Propagation of TyrR regulog to Pseudoalteromonas atlantica T6c
| Source regulog: | TyrR - Shewanellaceae |
| Regulator type: | Transcription factor |
| Regulator family: | TyrR |
| Regulation mode: | activator |
| Biological process: | Amino acid utilization |
| Effector: | Tyrosine; Phenylalanine |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Pseudoalteromonas atlantica T6c |
| Orthologous TF(s) | Patl_2998 |
| Regulated genes | 10 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: 0
Score: 4.1 Sequence: ATGTCATTATCAAATTACAG
Locus tag: Patl_0951
|
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| Patl_0951 | 0 | 4.1 | ATGTCATTATCAAATTACAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ivdF | ||||
| Ortholog function: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) | ||||
| Shewanella oneidensis MR-1 | SO_1682 | -159 | 4.4 | CTGTAAATCCTGACTGACAA |
| Shewanella putrefaciens CN-32 | Sputcn32_1402 | -167 | 4.3 | CTGTAAATCCTTACTGACAA |
| Shewanella sp W3-18-1 | Sputw3181_2699 | -167 | 4.3 | CTGTAAATCCTTACTGACAA |
| Shewanella sp ANA-3 | Shewana3_2766 | -159 | 4.4 | CTGTAAATCCTGACTGACAA |
| Shewanella sp MR-4 | Shewmr4_2592 | -159 | 4.4 | CTGTAAATCCTGACTGACAA |
| Shewanella sp MR-7 | Shewmr7_2659 | -159 | 4.4 | CTGTAAATCCTGACTGACAA |
| Shewanella baltica OS155 | Sbal_1500 | -162 | 4.3 | CTGTAAATCCTTACTGACAT |
| Shewanella denitrificans OS217 | Sden_1938 | -159 | 4.4 | GTGTAAATCTTCAGTGACAA |
| Shewanella frigidimarina NCIMB 400 | Sfri_1343 | -140 | 4.1 | CTGTAAATCTTCACTGACAA |
| Shewanella amazonensis SB2B | Sama_1380 | -195 | 3.8 | GTGTCAATCTCAGTTCCCGC |
| -173 | 4.6 | CTGTAAATCCAGAGTGACAA | ||
| Shewanella loihica PV-4 | Shew_1672 | -168 | 4.4 | CTGTAAATTCAGCCTGACAA |
| Shewanella pealeana ATCC 700345 | Spea_2778 | -231 | 4.5 | GTGTAAATTCTATGTGACAA |
| Shewanella halifaxensis HAW-EB4 | Shal_2873 | -231 | 4.4 | GTGTAAATCCTTTGTGACAT |
| Shewanella piezotolerans WP3 | swp_3382 | -75 | 3.8 | TTTTAAGTTGATGTTTACAC |
| Shewanella sediminis HAW-EB3 | Ssed_1478 | -185 | 4.5 | CTGTAAATCCTGAGTGACAT |
| Shewanella woodyi ATCC 51908 | Swoo_3197 | -173 | 4.7 | CTGTAAATCTTGAGTGACAT |
|
Position: -178
Score: 4.2 Sequence: AGGTAAAGTATGAGTTACAA
Locus tag: Patl_2923
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| Patl_2923 | -178 | 4.2 | AGGTAAAGTATGAGTTACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ivdA | ||||
| Ortholog function: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16) | ||||
| Shewanella oneidensis MR-1 | SO_1677 | -159 | 4.4 | CTGTAAATCCTGACTGACAA |
| Shewanella putrefaciens CN-32 | Sputcn32_1397 | -167 | 4.3 | CTGTAAATCCTTACTGACAA |
| Shewanella sp W3-18-1 | Sputw3181_2704 | -167 | 4.3 | CTGTAAATCCTTACTGACAA |
| Shewanella sp ANA-3 | Shewana3_2771 | -159 | 4.4 | CTGTAAATCCTGACTGACAA |
| Shewanella sp MR-4 | Shewmr4_2597 | -159 | 4.4 | CTGTAAATCCTGACTGACAA |
| Shewanella sp MR-7 | Shewmr7_2664 | -159 | 4.4 | CTGTAAATCCTGACTGACAA |
| Shewanella baltica OS155 | Sbal_1495 | -162 | 4.3 | CTGTAAATCCTTACTGACAT |
| Shewanella denitrificans OS217 | Sden_1943 | -159 | 4.4 | GTGTAAATCTTCAGTGACAA |
| Shewanella frigidimarina NCIMB 400 | Sfri_1338 | -140 | 4.1 | CTGTAAATCTTCACTGACAA |
| Shewanella amazonensis SB2B | Sama_1375 | -195 | 3.8 | GTGTCAATCTCAGTTCCCGC |
| -173 | 4.6 | CTGTAAATCCAGAGTGACAA | ||
| Shewanella loihica PV-4 | Shew_1667 | -168 | 4.4 | CTGTAAATTCAGCCTGACAA |
| Shewanella pealeana ATCC 700345 | Spea_2783 | -231 | 4.5 | GTGTAAATTCTATGTGACAA |
| Shewanella halifaxensis HAW-EB4 | Shal_2878 | -231 | 4.4 | GTGTAAATCCTTTGTGACAT |
| Shewanella piezotolerans WP3 | swp_3387 | -75 | 3.8 | TTTTAAGTTGATGTTTACAC |
| Shewanella sediminis HAW-EB3 | Ssed_1473 | -185 | 4.5 | CTGTAAATCCTGAGTGACAT |
| Shewanella woodyi ATCC 51908 | Swoo_3202 | -173 | 4.7 | CTGTAAATCTTGAGTGACAT |
|
Position: -121
Score: 4.2 Sequence: TTGTAACTCATACTTTACCT
Locus tag: Patl_2924
|
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| Patl_2924 | -121 | 4.2 | TTGTAACTCATACTTTACCT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: liuR | ||||
| Ortholog function: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family | ||||
| Shewanella oneidensis MR-1 | SO_1898 | -105 | 4.6 | GTGGCAACAAGAATTGACAA |
| Shewanella putrefaciens CN-32 | Sputcn32_1720 | -108 | 4.5 | ATGGCAATTGGGATTGACAC |
| Shewanella sp W3-18-1 | Sputw3181_2305 | -108 | 4.5 | ATGGCAATTGGGATTGACAC |
| Shewanella sp ANA-3 | Shewana3_1673 | -105 | 4.6 | GTGGCAACAAGAATTGACAA |
| Shewanella sp MR-4 | Shewmr4_2321 | -105 | 4.6 | GTGGCAACAAGAATTGACAA |
| Shewanella sp MR-7 | Shewmr7_2393 | -105 | 4.6 | GTGGCAACAAGAATTGACAA |
| Shewanella baltica OS155 | Sbal_2827 | -108 | 4.5 | ATGGCAATTGGGATTGACAC |
| Shewanella denitrificans OS217 | Sden_2244 | -117 | 4.2 | GTGGAAACAGAATTTAACAC |
| Shewanella frigidimarina NCIMB 400 | Sfri_2726 | -117 | 4.7 | GTGGCAAGCAAAATTAACAC |
| Shewanella amazonensis SB2B | Sama_1363 | -123 | 4.2 | CTGTAAGCTAAGCCTGACAC |
| Shewanella pealeana ATCC 700345 | Spea_2796 | -111 | 4.4 | GTGGCAAGCGCAATTGACAT |
| Shewanella halifaxensis HAW-EB4 | Shal_2901 | -110 | 4.4 | GTGGCAAGCGCGATTGACAT |
| Shewanella piezotolerans WP3 | swp_3441 | -76 | 4.2 | TTGGCACGCACAATTGACAT |
| Shewanella woodyi ATCC 51908 | Swoo_3222 | -129 | 4.5 | CTGGAAAACTTACTTGCCAT |
|
Position: -41
Score: 4.9 Sequence: GTGTAATATTATCTTTACAT
Locus tag: Patl_2998
|
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| Patl_2998 | -41 | 4.9 | GTGTAATATTATCTTTACAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: tyrR | ||||
| Ortholog function: Transcriptional regulator of aromatic amino acid biosynthesis | ||||
| Shewanella oneidensis MR-1 | SO_1669 | -190 | 4.7 | CTGTAAACTAGGCTTGCCAC |
| Shewanella putrefaciens CN-32 | Sputcn32_1388 | -188 | 4.8 | CTGTAAACTTGACTTGCCAC |
| Shewanella sp W3-18-1 | Sputw3181_2713 | -188 | 4.8 | CTGTAAACTTGACTTGCCAC |
| Shewanella sp ANA-3 | Shewana3_2779 | -205 | 4.7 | CTGTAAACTAGACTTGCCAC |
| Shewanella sp MR-4 | Shewmr4_2605 | -205 | 4.7 | CTGTAAACTAGACTTGCCAC |
| Shewanella sp MR-7 | Shewmr7_2672 | -205 | 4.7 | CTGTAAACTAGACTTGCCAC |
| Shewanella baltica OS155 | Sbal_1486 | -196 | 4.7 | CTGTAAACTAGGCTTGCCAC |
| Shewanella denitrificans OS217 | Sden_2593 | -155 | 4.6 | CTGTAAACAAGACTTGCCAC |
| Shewanella frigidimarina NCIMB 400 | Sfri_1330 | -92 | 4.7 | CTGTAAACTTCACTTGCCAC |
| Shewanella amazonensis SB2B | Sama_2220 | -134 | 4.6 | CTGTAAACAAGACTTGCCAC |
| Shewanella loihica PV-4 | Shew_1437 | -162 | 4.7 | GTGTAAACAACTCTTGCCAC |
| Shewanella pealeana ATCC 700345 | Spea_1450 | -158 | 4.6 | CTGTAAACAAGTCTTGCCAC |
| Shewanella halifaxensis HAW-EB4 | Shal_1533 | -159 | 4.1 | CTGTAAACAAGCCTTGCCAC |
| Shewanella piezotolerans WP3 | swp_1652 | -309 | 4.6 | cTGTAAAcaagtCTTgcCAC |
| Shewanella sediminis HAW-EB3 | Ssed_2928 | -151 | 4.6 | CTGTAAACAAGACTTGCCAC |
| Shewanella woodyi ATCC 51908 | Swoo_1717 | -161 | 4.6 | CTGTAAACAAGACTTGCCAC |
|
Position: -117
Score: 4.1 Sequence: TTGTAGCTTAATGTTTACAT
Locus tag: Patl_2999
|
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| Patl_2999 | -117 | 4.1 | TTGTAGCTTAATGTTTACAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: phhA | ||||
| Ortholog function: Phenylalanine-4-hydroxylase (EC 1.14.16.1) | ||||
| Shewanella oneidensis MR-1 | SO_1666 | -122 | 4.4 | TTGTAATATTTGCTTTACGT |
| Shewanella putrefaciens CN-32 | Sputcn32_1386 | -122 | 4.4 | TTGTAATATTTGCTTTACGT |
| Shewanella sp W3-18-1 | Sputw3181_2715 | -122 | 4.4 | TTGTAATATTTGCTTTACGT |
| Shewanella sp ANA-3 | Shewana3_2781 | -122 | 4.4 | TTGTAATATTTGCTTTACGT |
| Shewanella sp MR-4 | Shewmr4_2607 | -122 | 4.4 | TTGTAATATTTACTTTACGT |
| Shewanella sp MR-7 | Shewmr7_2674 | -122 | 4.4 | TTGTAATATTTGCTTTACGT |
| Shewanella baltica OS155 | Sbal_1484 | -122 | 4.4 | TTGTAATATTTGCTTTACGT |
| Shewanella denitrificans OS217 | Sden_2595 | -127 | 4.4 | TTGTATGCTTAAGTTTACAA |
| Shewanella frigidimarina NCIMB 400 | Sfri_1328 | -121 | 4.1 | TTGTATTTATTTGTTTACGA |
| Shewanella amazonensis SB2B | Sama_2222 | -123 | 4.3 | TTGTAATAAAAGCTTTACGA |
| Shewanella loihica PV-4 | Shew_1435 | -87 | 4.7 | ATGTAAATTTGAGGTTACAT |
| Shewanella pealeana ATCC 700345 | Spea_1448 | -239 | 4.3 | GTGTCAATTTCTATATACGC |
| -173 | 4.8 | GTGTAACATTAGCATTACAC | ||
| Shewanella halifaxensis HAW-EB4 | Shal_1531 | -133 | 4.3 | GTGTAACAACTTCGTTACAC |
| Shewanella piezotolerans WP3 | swp_1650 | -188 | 4.6 | CTGTAAATTATGGCTTACAA |
| -123 | 4.5 | ATGTAAACTTATGGTTACGC | ||
| Shewanella sediminis HAW-EB3 | Ssed_2930 | -188 | 3.7 | TCGTCAATAAATGGTGACGA |
| -122 | 4.2 | TTGTAAGCAAATTGTTACAC | ||
| Shewanella woodyi ATCC 51908 | Swoo_1715 | -186 | 3.8 | TTGGCAATAATTCAATACGA |
| -121 | 4.6 | GTGTAACTTTTTGGTTACAA | ||