Propagation of Fnr regulog to Shewanella violacea DSS12
| Source regulog: | Fnr - Shewanellaceae |
| Regulator type: | Transcription factor |
| Regulator family: | CRP |
| Regulation mode: | |
| Biological process: | Anaerobic metabolism |
| Effector: | Oxygen |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Shewanella violacea DSS12 |
| Orthologous TF(s) | SVI_2163 |
| Regulated genes | 20 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -333
Score: 4.9 Sequence: GTGATCTTGATCAA
Locus tag: SVI_0191
|
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| SVI_0191 | -333 | 4.9 | GTGATCTTGATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: coxB | ||||
| Ortholog function: Cytochrome c oxidase, polypeptide II (EC 1.9.3.1) | ||||
| Shewanella amazonensis SB2B | Sama_3483 | -314 | 4.9 | GTGATCTTGATCAA |
| Shewanella baltica OS155 | Sbal_0154 | -313 | 4.9 | GTGATCTTGATCAA |
| Shewanella denitrificans OS217 | Sden_3517 | -312 | 4.9 | GTGATCTTGATCAA |
| Shewanella frigidimarina NCIMB 400 | Sfri_0258 | -317 | 4.9 | GTGATCTTGATCAA |
| -209 | 4.8 | ATGATCCAAATCAA | ||
| Shewanella halifaxensis HAW-EB4 | Shal_0258 | -372 | 4.9 | GTGATCTTGATCAA |
| Shewanella loihica PV-4 | Shew_0125 | -317 | 4.9 | GTGATCTTGATCAA |
| Shewanella oneidensis MR-1 | SO4606 | -313 | 4.9 | GTGATCTTGATCAA |
| Shewanella pealeana ATCC 700345 | Spea_3999 | -349 | 4.9 | GTGATCTTGATCAA |
| -246 | 4.2 | TAGATCCTGATCAA | ||
| Shewanella piezotolerans WP3 | swp_4823 | -366 | 4.9 | GTGATCTTGATCAA |
| Shewanella putrefaciens CN-32 | Sputcn32_3782 | -305 | 4.9 | GTGATCTTGATCAA |
| Shewanella sediminis HAW-EB3 | Ssed_0198 | -339 | 5.2 | TTGATCTTGATCAA |
| Shewanella sp ANA-3 | Shewana3_3991 | -314 | 4.9 | GTGATCTTGATCAA |
| Shewanella sp MR-4 | Shewmr4_3791 | -314 | 4.9 | GTGATCTTGATCAA |
| Shewanella sp MR-7 | Shewmr7_3864 | -313 | 4.9 | GTGATCTTGATCAA |
| Shewanella sp W3-18-1 | Sputw3181_0133 | -305 | 4.9 | GTGATCTTGATCAA |
| Shewanella woodyi ATCC 51908 | Swoo_0178 | -337 | 4.9 | GTGATCTTGATCAA |
|
Position: -138
Score: 4.6 Sequence: GTGATCTGGTTCAA
Locus tag: SVI_0271
|
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| SVI_0271 | -138 | 4.6 | GTGATCTGGTTCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: acnB | ||||
| Ortholog function: Aconitate hydratase 2 (EC 4.2.1.3) / 2-methylisocitrate dehydratase (EC 4.2.1.99) | ||||
| Shewanella halifaxensis HAW-EB4 | Shal_0482 | -243 | 4.3 | ATAATTTAGATCAA |
| Shewanella loihica PV-4 | Shew_3424 | -136 | 4.1 | GTGATCTGATTCAT |
| Shewanella pealeana ATCC 700345 | Spea_0425 | -264 | 4.3 | ATAATTTAGATCAA |
| Shewanella piezotolerans WP3 | swp_4740 | -135 | 4.1 | GTGATCTGATTCAT |
| Shewanella sediminis HAW-EB3 | Ssed_0438 | -137 | 4.3 | GTGATCTGATTCAA |
| Shewanella woodyi ATCC 51908 | Swoo_0285 | -135 | 4.3 | GTGATCTGATTCAA |
|
Position: -125
Score: 5 Sequence: TTGATCTAGCGCAA
Locus tag: SVI_0526
|
||||
| SVI_0526 | -125 | 5 | TTGATCTAGCGCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cydD | ||||
| Ortholog function: Transport ATP-binding protein CydD | ||||
| Shewanella amazonensis SB2B | Sama_2679 | -133 | 4.7 | TTGATCCAGCGCAA |
| Shewanella denitrificans OS217 | Sden_0860 | -222 | 4.4 | CTGAGCTAAATCAA |
| Shewanella halifaxensis HAW-EB4 | Shal_3589 | -229 | 5.3 | TTGATCTAGCTCAA |
| Shewanella loihica PV-4 | Shew_0613 | -125 | 5.3 | TTGATCTAGCTCAA |
| Shewanella pealeana ATCC 700345 | Spea_3494 | -181 | 5.3 | TTGATCTAGCTCAA |
| Shewanella sediminis HAW-EB3 | Ssed_3849 | -135 | 5.3 | TTGATCTAGCTCAA |
| Shewanella woodyi ATCC 51908 | Swoo_0710 | -145 | 5.3 | TTGATCTAGCTCAA |
|
Position: -116
Score: 4.8 Sequence: TTGATCTAGCGCAT
Locus tag: SVI_0962
|
||||
| SVI_0962 | -116 | 4.8 | TTGATCTAGCGCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hcp | ||||
| Ortholog function: Hydroxylamine reductase (EC 1.7.-.-) | ||||
| Shewanella amazonensis SB2B | Sama_0895 | -109 | 4.5 | ATGATCTGCTTCAA |
| Shewanella frigidimarina NCIMB 400 | Sfri_3609 | -121 | 4.5 | GTGATGTGGCTCAT |
| Shewanella loihica PV-4 | Shew_1069 | -121 | 4.1 | TTGATCCGCTTCAT |
| Shewanella sediminis HAW-EB3 | Ssed_1165 | -120 | 4.4 | TTGATCTACTTCAT |
| Shewanella woodyi ATCC 51908 | Swoo_1260 | -121 | 4.7 | TTGATCTGTCTCAA |
|
Position: -128
Score: 4.6 Sequence: TTGATCTGCATCAC
Position: -78
Score: 4.5 Sequence: TTGTTTTAGATCAA
Locus tag: SVI_1207
|
||||
| SVI_1207 | -128 | 4.6 | TTGATCTGCATCAC | |
| -78 | 4.5 | TTGTTTTAGATCAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Shew_2655 | ||||
| Ortholog function: Conserved hypothetical protein | ||||
| Shewanella halifaxensis HAW-EB4 | Shal_3305 | -79 | 4.5 | TTGTTTTAGATCAA |
| Shewanella loihica PV-4 | Shew_2655 | -80 | 4.5 | TTGTTTTAGATCAA |
| Shewanella pealeana ATCC 700345 | Spea_3233 | -79 | 4.5 | TTGTTTTAGATCAA |
| Shewanella piezotolerans WP3 | swp_1107 | -128 | 4.1 | ATGATCTTGCTCAC |
| -79 | 4.8 | TTGTTCTGGATCAA | ||
| Shewanella sediminis HAW-EB3 | Ssed_3185 | -139 | 4.2 | TTGATCTTAATCAC |
| -90 | 4.2 | TTGTTTCAGATCAA | ||
| Shewanella woodyi ATCC 51908 | Swoo_3303 | -78 | 4.5 | TTGTTCCAGATCAA |
|
Position: -332
Score: 4.9 Sequence: TTGATTTGAATCAA
Position: -51
Score: 4.4 Sequence: TTGATGGGGATCTA
Locus tag: SVI_1388
|
||||
| SVI_1388 | -332 | 4.9 | TTGATTTGAATCAA | |
| -51 | 4.4 | TTGATGGGGATCTA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cydA | ||||
| Ortholog function: Cytochrome d ubiquinol oxidase, subunit I (EC 1.10.3.-) | ||||
| Shewanella amazonensis SB2B | Sama_2349 | -334 | 4.3 | TTGATTTACGTCAA |
| Shewanella baltica OS155 | Sbal_2979 | -342 | 4.9 | TTGATTTGCATCAA |
| Shewanella denitrificans OS217 | Sden_1274 | -153 | 5.3 | TTGATCTAAATCAA |
| Shewanella frigidimarina NCIMB 400 | Sfri_1142 | -338 | 4.2 | ATGATTGTGATCAA |
| Shewanella halifaxensis HAW-EB4 | Shal_1381 | -336 | 4.9 | TTGATTTGAATCAA |
| -51 | 4.4 | TTGATGGGGATCTA | ||
| Shewanella loihica PV-4 | Shew_1302 | -341 | 4.9 | TTGATTTGAATCAA |
| -51 | 4.4 | TTGATGGGGATCTA | ||
| Shewanella oneidensis MR-1 | SO3286 | -338 | 4.9 | TTGATTTGAATCAA |
| Shewanella pealeana ATCC 700345 | Spea_1318 | -337 | 4.9 | TTGATTTGAATCAA |
| -51 | 4.4 | TTGATGGGGATCTA | ||
| Shewanella piezotolerans WP3 | swp_1469 | -332 | 4.9 | TTGATTTGAATCAA |
| -51 | 4.4 | TTGATGGGGATCTA | ||
| Shewanella putrefaciens CN-32 | Sputcn32_2641 | -339 | 4.9 | TTGATTTGAATCAA |
| Shewanella sediminis HAW-EB3 | Ssed_3118 | -336 | 4.9 | TTGATTTGAATCAA |
| Shewanella sp ANA-3 | Shewana3_1241 | -338 | 4.9 | TTGATTTGAATCAA |
| Shewanella sp MR-4 | Shewmr4_1239 | -338 | 4.9 | TTGATTTGAATCAA |
| Shewanella sp MR-7 | Shewmr7_1310 | -338 | 4.9 | TTGATTTGAATCAA |
| Shewanella sp W3-18-1 | Sputw3181_1366 | -339 | 4.9 | TTGATTTGAATCAA |
| Shewanella woodyi ATCC 51908 | Swoo_1565 | -334 | 4.9 | TTGATTTGAATCAA |
| -51 | 4.2 | ATGATGGGGATCTA | ||
|
Position: -216
Score: 5.6 Sequence: TTGATCTAGATCAA
Locus tag: SVI_2171
|
||||
| SVI_2171 | -216 | 5.6 | TTGATCTAGATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ccoN | ||||
| Ortholog function: Cytochrome c oxidase, cbb3-type, subunit CcoN (EC 1.9.3.1) | ||||
| Shewanella amazonensis SB2B | Sama_1791 | -218 | 5.3 | TTGATCCAGATCAA |
| Shewanella baltica OS155 | Sbal_2201 | -212 | 5.6 | TTGATCTAGATCAA |
| -169 | 4.5 | TTGATATTGCTCAA | ||
| Shewanella baltica OS155 | Sbal_4487 | -212 | 5.6 | TTGATCTAGATCAA |
| -169 | 4.5 | TTGATATTGCTCAA | ||
| Shewanella denitrificans OS217 | Sden_1851 | -220 | 5.3 | TTGATCCAGATCAA |
| -178 | 5.1 | TTGATGTAGCTCAA | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_2010 | -224 | 5.6 | TTGATCTAGATCAA |
| -182 | 4.3 | TTGACTTAGCTCAA | ||
| Shewanella halifaxensis HAW-EB4 | Shal_2197 | -217 | 5.6 | TTGATCTAGATCAA |
| -174 | 4.9 | TTGATATAGCTCAA | ||
| Shewanella loihica PV-4 | Shew_1985 | -217 | 5.6 | TTGATCTGGATCAA |
| -174 | 4.5 | TTGATATTGCTCAA | ||
| Shewanella oneidensis MR-1 | SO2364 | -212 | 5.6 | TTGATCTAGATCAA |
| -169 | 4.2 | TTGACATGGCTCAA | ||
| -106 | 4.3 | TTGACATAGCTCAA | ||
| Shewanella pealeana ATCC 700345 | Spea_2214 | -215 | 5.6 | TTGATCTAGATCAA |
| -172 | 4.9 | TTGATATAGCTCAA | ||
| Shewanella piezotolerans WP3 | swp_2572 | -217 | 5.6 | TTGATCTAGATCAA |
| -174 | 4.3 | TTGACATAGCTCAA | ||
| Shewanella putrefaciens CN-32 | Sputcn32_1959 | -210 | 5.6 | TTGATCTAGATCAA |
| -167 | 3.9 | TTGACATTGCTCAA | ||
| Shewanella sediminis HAW-EB3 | Ssed_2211 | -216 | 5.6 | TTGATCTAGATCAA |
| -173 | 4.3 | TTGACATAGCTCAA | ||
| Shewanella sp ANA-3 | Shewana3_2107 | -210 | 5.6 | TTGATCTAGATCAA |
| -167 | 4.2 | TTGACATGGCTCAA | ||
| Shewanella sp MR-4 | Shewmr4_2006 | -210 | 5.6 | TTGATCTAGATCAA |
| -167 | 4.2 | TTGACATGGCTCAA | ||
| Shewanella sp MR-7 | Shewmr7_1969 | -210 | 5.6 | TTGATCTAGATCAA |
| -167 | 4.2 | TTGACATGGCTCAA | ||
| Shewanella sp W3-18-1 | Sputw3181_2046 | -210 | 5.6 | TTGATCTAGATCAA |
| -167 | 3.9 | TTGACATTGCTCAA | ||
| Shewanella woodyi ATCC 51908 | Swoo_2425 | -216 | 5.6 | TTGATCTAGATCAA |
| -173 | 4.3 | TTGACATAGCTCAA | ||
|
Position: -95
Score: 4.7 Sequence: TTGTTCTAGATCAT
Locus tag: SVI_2319
|
||||
| SVI_2319 | -95 | 4.7 | TTGTTCTAGATCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pykA | ||||
| Ortholog function: Pyruvate kinase (EC 2.7.1.40) | ||||
| Shewanella amazonensis SB2B | Sama_1814 | -96 | 4.7 | TTGAGATAGATCAT |
| Shewanella halifaxensis HAW-EB4 | Shal_1947 | -95 | 4.7 | TTGAGTTAGATCAT |
| Shewanella loihica PV-4 | Shew_2050 | -94 | 4.7 | TTGAGATAGATCAT |
| Shewanella pealeana ATCC 700345 | Spea_2337 | -95 | 4.7 | TTGAGTTAGATCAT |
| Shewanella piezotolerans WP3 | swp_2388 | -95 | 4.7 | TTGAGATAGATCAT |
| Shewanella sediminis HAW-EB3 | Ssed_2068 | -95 | 4.7 | TTGCGCTAGATCAT |
| Shewanella woodyi ATCC 51908 | Swoo_2541 | -95 | 4.7 | TTGCGCTAGATCAT |
|
Position: -339
Score: 5.1 Sequence: ATGATCCAGATCAA
Locus tag: SVI_2425
|
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| SVI_2425 | -339 | 5.1 | ATGATCCAGATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: napD2 | ||||
| Ortholog function: Periplasmic nitrate reductase component NapD | ||||
| Shewanella sediminis HAW-EB3 | Ssed_1912 | -275 | 5.2 | TTGATCTGCATCAA |
| -245 | 4.4 | GTGATGCGAATCAA | ||
|
Position: -122
Score: 5 Sequence: ATGATCTCGATCAA
Locus tag: SVI_2930
|
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| SVI_2930 | -122 | 5 | ATGATCTCGATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nrdD | ||||
| Ortholog function: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) | ||||
| Shewanella amazonensis SB2B | Sama_1275 | -114 | 4.6 | ATGATCCATATCAA |
| Shewanella baltica OS155 | Sbal_1665 | -122 | 5.2 | ATGATCTGGATCAT |
| Shewanella denitrificans OS217 | Sden_1419 | -166 | 5.5 | ATGATCTAGATCAA |
| Shewanella frigidimarina NCIMB 400 | Sfri_2443 | -106 | 5.4 | ATGATCTGGATCAA |
| Shewanella halifaxensis HAW-EB4 | Shal_2692 | -123 | 5.4 | ATGATCTGGATCAA |
| Shewanella loihica PV-4 | Shew_2449 | -122 | 5.4 | ATGATCTGGATCAA |
| Shewanella oneidensis MR-1 | SO2834 | -269 | 4 | TTGATTTTAAGCAT |
| -121 | 5.2 | ATGATCTGGATCAT | ||
| Shewanella pealeana ATCC 700345 | Spea_2619 | -123 | 5.4 | ATGATCTGGATCAA |
| Shewanella piezotolerans WP3 | swp_3165 | -122 | 5.4 | ATGATCTGGATCAA |
| -62 | 3.8 | TTGATTTAAAGTAA | ||
| Shewanella putrefaciens CN-32 | Sputcn32_1540 | -203 | 3.9 | ATGACTTAGGTCAA |
| -121 | 5.2 | ATGATCTGGATCAT | ||
| Shewanella sediminis HAW-EB3 | Ssed_1600 | -122 | 5 | ATGATCGAGATCAA |
| Shewanella sp ANA-3 | Shewana3_2603 | -121 | 5.2 | ATGATCTGGATCAT |
| Shewanella sp MR-4 | Shewmr4_2441 | -121 | 5.2 | ATGATCTGGATCAT |
| Shewanella sp MR-7 | Shewmr7_2511 | -121 | 5.2 | ATGATCTGGATCAT |
| Shewanella sp W3-18-1 | Sputw3181_2559 | -203 | 3.9 | ATGACTTAGGTCAA |
| -121 | 5.2 | ATGATCTGGATCAT | ||
| Shewanella woodyi ATCC 51908 | Swoo_3049 | -122 | 4.8 | ATGATCAGGATCAA |
|
Position: -91
Score: 4.3 Sequence: TTGATCTAGGTAAA
Locus tag: SVI_3008
|
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| SVI_3008 | -91 | 4.3 | TTGATCTAGGTAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: feoA | ||||
| Ortholog function: Ferrous iron transport protein A | ||||
| Shewanella baltica OS155 | Sbal_1594 | -272 | 4 | GTGATGTTGATCAC |
| -87 | 4.3 | TTGATCTAGGTAAA | ||
| Shewanella halifaxensis HAW-EB4 | Shal_2777 | -275 | 4.1 | GTGATCTGTGTCAA |
| -92 | 4.3 | TTGATCTAGGTAAA | ||
| Shewanella loihica PV-4 | Shew_2518 | -241 | 4.6 | GTGATCTAGATCAC |
| -89 | 4.9 | TTGATCTAGATAAA | ||
| Shewanella oneidensis MR-1 | SO1783 | -87 | 4.3 | TTGATCTAGGTAAA |
| Shewanella pealeana ATCC 700345 | Spea_2691 | -92 | 4.3 | TTGATCTAGGTAAA |
| Shewanella piezotolerans WP3 | swp_3271 | -91 | 4.9 | TTGATCTAGATAAA |
| Shewanella putrefaciens CN-32 | Sputcn32_1480 | -89 | 4.3 | TTGATCTAGGTAAA |
| Shewanella sediminis HAW-EB3 | Ssed_1531 | -92 | 4.3 | TTGATCTAGGTAAA |
| Shewanella sp ANA-3 | Shewana3_2671 | -87 | 4.3 | TTGATCTAGGTAAA |
| Shewanella sp MR-4 | Shewmr4_2505 | -87 | 4.3 | TTGATCTAGGTAAA |
| Shewanella sp MR-7 | Shewmr7_2573 | -87 | 4.3 | TTGATCTAGGTAAA |
| Shewanella sp W3-18-1 | Sputw3181_2621 | -89 | 4.3 | TTGATCTAGGTAAA |
|
Position: -107
Score: 5.2 Sequence: TTGATTTGGATCAA
Locus tag: SVI_3111
|
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| SVI_3111 | -107 | 5.2 | TTGATTTGGATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ompW | ||||
| Ortholog function: Outer membrane protein W precursor | ||||
| Shewanella amazonensis SB2B | Sama_1371 | -105 | 5.2 | TTGATTTGGATCAA |
| Shewanella baltica OS155 | Sbal_1490 | -103 | 5.2 | TTGATTTGGATCAA |
| Shewanella denitrificans OS217 | Sden_2589 | -153 | 4.5 | GTGAATTAGATCAA |
| -103 | 5.3 | TTGATCCAGATCAA | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_1334 | -166 | 4.6 | GTGATCCAAATCAA |
| -105 | 5.3 | TTGATCTAAATCAA | ||
| Shewanella halifaxensis HAW-EB4 | Shal_2887 | -107 | 4.4 | TTGATTCAGGTCAA |
| Shewanella oneidensis MR-1 | SO1673 | -293 | 4.3 | TTGATGTAAATGAA |
| -106 | 5.2 | TTGATTTGGATCAA | ||
| Shewanella pealeana ATCC 700345 | Spea_2787 | -155 | 4.3 | GTGATCTAGATCCT |
| -104 | 5.3 | TTGATTTAGATCAA | ||
| Shewanella piezotolerans WP3 | swp_3395 | -107 | 5.6 | TTGATCTAGATCAA |
| Shewanella putrefaciens CN-32 | Sputcn32_1392 | -103 | 5.3 | TTGATTTAGATCAA |
| Shewanella sediminis HAW-EB3 | Ssed_1469 | -154 | 3.8 | GTGAGCTTGGTCAT |
| -104 | 5.6 | TTGATCTGGATCAA | ||
| Shewanella sp ANA-3 | Shewana3_2775 | -103 | 5.2 | TTGATTTGGATCAA |
| Shewanella sp MR-4 | Shewmr4_2601 | -103 | 5.2 | TTGATTTGGATCAA |
| Shewanella sp MR-7 | Shewmr7_2668 | -103 | 5.2 | TTGATTTGGATCAA |
| Shewanella sp W3-18-1 | Sputw3181_2709 | -103 | 5.3 | TTGATTTAGATCAA |
| Shewanella woodyi ATCC 51908 | Swoo_3207 | -154 | 4.1 | GTGAGTTCGATCAA |
| -104 | 5.2 | TTGATTTGGATCAA | ||
|
Position: -85
Score: 4.4 Sequence: TTGATCGAGATCAG
Locus tag: SVI_3697
|
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| SVI_3697 | -85 | 4.4 | TTGATCGAGATCAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Sama_0549 | ||||
| Ortholog function: Conserved hypothetical protein | ||||
| Shewanella amazonensis SB2B | Sama_0549 | -135 | 4.6 | TTGATTCACATCAA |
| -75 | 4.3 | TTGATCAAGATCAG | ||
| Shewanella baltica OS155 | Sbal_3565 | -75 | 4.3 | TTGATCAAGATCAG |
| Shewanella frigidimarina NCIMB 400 | Sfri_0507 | -75 | 4.3 | TTGATCAAGATCAG |
| Shewanella halifaxensis HAW-EB4 | Shal_0680 | -75 | 4 | TTGACTAAGATCAA |
| Shewanella loihica PV-4 | Shew_3247 | -87 | 4.4 | TTGATCGAGATCAG |
| Shewanella pealeana ATCC 700345 | Spea_0593 | -138 | 4.2 | ATGATCTACAACAT |
| -78 | 4.2 | TTGACTGAGATCAA | ||
| Shewanella piezotolerans WP3 | swp_4510 | 0 | 4.4 | TTGACCAAGATCAA |
| Shewanella putrefaciens CN-32 | Sputcn32_0777 | -75 | 4.2 | TTGATCAGGATCAG |
| Shewanella sediminis HAW-EB3 | Ssed_4003 | -244 | 4.2 | TTTATCTAGATCAC |
| -87 | 4.4 | TTGATCGAGATCAG | ||
| Shewanella sp ANA-3 | Shewana3_0738 | -75 | 4.2 | TTGATCAGGATCAG |
| Shewanella sp W3-18-1 | Sputw3181_3398 | -75 | 4.2 | TTGATCAGGATCAG |
| Shewanella woodyi ATCC 51908 | Swoo_4146 | -77 | 4.4 | TTGATCGAGATCAG |
|
Position: -237
Score: 4.7 Sequence: TTGATTTAGGTCAA
Locus tag: SVI_3704
|
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| SVI_3704 | -237 | 4.7 | TTGATTTAGGTCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO0579 | ||||
| Ortholog function: Predicted serine/threonine protein kinase | ||||
| Shewanella amazonensis SB2B | Sama_0541 | -118 | 4.9 | TTGATTTGCATCAA |
| Shewanella baltica OS155 | Sbal_0539 | -154 | 4.5 | TTGATGTAAGTCAA |
| Shewanella denitrificans OS217 | Sden_0539 | -87 | 4.5 | TTGATGCAGGTCAA |
| Shewanella frigidimarina NCIMB 400 | Sfri_3500 | -226 | 4.6 | TTGATATAGGTCAA |
| Shewanella halifaxensis HAW-EB4 | Shal_0673 | -123 | 4.8 | TTGATGTGTATCAA |
| Shewanella loihica PV-4 | Shew_3263 | -124 | 4.6 | TTGATATAGGTCAA |
| Shewanella oneidensis MR-1 | SO0579 | -145 | 4.9 | TTGATATAAATCAA |
| Shewanella pealeana ATCC 700345 | Spea_0586 | -123 | 4.8 | TTGATATGCATCAA |
| Shewanella piezotolerans WP3 | swp_4517 | -140 | 4.9 | TTGATATACATCAA |
| Shewanella putrefaciens CN-32 | Sputcn32_3298 | -152 | 4.3 | TTGATATAAGTCAA |
| Shewanella sediminis HAW-EB3 | Ssed_4012 | -185 | 4.6 | TTGATATAGGTCAA |
| Shewanella sp ANA-3 | Shewana3_0578 | -152 | 4.9 | TTGATATAAATCAA |
| Shewanella sp MR-4 | Shewmr4_0579 | -154 | 4.9 | TTGATATAAATCAA |
| Shewanella sp MR-7 | Shewmr7_3451 | -154 | 4.9 | TTGATATAAATCAA |
| Shewanella sp W3-18-1 | Sputw3181_0643 | -152 | 4.3 | TTGATATAAGTCAA |
| Shewanella woodyi ATCC 51908 | Swoo_4155 | -226 | 4.8 | TTGATGTAGGTCAA |
|
Position: -114
Score: 4.7 Sequence: GTGATCTTGATCAT
Locus tag: SVI_3764
|
||||
| SVI_3764 | -114 | 4.7 | GTGATCTTGATCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nifS | ||||
| Ortholog function: Cysteine desulfurase (EC 2.8.1.7) | ||||
| Shewanella loihica PV-4 | Shew_3354 | -113 | 5.1 | ATGATCTTGATCAA |
| Shewanella pealeana ATCC 700345 | Spea_0544 | -113 | 4.7 | GTGATCTTGATCAT |
| Shewanella piezotolerans WP3 | swp_4605 | -106 | 4.7 | GTGATCTTGATCAT |
| Shewanella woodyi ATCC 51908 | Swoo_0566 | -101 | 4.7 | GTGATCTTGATCAT |