Propagation of LiuR regulog to Alteromonas macleodii 'Deep ecotype'
Source regulog: | LiuR - Shewanellaceae |
Regulator type: | Transcription factor |
Regulator family: | MerR |
Regulation mode: | repressor |
Biological process: | Branched-chain amino acid degradation |
Effector: | |
Phylum: | Proteobacteria/gamma |
Propagated regulon: | |
Target genome | Alteromonas macleodii 'Deep ecotype' |
Orthologous TF(s) | MADE_02411 |
Regulated genes | 3 |
Locus tag | Position | Score | Sequence | |
---|---|---|---|---|
Position: -32
Score: 6 Sequence: CTTTACGTTTACGTAAGG
Locus tag: MADE_01905
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MADE_01905 | -32 | 6 | CTTTACGTTTACGTAAGG | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: ivdC | ||||
Ortholog function: branched-chain acyl-CoA dehydrogenase | ||||
Shewanella oneidensis MR-1 | SO_1679 | -96 | 5.9 | CTTTACGTTCGCGTAAAC |
Shewanella putrefaciens CN-32 | Sputcn32_1399 | -104 | 5.9 | CTTTACGTTCGCGTAAAC |
Shewanella sp W3-18-1 | Sputw3181_2702 | -104 | 5.9 | CTTTACGTTCGCGTAAAC |
Shewanella sp ANA-3 | Shewana3_2769 | -96 | 5.9 | CTTTACGTTCGCGTAAAC |
Shewanella sp MR-4 | Shewmr4_2595 | -96 | 5.9 | CTTTACGTTCGCGTAAAC |
Shewanella sp MR-7 | Shewmr7_2662 | -96 | 5.9 | CTTTACGTTCGCGTAAAC |
Shewanella baltica OS155 | Sbal_1497 | -100 | 5.9 | CTTTACGTTCGCGTAAAC |
Shewanella denitrificans OS217 | Sden_1941 | -97 | 6.2 | CTTTACGTTAGCGTAAAC |
Shewanella frigidimarina NCIMB 400 | Sfri_1340 | -78 | 5.6 | CTTTACGTTCGCGTCAAC |
Shewanella amazonensis SB2B | Sama_1377 | -110 | 5.9 | CTTTACGTTCGCGTAAAC |
Shewanella loihica PV-4 | Shew_1669 | -105 | 5.9 | CTTTACGTTCGCGTAAAC |
Shewanella pealeana ATCC 700345 | Spea_2781 | -168 | 5.9 | CTTTACGTTCGCGTAAAC |
Shewanella halifaxensis HAW-EB4 | Shal_2876 | -168 | 5.9 | CTTTACGTTCGCGTAAAC |
Shewanella piezotolerans WP3 | swp_3385 | -206 | 5.9 | CTTTACGTTCGCGTAAAC |
Shewanella sediminis HAW-EB3 | Ssed_1475 | -122 | 5.9 | CTTTACGTTCGCGTAAAC |
Shewanella woodyi ATCC 51908 | Swoo_3200 | -110 | 5.9 | CTTTACGTTCGCGTAAAC |
Position: -98
Score: 5.6 Sequence: GTTTACGTTAACGTTAAT
Position: -76
Score: 5.9 Sequence: TTTTACGTTAAGGTAAAG
Locus tag: MADE_02410
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MADE_02410 | -98 | 5.6 | GTTTACGTTAACGTTAAT | |
-76 | 5.9 | TTTTACGTTAAGGTAAAG | ||
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: ivdA | ||||
Ortholog function: 3-ketoacyl-CoA thiolase | ||||
Shewanella oneidensis MR-1 | SO_1677 | -96 | 5.9 | CTTTACGTTCGCGTAAAC |
Shewanella putrefaciens CN-32 | Sputcn32_1397 | -104 | 5.9 | CTTTACGTTCGCGTAAAC |
Shewanella sp W3-18-1 | Sputw3181_2704 | -104 | 5.9 | CTTTACGTTCGCGTAAAC |
Shewanella sp ANA-3 | Shewana3_2771 | -96 | 5.9 | CTTTACGTTCGCGTAAAC |
Shewanella sp MR-4 | Shewmr4_2597 | -96 | 5.9 | CTTTACGTTCGCGTAAAC |
Shewanella sp MR-7 | Shewmr7_2664 | -96 | 5.9 | CTTTACGTTCGCGTAAAC |
Shewanella baltica OS155 | Sbal_1495 | -100 | 5.9 | CTTTACGTTCGCGTAAAC |
Shewanella denitrificans OS217 | Sden_1943 | -97 | 6.2 | CTTTACGTTAGCGTAAAC |
Shewanella frigidimarina NCIMB 400 | Sfri_1338 | -78 | 5.6 | CTTTACGTTCGCGTCAAC |
Shewanella amazonensis SB2B | Sama_1375 | -110 | 5.9 | CTTTACGTTCGCGTAAAC |
Shewanella loihica PV-4 | Shew_1667 | -105 | 5.9 | CTTTACGTTCGCGTAAAC |
Shewanella pealeana ATCC 700345 | Spea_2783 | -168 | 5.9 | CTTTACGTTCGCGTAAAC |
Shewanella halifaxensis HAW-EB4 | Shal_2878 | -168 | 5.9 | CTTTACGTTCGCGTAAAC |
Shewanella piezotolerans WP3 | swp_3387 | -206 | 5.9 | CTTTACGTTCGCGTAAAC |
Shewanella sediminis HAW-EB3 | Ssed_1473 | -122 | 5.9 | CTTTACGTTCGCGTAAAC |
Shewanella woodyi ATCC 51908 | Swoo_3202 | -110 | 5.9 | CTTTACGTTCGCGTAAAC |