Propagation of Fnr regulog to Pseudoalteromonas atlantica T6c
| Source regulog: | Fnr - Shewanellaceae |
| Regulator type: | Transcription factor |
| Regulator family: | CRP |
| Regulation mode: | |
| Biological process: | Anaerobic metabolism |
| Effector: | Oxygen |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Pseudoalteromonas atlantica T6c |
| Orthologous TF(s) | No orthologous TFs found |
| Regulated genes | 7 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -130
Score: 5 Sequence: TTGATCCAGCTCAA
Position: -70
Score: 5.4 Sequence: TTGATGTAGATCAA
Locus tag: Patl_0030
|
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| Patl_0030 | -130 | 5 | TTGATCCAGCTCAA | |
| -70 | 5.4 | TTGATGTAGATCAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ompW | ||||
| Ortholog function: Outer membrane protein W precursor | ||||
| Shewanella amazonensis SB2B | Sama_1371 | -105 | 5.2 | TTGATTTGGATCAA |
| Shewanella baltica OS155 | Sbal_1490 | -103 | 5.2 | TTGATTTGGATCAA |
| Shewanella denitrificans OS217 | Sden_2589 | -153 | 4.5 | GTGAATTAGATCAA |
| -103 | 5.3 | TTGATCCAGATCAA | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_1334 | -166 | 4.6 | GTGATCCAAATCAA |
| -105 | 5.3 | TTGATCTAAATCAA | ||
| Shewanella halifaxensis HAW-EB4 | Shal_2887 | -107 | 4.4 | TTGATTCAGGTCAA |
| Shewanella oneidensis MR-1 | SO1673 | -293 | 4.3 | TTGATGTAAATGAA |
| -106 | 5.2 | TTGATTTGGATCAA | ||
| Shewanella pealeana ATCC 700345 | Spea_2787 | -155 | 4.3 | GTGATCTAGATCCT |
| -104 | 5.3 | TTGATTTAGATCAA | ||
| Shewanella piezotolerans WP3 | swp_3395 | -107 | 5.6 | TTGATCTAGATCAA |
| Shewanella putrefaciens CN-32 | Sputcn32_1392 | -103 | 5.3 | TTGATTTAGATCAA |
| Shewanella sediminis HAW-EB3 | Ssed_1469 | -154 | 3.8 | GTGAGCTTGGTCAT |
| -104 | 5.6 | TTGATCTGGATCAA | ||
| Shewanella sp ANA-3 | Shewana3_2775 | -103 | 5.2 | TTGATTTGGATCAA |
| Shewanella sp MR-4 | Shewmr4_2601 | -103 | 5.2 | TTGATTTGGATCAA |
| Shewanella sp MR-7 | Shewmr7_2668 | -103 | 5.2 | TTGATTTGGATCAA |
| Shewanella sp W3-18-1 | Sputw3181_2709 | -103 | 5.3 | TTGATTTAGATCAA |
| Shewanella woodyi ATCC 51908 | Swoo_3207 | -154 | 4.1 | GTGAGTTCGATCAA |
| -104 | 5.2 | TTGATTTGGATCAA | ||
|
Position: -311
Score: 4.8 Sequence: ATGATCTAAAGCAA
Locus tag: Patl_2147
|
||||
| Patl_2147 | -311 | 4.8 | ATGATCTAAAGCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: etfD | ||||
| Ortholog function: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1) | ||||
| Shewanella amazonensis SB2B | Sama_3523 | -184 | 4.6 | TTGGTCTGGATCAT |
| Shewanella loihica PV-4 | Shew_0086 | -175 | 3.9 | TTGTTTAAGATCAA |
| Shewanella oneidensis MR-1 | SO4453 | -198 | 4.3 | TTGATCAGGTTCAA |
| Shewanella putrefaciens CN-32 | Sputcn32_0388 | -198 | 4.2 | TTGGCCTAGATCAA |
| Shewanella sediminis HAW-EB3 | Ssed_4403 | -177 | 4.6 | TTGCTCAAGATCAA |
| Shewanella sp ANA-3 | Shewana3_0273 | -202 | 4.3 | TTGATCCGCTTCAA |
| Shewanella sp MR-4 | Shewmr4_0272 | -202 | 4.3 | TTGATCCGCTTCAA |
| Shewanella sp MR-7 | Shewmr7_3749 | -202 | 4.3 | TTGATCCGCTTCAA |
| Shewanella sp W3-18-1 | Sputw3181_0242 | -198 | 4.2 | TTGGCCTAGATCAA |
| Shewanella woodyi ATCC 51908 | Swoo_4794 | -162 | 4.5 | TTGCTCAGGATCAA |