Propagation of PdhR regulog to Shewanella violacea DSS12
| Source regulog: | PdhR - Shewanellaceae |
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | repressor |
| Biological process: | Pyruvate metabolism |
| Effector: | Pyruvate |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Shewanella violacea DSS12 |
| Orthologous TF(s) | SVI_0263 |
| Regulated genes | 3 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -39
Score: 6.4 Sequence: AATTGGTAAGACCAATT
Locus tag: SVI_0263
|
||||
| SVI_0263 | -39 | 6.4 | AATTGGTAAGACCAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pdhR | ||||
| Ortholog function: Transcriptional repressor for pyruvate dehydrogenase complex, GntR family | ||||
| Shewanella oneidensis MR-1 | SO_0423 | -175 | 4.5 | TAATGGTCTGACCCCTT |
| -38 | 6.4 | AATTGGTAAGACCAATT | ||
| Shewanella putrefaciens CN-32 | Sputcn32_3418 | -194 | 4.4 | AAATGGTCTGACCCCAT |
| -38 | 6.4 | AATTGGTAAGACCAATT | ||
| Shewanella sp W3-18-1 | Sputw3181_0525 | -194 | 4.4 | AAATGGTCTGACCCCAT |
| -38 | 6.4 | AATTGGTAAGACCAATT | ||
| Shewanella sp ANA-3 | Shewana3_0425 | -38 | 6.4 | AATTGGTAAGACCAATT |
| Shewanella sp MR-4 | Shewmr4_0427 | -175 | 4.4 | AAATGGTCTGACCCCAT |
| -38 | 6.4 | AATTGGTAAGACCAATT | ||
| Shewanella sp MR-7 | Shewmr7_3600 | -175 | 4.4 | AAATGGTCTGACCCCAT |
| -38 | 6.4 | AATTGGTAAGACCAATT | ||
| Shewanella baltica OS155 | Sbal_3914 | -175 | 4.4 | AAATGGTCTGACCCCAT |
| -38 | 6.4 | AATTGGTAAGACCAATT | ||
| Shewanella denitrificans OS217 | Sden_3384 | -185 | 4.8 | AAATGGTCTGACCCCTT |
| -38 | 6.4 | AATTGGTAAGACCAATT | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_3778 | -186 | 4.8 | AAATGGTCTGACCCCTT |
| -49 | 6.4 | AATTGGTAAGACCAATT | ||
| Shewanella amazonensis SB2B | Sama_0374 | -152 | 4.8 | AATTGGTCTGACCCCAT |
| -39 | 6.4 | AATTGGTAAGACCAATT | ||
| Shewanella loihica PV-4 | Shew_3432 | -39 | 6.4 | AATTGGTAAGACCAATT |
| Shewanella pealeana ATCC 700345 | Spea_0418 | -158 | 4.2 | CATTGGTCAGACCCCAT |
| -39 | 6.4 | AATTGGTAAGACCAATT | ||
| Shewanella halifaxensis HAW-EB4 | Shal_0475 | -157 | 4.4 | CATTGGTCTGACCCCTA |
| -39 | 6.4 | AATTGGTAAGACCAATT | ||
| Shewanella piezotolerans WP3 | swp_4753 | -158 | 4.2 | CATTGGTCTGACCCCAT |
| -39 | 6.4 | AATTGGTAAGACCAATT | ||
| Shewanella sediminis HAW-EB3 | Ssed_0430 | -158 | 4.5 | TAATGGTCAGACCCCTT |
| -39 | 6.4 | AATTGGTAAGACCAATT | ||
| Shewanella woodyi ATCC 51908 | Swoo_0318 | -159 | 4.3 | TAATGGTCTGACCGCTA |
| -39 | 6.4 | AATTGGTAAGACCAATT | ||
|
Position: -231
Score: 5.8 Sequence: CATTGGTATGACCAATT
Locus tag: SVI_3161
|
||||
| SVI_3161 | -231 | 5.8 | CATTGGTATGACCAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: oadG | ||||
| Ortholog function: Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3) | ||||
| Shewanella putrefaciens CN-32 | Sputcn32_1029 | -246 | 5.6 | ACATGGTAAGACCAATT |
| Shewanella sp W3-18-1 | Sputw3181_3136 | -246 | 5.6 | ACATGGTAAGACCAATT |
| Shewanella sp ANA-3 | Shewana3_3166 | -111 | 6.4 | AATTGGTCTTACCAATT |
| Shewanella sp MR-4 | Shewmr4_2987 | -79 | 6.4 | AATTGGTCTTACCAATT |
| Shewanella sp MR-7 | Shewmr7_3069 | -110 | 6.4 | AATTGGTCTTACCAATT |
| Shewanella baltica OS155 | Sbal_1024 | -251 | 6.1 | TATTGGTAAGACCAATT |
| Shewanella frigidimarina NCIMB 400 | Sfri_1065 | -299 | 5.7 | TTTTGGTAAGACCAATT |
| Shewanella amazonensis SB2B | Sama_1051 | -169 | 6.1 | TATTGGTAAGACCAATT |
| Shewanella loihica PV-4 | Shew_1219 | -202 | 6 | ATTTGGTAAGACCAATT |
| Shewanella pealeana ATCC 700345 | Spea_1198 | -195 | 5.2 | TTATGGTATGACCAATT |
| Shewanella halifaxensis HAW-EB4 | Shal_1235 | -196 | 4.7 | TTATGGTACGACCAATT |
| Shewanella piezotolerans WP3 | swp_1378 | -258 | 6.1 | TATTGGTATGACCAATT |
| Shewanella sediminis HAW-EB3 | Ssed_1320 | -148 | 6.1 | TATTGGTATGACCAATT |
| Shewanella woodyi ATCC 51908 | Swoo_3337 | -243 | 5.7 | TTTTGGTATGACCAATT |
|
Position: -143
Score: 6.3 Sequence: AATTGGTAATACCAATT
Locus tag: SVI_3730
|
||||
| SVI_3730 | -143 | 6.3 | AATTGGTAATACCAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: deaD | ||||
| Ortholog function: Cold-shock DEAD-box protein A | ||||
| Shewanella pealeana ATCC 700345 | Spea_0566 | -142 | 6.3 | AATTGGTATTACCAATT |
| Shewanella halifaxensis HAW-EB4 | Shal_0628 | -142 | 6 | GATTGGTATTACCAATT |
| Shewanella piezotolerans WP3 | swp_4551 | -141 | 5.9 | AAATGGTAATACCAATT |
| Shewanella sediminis HAW-EB3 | Ssed_4029 | -141 | 6.3 | AATTGGTAATACCAATT |
| Shewanella woodyi ATCC 51908 | Swoo_0636 | -143 | 6.3 | AATTGGTAATACCAATT |