Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of LiuR regulog to Alteromonas macleodii 'Deep ecotype'

Reference regulog properties
Source regulog: LiuR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: MerR
Regulation mode: repressor
Biological process: Branched-chain amino acid degradation
Effector:
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Alteromonas macleodii 'Deep ecotype'
Orthologous TF(s) MADE_02411
Regulated genes 3
Built upon 134 sites [see more]
Predicted regulatory interactions in Alteromonas macleodii 'Deep ecotype'
Locus tag Position Score Sequence
Position: -32
Score: 6
Sequence: CTTTACGTTTACGTAAGG
Locus tag: MADE_01905
MADE_01905 -32 6 CTTTACGTTTACGTAAGG
Supported by regulated orthologs from reference regulons
Ortholog gene name: ivdC
Ortholog function: branched-chain acyl-CoA dehydrogenase
Shewanella oneidensis MR-1 SO_1679 -96 5.9 CTTTACGTTCGCGTAAAC
Shewanella putrefaciens CN-32 Sputcn32_1399 -104 5.9 CTTTACGTTCGCGTAAAC
Shewanella sp W3-18-1 Sputw3181_2702 -104 5.9 CTTTACGTTCGCGTAAAC
Shewanella sp ANA-3 Shewana3_2769 -96 5.9 CTTTACGTTCGCGTAAAC
Shewanella sp MR-4 Shewmr4_2595 -96 5.9 CTTTACGTTCGCGTAAAC
Shewanella sp MR-7 Shewmr7_2662 -96 5.9 CTTTACGTTCGCGTAAAC
Shewanella baltica OS155 Sbal_1497 -100 5.9 CTTTACGTTCGCGTAAAC
Shewanella denitrificans OS217 Sden_1941 -97 6.2 CTTTACGTTAGCGTAAAC
Shewanella frigidimarina NCIMB 400 Sfri_1340 -78 5.6 CTTTACGTTCGCGTCAAC
Shewanella amazonensis SB2B Sama_1377 -110 5.9 CTTTACGTTCGCGTAAAC
Shewanella loihica PV-4 Shew_1669 -105 5.9 CTTTACGTTCGCGTAAAC
Shewanella pealeana ATCC 700345 Spea_2781 -168 5.9 CTTTACGTTCGCGTAAAC
Shewanella halifaxensis HAW-EB4 Shal_2876 -168 5.9 CTTTACGTTCGCGTAAAC
Shewanella piezotolerans WP3 swp_3385 -206 5.9 CTTTACGTTCGCGTAAAC
Shewanella sediminis HAW-EB3 Ssed_1475 -122 5.9 CTTTACGTTCGCGTAAAC
Shewanella woodyi ATCC 51908 Swoo_3200 -110 5.9 CTTTACGTTCGCGTAAAC
Position: -98
Score: 5.6
Sequence: GTTTACGTTAACGTTAAT
Position: -76
Score: 5.9
Sequence: TTTTACGTTAAGGTAAAG
Locus tag: MADE_02410
MADE_02410 -98 5.6 GTTTACGTTAACGTTAAT
-76 5.9 TTTTACGTTAAGGTAAAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: ivdA
Ortholog function: 3-ketoacyl-CoA thiolase
Shewanella oneidensis MR-1 SO_1677 -96 5.9 CTTTACGTTCGCGTAAAC
Shewanella putrefaciens CN-32 Sputcn32_1397 -104 5.9 CTTTACGTTCGCGTAAAC
Shewanella sp W3-18-1 Sputw3181_2704 -104 5.9 CTTTACGTTCGCGTAAAC
Shewanella sp ANA-3 Shewana3_2771 -96 5.9 CTTTACGTTCGCGTAAAC
Shewanella sp MR-4 Shewmr4_2597 -96 5.9 CTTTACGTTCGCGTAAAC
Shewanella sp MR-7 Shewmr7_2664 -96 5.9 CTTTACGTTCGCGTAAAC
Shewanella baltica OS155 Sbal_1495 -100 5.9 CTTTACGTTCGCGTAAAC
Shewanella denitrificans OS217 Sden_1943 -97 6.2 CTTTACGTTAGCGTAAAC
Shewanella frigidimarina NCIMB 400 Sfri_1338 -78 5.6 CTTTACGTTCGCGTCAAC
Shewanella amazonensis SB2B Sama_1375 -110 5.9 CTTTACGTTCGCGTAAAC
Shewanella loihica PV-4 Shew_1667 -105 5.9 CTTTACGTTCGCGTAAAC
Shewanella pealeana ATCC 700345 Spea_2783 -168 5.9 CTTTACGTTCGCGTAAAC
Shewanella halifaxensis HAW-EB4 Shal_2878 -168 5.9 CTTTACGTTCGCGTAAAC
Shewanella piezotolerans WP3 swp_3387 -206 5.9 CTTTACGTTCGCGTAAAC
Shewanella sediminis HAW-EB3 Ssed_1473 -122 5.9 CTTTACGTTCGCGTAAAC
Shewanella woodyi ATCC 51908 Swoo_3202 -110 5.9 CTTTACGTTCGCGTAAAC