Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of Fnr regulog to Shewanella violacea DSS12

Reference regulog properties
Source regulog: Fnr - Shewanellaceae
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode:
Biological process: Anaerobic metabolism
Effector: Oxygen
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Shewanella violacea DSS12
Orthologous TF(s) SVI_2163
Regulated genes 20
Built upon 541 sites [see more]
Predicted regulatory interactions in Shewanella violacea DSS12
Locus tag Position Score Sequence
Position: -333
Score: 4.9
Sequence: GTGATCTTGATCAA
Locus tag: SVI_0191
SVI_0191 -333 4.9 GTGATCTTGATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: coxB
Ortholog function: Cytochrome c oxidase, polypeptide II (EC 1.9.3.1)
Shewanella amazonensis SB2B Sama_3483 -314 4.9 GTGATCTTGATCAA
Shewanella baltica OS155 Sbal_0154 -313 4.9 GTGATCTTGATCAA
Shewanella denitrificans OS217 Sden_3517 -312 4.9 GTGATCTTGATCAA
Shewanella frigidimarina NCIMB 400 Sfri_0258 -317 4.9 GTGATCTTGATCAA
-209 4.8 ATGATCCAAATCAA
Shewanella halifaxensis HAW-EB4 Shal_0258 -372 4.9 GTGATCTTGATCAA
Shewanella loihica PV-4 Shew_0125 -317 4.9 GTGATCTTGATCAA
Shewanella oneidensis MR-1 SO4606 -313 4.9 GTGATCTTGATCAA
Shewanella pealeana ATCC 700345 Spea_3999 -349 4.9 GTGATCTTGATCAA
-246 4.2 TAGATCCTGATCAA
Shewanella piezotolerans WP3 swp_4823 -366 4.9 GTGATCTTGATCAA
Shewanella putrefaciens CN-32 Sputcn32_3782 -305 4.9 GTGATCTTGATCAA
Shewanella sediminis HAW-EB3 Ssed_0198 -339 5.2 TTGATCTTGATCAA
Shewanella sp ANA-3 Shewana3_3991 -314 4.9 GTGATCTTGATCAA
Shewanella sp MR-4 Shewmr4_3791 -314 4.9 GTGATCTTGATCAA
Shewanella sp MR-7 Shewmr7_3864 -313 4.9 GTGATCTTGATCAA
Shewanella sp W3-18-1 Sputw3181_0133 -305 4.9 GTGATCTTGATCAA
Shewanella woodyi ATCC 51908 Swoo_0178 -337 4.9 GTGATCTTGATCAA
Position: -138
Score: 4.6
Sequence: GTGATCTGGTTCAA
Locus tag: SVI_0271
SVI_0271 -138 4.6 GTGATCTGGTTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: acnB
Ortholog function: Aconitate hydratase 2 (EC 4.2.1.3) / 2-methylisocitrate dehydratase (EC 4.2.1.99)
Shewanella halifaxensis HAW-EB4 Shal_0482 -243 4.3 ATAATTTAGATCAA
Shewanella loihica PV-4 Shew_3424 -136 4.1 GTGATCTGATTCAT
Shewanella pealeana ATCC 700345 Spea_0425 -264 4.3 ATAATTTAGATCAA
Shewanella piezotolerans WP3 swp_4740 -135 4.1 GTGATCTGATTCAT
Shewanella sediminis HAW-EB3 Ssed_0438 -137 4.3 GTGATCTGATTCAA
Shewanella woodyi ATCC 51908 Swoo_0285 -135 4.3 GTGATCTGATTCAA
Position: -125
Score: 5
Sequence: TTGATCTAGCGCAA
Locus tag: SVI_0526
SVI_0526 -125 5 TTGATCTAGCGCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cydD
Ortholog function: Transport ATP-binding protein CydD
Shewanella amazonensis SB2B Sama_2679 -133 4.7 TTGATCCAGCGCAA
Shewanella denitrificans OS217 Sden_0860 -222 4.4 CTGAGCTAAATCAA
Shewanella halifaxensis HAW-EB4 Shal_3589 -229 5.3 TTGATCTAGCTCAA
Shewanella loihica PV-4 Shew_0613 -125 5.3 TTGATCTAGCTCAA
Shewanella pealeana ATCC 700345 Spea_3494 -181 5.3 TTGATCTAGCTCAA
Shewanella sediminis HAW-EB3 Ssed_3849 -135 5.3 TTGATCTAGCTCAA
Shewanella woodyi ATCC 51908 Swoo_0710 -145 5.3 TTGATCTAGCTCAA
Position: -116
Score: 4.8
Sequence: TTGATCTAGCGCAT
Locus tag: SVI_0962
SVI_0962 -116 4.8 TTGATCTAGCGCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hcp
Ortholog function: Hydroxylamine reductase (EC 1.7.-.-)
Shewanella amazonensis SB2B Sama_0895 -109 4.5 ATGATCTGCTTCAA
Shewanella frigidimarina NCIMB 400 Sfri_3609 -121 4.5 GTGATGTGGCTCAT
Shewanella loihica PV-4 Shew_1069 -121 4.1 TTGATCCGCTTCAT
Shewanella sediminis HAW-EB3 Ssed_1165 -120 4.4 TTGATCTACTTCAT
Shewanella woodyi ATCC 51908 Swoo_1260 -121 4.7 TTGATCTGTCTCAA
Position: -128
Score: 4.6
Sequence: TTGATCTGCATCAC
Position: -78
Score: 4.5
Sequence: TTGTTTTAGATCAA
Locus tag: SVI_1207
SVI_1207 -128 4.6 TTGATCTGCATCAC
-78 4.5 TTGTTTTAGATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: Shew_2655
Ortholog function: Conserved hypothetical protein
Shewanella halifaxensis HAW-EB4 Shal_3305 -79 4.5 TTGTTTTAGATCAA
Shewanella loihica PV-4 Shew_2655 -80 4.5 TTGTTTTAGATCAA
Shewanella pealeana ATCC 700345 Spea_3233 -79 4.5 TTGTTTTAGATCAA
Shewanella piezotolerans WP3 swp_1107 -128 4.1 ATGATCTTGCTCAC
-79 4.8 TTGTTCTGGATCAA
Shewanella sediminis HAW-EB3 Ssed_3185 -139 4.2 TTGATCTTAATCAC
-90 4.2 TTGTTTCAGATCAA
Shewanella woodyi ATCC 51908 Swoo_3303 -78 4.5 TTGTTCCAGATCAA
Position: -332
Score: 4.9
Sequence: TTGATTTGAATCAA
Position: -51
Score: 4.4
Sequence: TTGATGGGGATCTA
Locus tag: SVI_1388
SVI_1388 -332 4.9 TTGATTTGAATCAA
-51 4.4 TTGATGGGGATCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cydA
Ortholog function: Cytochrome d ubiquinol oxidase, subunit I (EC 1.10.3.-)
Shewanella amazonensis SB2B Sama_2349 -334 4.3 TTGATTTACGTCAA
Shewanella baltica OS155 Sbal_2979 -342 4.9 TTGATTTGCATCAA
Shewanella denitrificans OS217 Sden_1274 -153 5.3 TTGATCTAAATCAA
Shewanella frigidimarina NCIMB 400 Sfri_1142 -338 4.2 ATGATTGTGATCAA
Shewanella halifaxensis HAW-EB4 Shal_1381 -336 4.9 TTGATTTGAATCAA
-51 4.4 TTGATGGGGATCTA
Shewanella loihica PV-4 Shew_1302 -341 4.9 TTGATTTGAATCAA
-51 4.4 TTGATGGGGATCTA
Shewanella oneidensis MR-1 SO3286 -338 4.9 TTGATTTGAATCAA
Shewanella pealeana ATCC 700345 Spea_1318 -337 4.9 TTGATTTGAATCAA
-51 4.4 TTGATGGGGATCTA
Shewanella piezotolerans WP3 swp_1469 -332 4.9 TTGATTTGAATCAA
-51 4.4 TTGATGGGGATCTA
Shewanella putrefaciens CN-32 Sputcn32_2641 -339 4.9 TTGATTTGAATCAA
Shewanella sediminis HAW-EB3 Ssed_3118 -336 4.9 TTGATTTGAATCAA
Shewanella sp ANA-3 Shewana3_1241 -338 4.9 TTGATTTGAATCAA
Shewanella sp MR-4 Shewmr4_1239 -338 4.9 TTGATTTGAATCAA
Shewanella sp MR-7 Shewmr7_1310 -338 4.9 TTGATTTGAATCAA
Shewanella sp W3-18-1 Sputw3181_1366 -339 4.9 TTGATTTGAATCAA
Shewanella woodyi ATCC 51908 Swoo_1565 -334 4.9 TTGATTTGAATCAA
-51 4.2 ATGATGGGGATCTA
Position: -216
Score: 5.6
Sequence: TTGATCTAGATCAA
Locus tag: SVI_2171
SVI_2171 -216 5.6 TTGATCTAGATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ccoN
Ortholog function: Cytochrome c oxidase, cbb3-type, subunit CcoN (EC 1.9.3.1)
Shewanella amazonensis SB2B Sama_1791 -218 5.3 TTGATCCAGATCAA
Shewanella baltica OS155 Sbal_2201 -212 5.6 TTGATCTAGATCAA
-169 4.5 TTGATATTGCTCAA
Shewanella baltica OS155 Sbal_4487 -212 5.6 TTGATCTAGATCAA
-169 4.5 TTGATATTGCTCAA
Shewanella denitrificans OS217 Sden_1851 -220 5.3 TTGATCCAGATCAA
-178 5.1 TTGATGTAGCTCAA
Shewanella frigidimarina NCIMB 400 Sfri_2010 -224 5.6 TTGATCTAGATCAA
-182 4.3 TTGACTTAGCTCAA
Shewanella halifaxensis HAW-EB4 Shal_2197 -217 5.6 TTGATCTAGATCAA
-174 4.9 TTGATATAGCTCAA
Shewanella loihica PV-4 Shew_1985 -217 5.6 TTGATCTGGATCAA
-174 4.5 TTGATATTGCTCAA
Shewanella oneidensis MR-1 SO2364 -212 5.6 TTGATCTAGATCAA
-169 4.2 TTGACATGGCTCAA
-106 4.3 TTGACATAGCTCAA
Shewanella pealeana ATCC 700345 Spea_2214 -215 5.6 TTGATCTAGATCAA
-172 4.9 TTGATATAGCTCAA
Shewanella piezotolerans WP3 swp_2572 -217 5.6 TTGATCTAGATCAA
-174 4.3 TTGACATAGCTCAA
Shewanella putrefaciens CN-32 Sputcn32_1959 -210 5.6 TTGATCTAGATCAA
-167 3.9 TTGACATTGCTCAA
Shewanella sediminis HAW-EB3 Ssed_2211 -216 5.6 TTGATCTAGATCAA
-173 4.3 TTGACATAGCTCAA
Shewanella sp ANA-3 Shewana3_2107 -210 5.6 TTGATCTAGATCAA
-167 4.2 TTGACATGGCTCAA
Shewanella sp MR-4 Shewmr4_2006 -210 5.6 TTGATCTAGATCAA
-167 4.2 TTGACATGGCTCAA
Shewanella sp MR-7 Shewmr7_1969 -210 5.6 TTGATCTAGATCAA
-167 4.2 TTGACATGGCTCAA
Shewanella sp W3-18-1 Sputw3181_2046 -210 5.6 TTGATCTAGATCAA
-167 3.9 TTGACATTGCTCAA
Shewanella woodyi ATCC 51908 Swoo_2425 -216 5.6 TTGATCTAGATCAA
-173 4.3 TTGACATAGCTCAA
Position: -95
Score: 4.7
Sequence: TTGTTCTAGATCAT
Locus tag: SVI_2319
SVI_2319 -95 4.7 TTGTTCTAGATCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pykA
Ortholog function: Pyruvate kinase (EC 2.7.1.40)
Shewanella amazonensis SB2B Sama_1814 -96 4.7 TTGAGATAGATCAT
Shewanella halifaxensis HAW-EB4 Shal_1947 -95 4.7 TTGAGTTAGATCAT
Shewanella loihica PV-4 Shew_2050 -94 4.7 TTGAGATAGATCAT
Shewanella pealeana ATCC 700345 Spea_2337 -95 4.7 TTGAGTTAGATCAT
Shewanella piezotolerans WP3 swp_2388 -95 4.7 TTGAGATAGATCAT
Shewanella sediminis HAW-EB3 Ssed_2068 -95 4.7 TTGCGCTAGATCAT
Shewanella woodyi ATCC 51908 Swoo_2541 -95 4.7 TTGCGCTAGATCAT
Position: -339
Score: 5.1
Sequence: ATGATCCAGATCAA
Locus tag: SVI_2425
SVI_2425 -339 5.1 ATGATCCAGATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: napD2
Ortholog function: Periplasmic nitrate reductase component NapD
Shewanella sediminis HAW-EB3 Ssed_1912 -275 5.2 TTGATCTGCATCAA
-245 4.4 GTGATGCGAATCAA
Position: -122
Score: 5
Sequence: ATGATCTCGATCAA
Locus tag: SVI_2930
SVI_2930 -122 5 ATGATCTCGATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrdD
Ortholog function: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Shewanella amazonensis SB2B Sama_1275 -114 4.6 ATGATCCATATCAA
Shewanella baltica OS155 Sbal_1665 -122 5.2 ATGATCTGGATCAT
Shewanella denitrificans OS217 Sden_1419 -166 5.5 ATGATCTAGATCAA
Shewanella frigidimarina NCIMB 400 Sfri_2443 -106 5.4 ATGATCTGGATCAA
Shewanella halifaxensis HAW-EB4 Shal_2692 -123 5.4 ATGATCTGGATCAA
Shewanella loihica PV-4 Shew_2449 -122 5.4 ATGATCTGGATCAA
Shewanella oneidensis MR-1 SO2834 -269 4 TTGATTTTAAGCAT
-121 5.2 ATGATCTGGATCAT
Shewanella pealeana ATCC 700345 Spea_2619 -123 5.4 ATGATCTGGATCAA
Shewanella piezotolerans WP3 swp_3165 -122 5.4 ATGATCTGGATCAA
-62 3.8 TTGATTTAAAGTAA
Shewanella putrefaciens CN-32 Sputcn32_1540 -203 3.9 ATGACTTAGGTCAA
-121 5.2 ATGATCTGGATCAT
Shewanella sediminis HAW-EB3 Ssed_1600 -122 5 ATGATCGAGATCAA
Shewanella sp ANA-3 Shewana3_2603 -121 5.2 ATGATCTGGATCAT
Shewanella sp MR-4 Shewmr4_2441 -121 5.2 ATGATCTGGATCAT
Shewanella sp MR-7 Shewmr7_2511 -121 5.2 ATGATCTGGATCAT
Shewanella sp W3-18-1 Sputw3181_2559 -203 3.9 ATGACTTAGGTCAA
-121 5.2 ATGATCTGGATCAT
Shewanella woodyi ATCC 51908 Swoo_3049 -122 4.8 ATGATCAGGATCAA
Position: -91
Score: 4.3
Sequence: TTGATCTAGGTAAA
Locus tag: SVI_3008
SVI_3008 -91 4.3 TTGATCTAGGTAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: feoA
Ortholog function: Ferrous iron transport protein A
Shewanella baltica OS155 Sbal_1594 -272 4 GTGATGTTGATCAC
-87 4.3 TTGATCTAGGTAAA
Shewanella halifaxensis HAW-EB4 Shal_2777 -275 4.1 GTGATCTGTGTCAA
-92 4.3 TTGATCTAGGTAAA
Shewanella loihica PV-4 Shew_2518 -241 4.6 GTGATCTAGATCAC
-89 4.9 TTGATCTAGATAAA
Shewanella oneidensis MR-1 SO1783 -87 4.3 TTGATCTAGGTAAA
Shewanella pealeana ATCC 700345 Spea_2691 -92 4.3 TTGATCTAGGTAAA
Shewanella piezotolerans WP3 swp_3271 -91 4.9 TTGATCTAGATAAA
Shewanella putrefaciens CN-32 Sputcn32_1480 -89 4.3 TTGATCTAGGTAAA
Shewanella sediminis HAW-EB3 Ssed_1531 -92 4.3 TTGATCTAGGTAAA
Shewanella sp ANA-3 Shewana3_2671 -87 4.3 TTGATCTAGGTAAA
Shewanella sp MR-4 Shewmr4_2505 -87 4.3 TTGATCTAGGTAAA
Shewanella sp MR-7 Shewmr7_2573 -87 4.3 TTGATCTAGGTAAA
Shewanella sp W3-18-1 Sputw3181_2621 -89 4.3 TTGATCTAGGTAAA
Position: -107
Score: 5.2
Sequence: TTGATTTGGATCAA
Locus tag: SVI_3111
SVI_3111 -107 5.2 TTGATTTGGATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ompW
Ortholog function: Outer membrane protein W precursor
Shewanella amazonensis SB2B Sama_1371 -105 5.2 TTGATTTGGATCAA
Shewanella baltica OS155 Sbal_1490 -103 5.2 TTGATTTGGATCAA
Shewanella denitrificans OS217 Sden_2589 -153 4.5 GTGAATTAGATCAA
-103 5.3 TTGATCCAGATCAA
Shewanella frigidimarina NCIMB 400 Sfri_1334 -166 4.6 GTGATCCAAATCAA
-105 5.3 TTGATCTAAATCAA
Shewanella halifaxensis HAW-EB4 Shal_2887 -107 4.4 TTGATTCAGGTCAA
Shewanella oneidensis MR-1 SO1673 -293 4.3 TTGATGTAAATGAA
-106 5.2 TTGATTTGGATCAA
Shewanella pealeana ATCC 700345 Spea_2787 -155 4.3 GTGATCTAGATCCT
-104 5.3 TTGATTTAGATCAA
Shewanella piezotolerans WP3 swp_3395 -107 5.6 TTGATCTAGATCAA
Shewanella putrefaciens CN-32 Sputcn32_1392 -103 5.3 TTGATTTAGATCAA
Shewanella sediminis HAW-EB3 Ssed_1469 -154 3.8 GTGAGCTTGGTCAT
-104 5.6 TTGATCTGGATCAA
Shewanella sp ANA-3 Shewana3_2775 -103 5.2 TTGATTTGGATCAA
Shewanella sp MR-4 Shewmr4_2601 -103 5.2 TTGATTTGGATCAA
Shewanella sp MR-7 Shewmr7_2668 -103 5.2 TTGATTTGGATCAA
Shewanella sp W3-18-1 Sputw3181_2709 -103 5.3 TTGATTTAGATCAA
Shewanella woodyi ATCC 51908 Swoo_3207 -154 4.1 GTGAGTTCGATCAA
-104 5.2 TTGATTTGGATCAA
Position: -85
Score: 4.4
Sequence: TTGATCGAGATCAG
Locus tag: SVI_3697
SVI_3697 -85 4.4 TTGATCGAGATCAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sama_0549
Ortholog function: Conserved hypothetical protein
Shewanella amazonensis SB2B Sama_0549 -135 4.6 TTGATTCACATCAA
-75 4.3 TTGATCAAGATCAG
Shewanella baltica OS155 Sbal_3565 -75 4.3 TTGATCAAGATCAG
Shewanella frigidimarina NCIMB 400 Sfri_0507 -75 4.3 TTGATCAAGATCAG
Shewanella halifaxensis HAW-EB4 Shal_0680 -75 4 TTGACTAAGATCAA
Shewanella loihica PV-4 Shew_3247 -87 4.4 TTGATCGAGATCAG
Shewanella pealeana ATCC 700345 Spea_0593 -138 4.2 ATGATCTACAACAT
-78 4.2 TTGACTGAGATCAA
Shewanella piezotolerans WP3 swp_4510 0 4.4 TTGACCAAGATCAA
Shewanella putrefaciens CN-32 Sputcn32_0777 -75 4.2 TTGATCAGGATCAG
Shewanella sediminis HAW-EB3 Ssed_4003 -244 4.2 TTTATCTAGATCAC
-87 4.4 TTGATCGAGATCAG
Shewanella sp ANA-3 Shewana3_0738 -75 4.2 TTGATCAGGATCAG
Shewanella sp W3-18-1 Sputw3181_3398 -75 4.2 TTGATCAGGATCAG
Shewanella woodyi ATCC 51908 Swoo_4146 -77 4.4 TTGATCGAGATCAG
Position: -237
Score: 4.7
Sequence: TTGATTTAGGTCAA
Locus tag: SVI_3704
SVI_3704 -237 4.7 TTGATTTAGGTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO0579
Ortholog function: Predicted serine/threonine protein kinase
Shewanella amazonensis SB2B Sama_0541 -118 4.9 TTGATTTGCATCAA
Shewanella baltica OS155 Sbal_0539 -154 4.5 TTGATGTAAGTCAA
Shewanella denitrificans OS217 Sden_0539 -87 4.5 TTGATGCAGGTCAA
Shewanella frigidimarina NCIMB 400 Sfri_3500 -226 4.6 TTGATATAGGTCAA
Shewanella halifaxensis HAW-EB4 Shal_0673 -123 4.8 TTGATGTGTATCAA
Shewanella loihica PV-4 Shew_3263 -124 4.6 TTGATATAGGTCAA
Shewanella oneidensis MR-1 SO0579 -145 4.9 TTGATATAAATCAA
Shewanella pealeana ATCC 700345 Spea_0586 -123 4.8 TTGATATGCATCAA
Shewanella piezotolerans WP3 swp_4517 -140 4.9 TTGATATACATCAA
Shewanella putrefaciens CN-32 Sputcn32_3298 -152 4.3 TTGATATAAGTCAA
Shewanella sediminis HAW-EB3 Ssed_4012 -185 4.6 TTGATATAGGTCAA
Shewanella sp ANA-3 Shewana3_0578 -152 4.9 TTGATATAAATCAA
Shewanella sp MR-4 Shewmr4_0579 -154 4.9 TTGATATAAATCAA
Shewanella sp MR-7 Shewmr7_3451 -154 4.9 TTGATATAAATCAA
Shewanella sp W3-18-1 Sputw3181_0643 -152 4.3 TTGATATAAGTCAA
Shewanella woodyi ATCC 51908 Swoo_4155 -226 4.8 TTGATGTAGGTCAA
Position: -114
Score: 4.7
Sequence: GTGATCTTGATCAT
Locus tag: SVI_3764
SVI_3764 -114 4.7 GTGATCTTGATCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nifS
Ortholog function: Cysteine desulfurase (EC 2.8.1.7)
Shewanella loihica PV-4 Shew_3354 -113 5.1 ATGATCTTGATCAA
Shewanella pealeana ATCC 700345 Spea_0544 -113 4.7 GTGATCTTGATCAT
Shewanella piezotolerans WP3 swp_4605 -106 4.7 GTGATCTTGATCAT
Shewanella woodyi ATCC 51908 Swoo_0566 -101 4.7 GTGATCTTGATCAT