Propagation of NorR regulog to Shewanella violacea DSS12
| Source regulog: | NorR - Shewanellaceae |
| Regulator type: | Transcription factor |
| Regulator family: | Fis |
| Regulation mode: | activator (repressor) |
| Biological process: | Nitrosative stress response |
| Effector: | Nitric oxide |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Shewanella violacea DSS12 |
| Orthologous TF(s) | SVI_2202, SVI_0683 |
| Regulated genes | 4 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -184
Score: 4.9 Sequence: AAATGTCGAAATGACACTG
Position: -159
Score: 4.6 Sequence: AACTGTCATTTAGACAGCG
Position: -139
Score: 5.2 Sequence: TAGTGTCATTATGACTGTG
Locus tag: SVI_2202
|
||||
| SVI_2202 | -184 | 4.9 | AAATGTCGAAATGACACTG | |
| -159 | 4.6 | AACTGTCATTTAGACAGCG | ||
| -139 | 5.2 | TAGTGTCATTATGACTGTG | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: norR | ||||
| Ortholog function: anaerobic nitric oxide reductase transcription regulator, Fis family | ||||
| Shewanella putrefaciens CN-32 | Sputcn32_3073 | -50 | 4.6 | CTGTGTCAATATCACAATT |
| Shewanella sp W3-18-1 | Sputw3181_0872 | -50 | 4.6 | CTGTGTCAATATCACAATT |
| Shewanella sp ANA-3 | Shewana3_0845 | -166 | 3.7 | AGGTGTCGTTTAGGCACCT |
| -58 | 4.6 | CTGTGTCAATATAACAATC | ||
| Shewanella sp MR-4 | Shewmr4_3090 | -167 | 3.7 | AGGTGTCGTTTAGGCACCT |
| -58 | 4.6 | CTGTGTCAATATAACAATC | ||
| Shewanella sp MR-7 | Shewmr7_0882 | -166 | 3.7 | AGGTGTCGTTTAGGCACCT |
| -58 | 4.6 | CTGTGTCAATATAACAATC | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_3254 | -58 | 4.4 | TGTTGTTATATTCACACTT |
| -43 | 5 | ACTTGTCATAATGACATCA | ||
| Shewanella amazonensis SB2B | Sama_0727 | -76 | 5 | CCATGTCAAAATGACAATT |
| Shewanella loihica PV-4 | Shew_0656 | -120 | 5.3 | AAGTGTAAAAATGACAATA |
| -96 | 4.4 | TACTGTTAAATTGACATAT | ||
| Shewanella pealeana ATCC 700345 | Spea_3444 | -154 | 4.7 | AAGTGTAAAATTGACATTG |
| -119 | 4.1 | TACTGTTAAAAAGACACAC | ||
| Shewanella halifaxensis HAW-EB4 | Shal_3555 | -86 | 4.3 | TACTGTAAAAAAGACAGCA |
| Shewanella piezotolerans WP3 | swp_0832 | -105 | 4.2 | AACAGTATATTTGACACTG |
| -72 | 4.9 | TAATGTCAAAAAGACAAAA | ||
| Shewanella sediminis HAW-EB3 | Ssed_3823 | -160 | 4.1 | TTTTGTATTTATGACAGCA |
| -136 | 5.2 | AAATGTCAATATGACAAGC | ||
| Shewanella woodyi ATCC 51908 | Swoo_0760 | -62 | 5.2 | GATTGTCAAAATGACATAC |
| -37 | 4.1 | TATGGTCATATTCAAACCA | ||
|
Position: -185
Score: 5.2 Sequence: CACAGTCATAATGACACTA
Position: -140
Score: 4.9 Sequence: CAGTGTCATTTCGACATTT
Locus tag: SVI_2203
|
||||
| SVI_2203 | -185 | 5.2 | CACAGTCATAATGACACTA | |
| -140 | 4.9 | CAGTGTCATTTCGACATTT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: norV | ||||
| Ortholog function: Anaerobic nitric oxide reductase flavorubredoxin | ||||
| Shewanella frigidimarina NCIMB 400 | Sfri_1583 | -195 | 4.8 | CAAAGTCATAATGACACCC |
| -176 | 4.4 | GATAGTCATAAAGACATAG | ||
| -152 | 4.9 | AATTGTTATAATGACACCC | ||