Propagation of NtrC regulog to Shewanella baltica OS223
| Source regulog: | NtrC - Shewanellaceae |
| Regulator type: | Transcription factor |
| Regulator family: | Fis |
| Regulation mode: | activator |
| Biological process: | Nitrogen assimilation |
| Effector: | Phosphorylated NtrB, signal histidine kinase |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Shewanella baltica OS223 |
| Orthologous TF(s) | Sbal223_0261 |
| Regulated genes | 4 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -52
Score: 6 Sequence: TGCACCAGATTGGTGCA
Position: -39
Score: 5.8 Sequence: TGCACCATGGTGGTGCA
Locus tag: Sbal223_0262
|
||||
| Sbal223_0262 | -52 | 6 | TGCACCAGATTGGTGCA | |
| -39 | 5.8 | TGCACCATGGTGGTGCA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ntrB | ||||
| Ortholog function: nitrogen regulation protein | ||||
| Shewanella oneidensis MR-1 | SO_4471 | -52 | 6 | TGCACCAAATCGGTGCA |
| -39 | 4.9 | TGCAACATAAGGGTGCA | ||
| Shewanella putrefaciens CN-32 | Sputcn32_0372 | -52 | 6 | TGCACCAAATCGGTGCA |
| -39 | 5 | TGCATCATGTTGATGCA | ||
| Shewanella sp W3-18-1 | Sputw3181_0222 | -52 | 6 | TGCACCAAATCGGTGCA |
| -39 | 5 | TGCATCATGTTGATGCA | ||
| Shewanella sp ANA-3 | Shewana3_0259 | -52 | 6 | TGCACCAAATCGGTGCA |
| -39 | 5.5 | TGCAACATAATGGTGCA | ||
| Shewanella sp MR-4 | Shewmr4_0258 | -52 | 6 | TGCACCAAATCGGTGCA |
| -39 | 5.5 | TGCAACATAATGGTGCA | ||
| Shewanella sp MR-7 | Shewmr7_3763 | -52 | 6 | TGCACCAAATCGGTGCA |
| -39 | 5.5 | TGCAACATAATGGTGCA | ||
| Shewanella baltica OS155 | Sbal_0267 | -52 | 5.5 | TGCACCAGATTGGCGCA |
| -39 | 5.8 | CGCACCATAGTGGTGCA | ||
| Shewanella denitrificans OS217 | Sden_3457 | -79 | 6 | TGCACCATAGTGGTGCA |
| -52 | 5.8 | TGCACCACAATGGTGCG | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_0321 | -50 | 6.1 | CGCACCAAATTGGTGCA |
| -37 | 5.7 | TGCATCATAATGGTGCA | ||
| Shewanella amazonensis SB2B | Sama_3426 | -51 | 6.3 | TGCACCATATTGGTGCA |
| -38 | 6.3 | TGCACCATATTGGTGCA | ||
| Shewanella loihica PV-4 | Shew_3560 | -52 | 6.3 | TGCACCAAATTGGTGCA |
| -39 | 6.2 | TGCACCATTATGGTGCA | ||
| Shewanella pealeana ATCC 700345 | Spea_3929 | -79 | 6 | TGCACCATTTCGGTGCA |
| Shewanella halifaxensis HAW-EB4 | Shal_0342 | -79 | 6 | TGCACCACTTTGGTGCA |
| -66 | 5.8 | TGCACCATAGTGGTGCG | ||
| Shewanella piezotolerans WP3 | swp_0250 | -79 | 6.1 | CGCACCATTTTGGTGCA |
| -66 | 6 | TGCACCATAGTGGTGCA | ||
| -39 | 4.8 | CGTTCCAAAATGGTGCA | ||
| Shewanella sediminis HAW-EB3 | Ssed_0283 | -51 | 6.3 | TGCACCAATTTGGTGCA |
| -38 | 6 | TGCACCATGATGGTGCA | ||
| Shewanella woodyi ATCC 51908 | Swoo_4650 | -51 | 5.6 | TGCACTAGTTTGGTGCA |
| -38 | 6.2 | TGCACCATAATGGTGCA | ||
|
Position: -183
Score: 5.5 Sequence: AGCACCATAGTGGTGCA
Locus tag: Sbal223_0311
|
||||
| Sbal223_0311 | -183 | 5.5 | AGCACCATAGTGGTGCA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glnA | ||||
| Ortholog function: glutamine synthetase, type I | ||||
| Shewanella oneidensis MR-1 | SO_4410 | -246 | 4.6 | TGCACTAAAATGGGGGA |
| -179 | 5.4 | TGCACCAACACAGTGCA | ||
| Shewanella putrefaciens CN-32 | Sputcn32_0412 | -184 | 5.4 | CGCACCATCATAGTGCA |
| Shewanella sp W3-18-1 | Sputw3181_0266 | -184 | 5.6 | CGCACCATTATAGTGCA |
| Shewanella sp ANA-3 | Shewana3_0300 | -247 | 4.6 | TGCACTAAAATGGTGTT |
| -180 | 5.6 | CGCACCAATATAGTGCA | ||
| Shewanella sp MR-4 | Shewmr4_0305 | -247 | 4.6 | TGCACTAAAATGGTGTT |
| -180 | 5.8 | AGCACCAATATGGTGCA | ||
| Shewanella sp MR-7 | Shewmr7_3719 | -183 | 5.6 | AGCACCAACATGGTGCA |
| Shewanella baltica OS155 | Sbal_0306 | -183 | 5.5 | AGCACCATAGTGGTGCA |
| Shewanella denitrificans OS217 | Sden_3454 | -251 | 5.7 | TGCACCATAACGGTGCG |
| -228 | 5 | TGCACCATTATGGTGAT | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_0325 | -197 | 5.4 | TGCACGAGGTTGGTGCA |
| Shewanella amazonensis SB2B | Sama_3416 | -244 | 4.9 | TGCACCTTTATCATGCA |
| -214 | 5.1 | CGCACCAACATTGTGCG | ||
| -192 | 5.5 | TGCCCCGATTTGGTGCA | ||
| Shewanella loihica PV-4 | Shew_3554 | -217 | 5.4 | CGCACCATATTGGTGAA |
| -178 | 5.9 | TGCACCTTTATGGTGCA | ||
| Shewanella pealeana ATCC 700345 | Spea_3916 | -202 | 4.7 | TGCACCATATAGATCCA |
| -180 | 5.8 | CGCACCAAAATGGTGCG | ||
| Shewanella halifaxensis HAW-EB4 | Shal_0353 | -180 | 5.4 | CGCACCAAAATAGTGCG |
| Shewanella piezotolerans WP3 | swp_0268 | -218 | 4.7 | TGCACGATTATGAAGCA |
| -201 | 4.8 | CGCACCAAAATGATCCA | ||
| -179 | 4.9 | CGCACCATTAGAGTGCA | ||
| Shewanella sediminis HAW-EB3 | Ssed_0292 | -227 | 4.7 | CGCACCAGCTTGGTGAG |
| -188 | 5.5 | CGCACCAACTTAGTGCA | ||
| Shewanella woodyi ATCC 51908 | Swoo_4643 | -216 | 4.7 | CGCACCAGGATGGTGAG |
| -199 | 5 | CGCACCATTATCGGGCA | ||
| -177 | 5.4 | CGCACCAAACTAGTGCA | ||
|
Position: -168
Score: 4.6 Sequence: CGCACCAAATCAGGGCG
Locus tag: Sbal223_3536
|
||||
| Sbal223_3536 | -168 | 4.6 | CGCACCAAATCAGGGCG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glnK2 | ||||
| Ortholog function: nitrogen regulatory protein P-II | ||||
| Shewanella oneidensis MR-1 | SO_3819 | -181 | 5.3 | TGCACCAAAATCGCGCA |
| -168 | 4.8 | CGCACCAAATCAGGGCA | ||
| Shewanella putrefaciens CN-32 | Sputcn32_0815 | -109 | 4.6 | TGCACTGAAATAATGCA |
| -96 | 5.7 | TGCACCTGTATGGTGCA | ||
| Shewanella sp W3-18-1 | Sputw3181_3358 | -109 | 5 | TGCACCGAAATAATGCA |
| -96 | 5.4 | TGCACCTATATGGAGCA | ||
| Shewanella sp ANA-3 | Shewana3_0779 | -182 | 4.8 | TGCACCATCACAGCGCA |
| -169 | 5 | CGCACCAAATCGGGGCG | ||
| Shewanella sp MR-4 | Shewmr4_3159 | -182 | 4.8 | TGCACCATCACAGCGCA |
| -169 | 5 | CGCACCAAATCGGGGCG | ||
| Shewanella sp MR-7 | Shewmr7_0808 | -169 | 5 | CGCACCAAATCGGGGCG |
| Shewanella baltica OS155 | Sbal_0707 | -168 | 4.6 | CGCACCAAATCAGGGCG |
| Shewanella woodyi ATCC 51908 | Swoo_1181 | -140 | 5.2 | TGCACCATGGTGATGCA |
|
Position: -144
Score: 5.2 Sequence: TGCTCGATTATGGTGCA
Locus tag: Sbal223_3650
|
||||
| Sbal223_3650 | -144 | 5.2 | TGCTCGATTATGGTGCA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glnB | ||||
| Ortholog function: nitrogen regulatory protein P-II 1 | ||||
| Shewanella oneidensis MR-1 | SO_0761 | -142 | 5.5 | TGCACAATTCTGGTGCA |
| Shewanella putrefaciens CN-32 | Sputcn32_3241 | -143 | 5.5 | TGCACAAATGTGGTGCA |
| Shewanella sp W3-18-1 | Sputw3181_0700 | -143 | 5.5 | TGCACAAATGTGGTGCA |
| Shewanella sp ANA-3 | Shewana3_3532 | -143 | 5.2 | TGCACAAGTCTGGTGCA |
| Shewanella sp MR-4 | Shewmr4_3362 | -143 | 5.2 | TGCACAAGTCTGGTGCA |
| Shewanella sp MR-7 | Shewmr7_0591 | -143 | 5.2 | TGCACAAGTCTGGTGCA |
| Shewanella baltica OS155 | Sbal_0797 | -144 | 5.1 | TGCTCGATCATGGTGCA |
| Shewanella denitrificans OS217 | Sden_2905 | -195 | 5.2 | TGCGCCACTTAGGTGCA |
| -152 | 5.7 | CGCACCTTATTGGTGCA | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_0623 | -183 | 5.4 | TGCACCAAAACGATGCA |
| Shewanella amazonensis SB2B | Sama_0650 | -172 | 5.6 | TGCACCACCTTGGTGCG |
| -142 | 4.7 | TGCACTTTTTTTGTGCG | ||
| Shewanella loihica PV-4 | Shew_0846 | -172 | 4.5 | TGCGCTATTTTTGTGCG |
| -142 | 5.8 | CGCACCTAATTGGTGCA | ||
| Shewanella pealeana ATCC 700345 | Spea_0833 | -135 | 5.5 | TGCACCTTGCTGGTGCA |
| Shewanella halifaxensis HAW-EB4 | Shal_0888 | -137 | 4.7 | CGCACTCGAATGGTGCA |
| Shewanella piezotolerans WP3 | swp_3956 | -136 | 5.4 | TGCACCCGATTGGTGCA |
| Shewanella sediminis HAW-EB3 | Ssed_0933 | -151 | 5.1 | CGCACTTGTTTGGTGCA |
| Shewanella woodyi ATCC 51908 | Swoo_0979 | -173 | 4.6 | TGCGCTAATTCCGTGCA |
| -143 | 5.4 | CGCACCTTAATGGTGCG | ||