Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of AraR regulog to Shewanella baltica OS223

Reference regulog properties
Source regulog: AraR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode: repressor
Biological process: Arabinose utilization
Effector: Arabinose
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Shewanella baltica OS223
Orthologous TF(s) Sbal223_2142
Regulated genes 3
Built upon 30 sites [see more]
Predicted regulatory interactions in Shewanella baltica OS223
Locus tag Position Score Sequence
Position: -82
Score: 6.1
Sequence: TAGTAGTATTGTAGTACTA
Locus tag: Sbal223_2138
Sbal223_2138 -82 6.1 TAGTAGTATTGTAGTACTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: araB
Ortholog function: Ribulokinase (EC 2.7.1.16)
Shewanella putrefaciens CN-32 Sputcn32_2068 -107 5.3 AAATAATATTGTAATACCA
-80 6.1 TAGTAGTATTGTAGTACTA
Shewanella sp W3-18-1 Sputw3181_1944 -107 5.3 AAATAATATTGTAATACCA
-80 6.1 TAGTAGTATTGTAGTACTA
Position: -45
Score: 6.1
Sequence: TGGTATTACTATAATACTA
Locus tag: Sbal223_2143
Sbal223_2143 -45 6.1 TGGTATTACTATAATACTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: arb43
Ortholog function: Hypothetical glycoside hydrolase, family 43, similar to arabinosidase
Shewanella putrefaciens CN-32 Sputcn32_2063 -45 6.1 TGGTATTACTATAATACTA
Shewanella sp W3-18-1 Sputw3181_1949 -45 6.1 TGGTATTACTATAATACTA
Shewanella sp ANA-3 Shewana3_2069 -45 6 TGGTATTACTATAATACCA
Shewanella sp MR-4 Shewmr4_1982 -45 6 TGGTATTACTATAATACCA
Shewanella sp MR-7 Shewmr7_1992 -45 6 TGGTATTACTATAATACCA
Position: -179
Score: 6.1
Sequence: TAGTATTATAGTAATACCA
Locus tag: Sbal223_2144
Sbal223_2144 -179 6.1 TAGTATTATAGTAATACCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: araC
Ortholog function: L-arabonate dehydratase (EC 4.2.1.25)
Shewanella putrefaciens CN-32 Sputcn32_2062 -178 6.1 TAGTATTATAGTAATACCA
Shewanella sp W3-18-1 Sputw3181_1950 -178 6.1 TAGTATTATAGTAATACCA
Shewanella sp ANA-3 Shewana3_2070 -123 6 TGGTATTATAGTAATACCA
Shewanella sp MR-4 Shewmr4_1983 -150 6 TGGTATTATAGTAATACCA
Shewanella sp MR-7 Shewmr7_1991 -150 6 TGGTATTATAGTAATACCA
© 2009-2020 RegPrecise