.1)
Shewanella oneidensis MR-1 SO2881 -91 4.3 AACAATGATTCACATCACAAAT
Shewanella putrefaciens CN-32 Sputcn32_1687 -91 4.3 AACAATGATTCACATCACAAAT
Shewanella sp W3-18-1 Sputw3181_2338 -91 4.3 AACAATGATTCACATCACAAAT
Shewanella sp ANA-3 Shewana3_1639 -91 4.3 AACAATGATTCACATCACAAAT
Shewanella sp MR-4 Shewmr4_1572 -91 4.3 AACAATGATTCACATCACAAAT
Shewanella sp MR-7 Shewmr7_1647 -91 4.3 AACAATGATTCACATCACAAAT
Shewanella baltica OS155 Sbal_1782 -90 4.3 AACAATGATTCACATCACAAAT
Shewanella denitrificans OS217 Sden_1639 -106 4.3 AACAATGATGCACATCACAAAA
Shewanella frigidimarina NCIMB 400 Sfri_1747 -102 4.2 AACAATGATTCACATCACAAAA
Shewanella amazonensis SB2B Sama_1920 -91 4.2 AAGAATGATTCACATCACAGAT
Shewanella loihica PV-4 Shew_1834 -89 3.8 AACAATGATTCACATCACAACT
Shewanella halifaxensis HAW-EB4 Shal_2336 -93 3.7 AACAATGATACACTTCACAACT
Position: -249
Score: 4
Sequence: ATTGTTAATTTTTTTCACATTA
Locus tag: MADE_03937
MADE_03937 -249 4 ATTGTTAATTTTTTTCACATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nifR3
Ortholog function: tRNA dihydrouridine synthase B (EC 1.-.-.-)
Shewanella loihica PV-4 Shew_0330 -274 3.8 AAGCGTGAGACACCTCACCCTG
-242 4.1 ACATTTGACGTCGATCACAAAC
Shewanella pealeana ATCC 700345 Spea_0390 -283 4.3 TTTCGTGAAGGAACTCACCCTT
-251 4.1 CTATTAGATCAAGATCACAAAT
Shewanella halifaxensis HAW-EB4 Shal_3901 -281 3.9 TTTCGTGATCAGTGTCACTACA
-249 3.7 CTATTAGACGTAGATCACAAAC
Shewanella piezotolerans WP3 swp_0426 -286 4.5 AATCGTGACTTTGCTCACCCTA
Shewanella sediminis HAW-EB3 Ssed_4118 -53 5 TAATGTGATTGGTATTACAATA
Shewanella woodyi ATCC 51908 Swoo_0505 -233 4.5 TTTTTTGAACCACATCACAAAC