Propagation of ArgR regulog to Pseudoalteromonas atlantica T6c
| Source regulog: | ArgR - Shewanellaceae |
| Regulator type: | Transcription factor |
| Regulator family: | ArgR |
| Regulation mode: | repressor (activator) |
| Biological process: | Arginine degradation; Arginine biosynthesis |
| Effector: | Arginine |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Pseudoalteromonas atlantica T6c |
| Orthologous TF(s) | Patl_0538 |
| Regulated genes | 10 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -331
Score: 4.7 Sequence: TTTAAATAATTATTCATT
Position: -320
Score: 3.7 Sequence: ATTCATTTTATTTGCATA
Position: -310
Score: 3.9 Sequence: TTTGCATAAATATATAAC
Position: -199
Score: 3.7 Sequence: TTCGCATATGATTTCAAT
Locus tag: Patl_0982
|
||||
| Patl_0982 | -331 | 4.7 | TTTAAATAATTATTCATT | |
| -320 | 3.7 | ATTCATTTTATTTGCATA | ||
| -310 | 3.9 | TTTGCATAAATATATAAC | ||
| -199 | 3.7 | TTCGCATATGATTTCAAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: argC | ||||
| Ortholog function: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) | ||||
| Shewanella oneidensis MR-1 | SO_0275 | -327 | 3.6 | ATTGAAATATTAAGTAGT |
| -249 | 4 | TAAAAATATATATTCACA | ||
| -127 | 3.7 | AGTGAATAAAATAACAAG | ||
| Shewanella putrefaciens CN-32 | Sputcn32_3717 | -192 | 4.2 | TATGAAAATAAATTAAAA |
| -57 | 3.8 | AGTGAATAAAATAACAAC | ||
| Shewanella sp W3-18-1 | Sputw3181_3860 | -193 | 4.2 | TATGAAAATAAATTAAAA |
| -180 | 4 | TAAAAATATATATTCACA | ||
| -57 | 4 | AGTGAATAAAATAACAAT | ||
| Shewanella sp ANA-3 | Shewana3_3905 | -357 | 3.7 | ACTGATTTTTCAGTCTTT |
| -327 | 4.4 | ACTGAGTTATTAAGCAGT | ||
| -249 | 4 | TAAAAATATATATTCACA | ||
| Shewanella sp MR-4 | Shewmr4_3709 | -327 | 4.4 | ACTGAGTTATTAAGCAGT |
| -249 | 4 | TAAAAATATATATTCACA | ||
| Shewanella sp MR-7 | Shewmr7_0236 | -327 | 4.4 | ACTGAGTTATTAAGCAGT |
| -249 | 4 | TAAAAATATATATTCACA | ||
| Shewanella baltica OS155 | Sbal_4124 | -471 | 4.2 | ATTCAATATAAATGCGAA |
| -252 | 4 | TAAAAATATATATTCACA | ||
| -130 | 3.8 | AGTGAATAAAATAACAAC | ||
| Shewanella denitrificans OS217 | Sden_0250 | -235 | 4.3 | AATAAATATGTATTCACA |
| -214 | 3.7 | ATTGCATAACAATTTGAT | ||
| -145 | 4.3 | ATCGAATATAAAAGCACA | ||
| Shewanella amazonensis SB2B | Sama_0256 | -241 | 3.7 | AATAGATATTCATGCATA |
| Shewanella loihica PV-4 | Shew_0202 | -249 | 3.7 | TAAAAATATCTATTCAAT |
| -228 | 3.5 | ATTGCATAATTAGTTTGT | ||
| Shewanella pealeana ATCC 700345 | Spea_0227 | -266 | 3.8 | CCCAAATATATATTCAAA |
| Shewanella halifaxensis HAW-EB4 | Shal_4093 | -267 | 4.5 | CCTAAATATATATTCAAA |
| Shewanella piezotolerans WP3 | swp_2055 | -266 | 4.5 | CCTAAATATATATTCAAA |
| Shewanella sediminis HAW-EB3 | Ssed_4276 | -256 | 4 | GTAAAATATATATTCAAA |
| -235 | 3.5 | ATTGCATAATTAGTTTGT | ||
| Shewanella woodyi ATCC 51908 | Swoo_0329 | -423 | 3.5 | TTTGCATTCAAAACCAAG |
| -263 | 4 | GTAAAATATATATTCAAA | ||
|
Position: -159
Score: 3.7 Sequence: ATTGAAATCATATGCGAA
Position: -48
Score: 3.9 Sequence: GTTATATATTTATGCAAA
Position: -38
Score: 3.7 Sequence: TATGCAAATAAAATGAAT
Position: -27
Score: 4.7 Sequence: AATGAATAATTATTTAAA
Locus tag: Patl_0983
|
||||
| Patl_0983 | -159 | 3.7 | ATTGAAATCATATGCGAA | |
| -48 | 3.9 | GTTATATATTTATGCAAA | ||
| -38 | 3.7 | TATGCAAATAAAATGAAT | ||
| -27 | 4.7 | AATGAATAATTATTTAAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: argE | ||||
| Ortholog function: Acetylornithine deacetylase (EC 3.5.1.16) | ||||
| Shewanella amazonensis SB2B | Sama_0255 | -50 | 3.7 | ACTCTTTAATTATGCAAT |
| Shewanella loihica PV-4 | Shew_0201 | -53 | 4.2 | TATGCAATAATATTGAAT |
| Shewanella pealeana ATCC 700345 | Spea_0226 | -27 | 3.8 | TTTGAATATATATTTGGG |
| Shewanella halifaxensis HAW-EB4 | Shal_4094 | -122 | 3.8 | ATTGAACATATATACTCT |
| -26 | 4.5 | TTTGAATATATATTTAGG | ||
| Shewanella piezotolerans WP3 | swp_2054 | -143 | 3.4 | AATACTTAATAATTGAAC |
| -27 | 4.5 | TTTGAATATATATTTAGG | ||
| Shewanella sediminis HAW-EB3 | Ssed_4277 | -48 | 3.5 | ACAAACTAATTATGCAAT |
| -27 | 4 | TTTGAATATATATTTTAC | ||
| Shewanella woodyi ATCC 51908 | Swoo_0328 | -28 | 4 | TTTGAATATATATTTTAC |
|
Position: -44
Score: 3.8 Sequence: TATGTATATATTTACAGT
Locus tag: Patl_1714
|
||||
| Patl_1714 | -44 | 3.8 | TATGTATATATTTACAGT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: recN | ||||
| Ortholog function: DNA repair protein RecN | ||||
| Shewanella oneidensis MR-1 | SO_3462 | -71 | 4.6 | ACTGTATATAAAATCAGT |
| -49 | 3.7 | ACTGTTTATCAATACAGT | ||
| Shewanella putrefaciens CN-32 | Sputcn32_2771 | -71 | 4.6 | ACTGTATATAAAATCAGT |
| -49 | 3.7 | ACTGTTTATCAATACAGT | ||
| Shewanella sp W3-18-1 | Sputw3181_1241 | -71 | 4.6 | ACTGTATATAAAATCAGT |
| -49 | 3.7 | ACTGTTTATCAATACAGT | ||
| Shewanella sp ANA-3 | Shewana3_1104 | -71 | 5.1 | ACTGTATATAAATTCAGT |
| -49 | 3.7 | ACTGTTTATCAATACAGT | ||
| Shewanella sp MR-4 | Shewmr4_1104 | -71 | 5.1 | ACTGTATATAAATTCAGT |
| -49 | 3.7 | ACTGTTTATCAATACAGT | ||
| Shewanella sp MR-7 | Shewmr7_1170 | -71 | 5.1 | ACTGTATATAAATTCAGT |
| -49 | 3.7 | ACTGTTTATCAATACAGT | ||
| Shewanella baltica OS155 | Sbal_3153 | -137 | 3.6 | CATGCATAATCAGTTAAT |
| -71 | 4.6 | ACTGTATATAAAATCAGT | ||
| -49 | 3.7 | ACTGTTTATCAATACAGT | ||
| Shewanella denitrificans OS217 | Sden_1151 | -95 | 3.7 | ACTCAAAATTAACTCAGC |
| -70 | 3.9 | ACTGTATAAAAAACCAGT | ||
| -48 | 3.7 | ACTGTTTATCAATACAGT | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_1043 | -112 | 3.6 | GATGATAAAATAGTCAAC |
| -71 | 4.6 | ACTGTATATAAAATCAGT | ||
| -49 | 3.7 | ACTGTTTATCAATACAGT | ||
| Shewanella amazonensis SB2B | Sama_1026 | -72 | 3.8 | ACTGTACAAAAAATCAGT |
| -50 | 3.7 | ACTGTGTATCAATACAGT | ||
| Shewanella loihica PV-4 | Shew_1196 | -61 | 5.1 | ACTGTATAAAAATTCAGT |
| Shewanella sediminis HAW-EB3 | Ssed_1281 | -61 | 4.6 | ACTGTATATAAAATCAGT |
|
Position: 14
Score: 4.4 Sequence: AGTGAATTTTGATGGACT
Locus tag: Patl_2357
|
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| Patl_2357 | 14 | 4.4 | AGTGAATTTTGATGGACT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: astB | ||||
| Ortholog function: Succinylarginine dihydrolase (EC 3.5.3.23) | ||||
| Shewanella oneidensis MR-1 | SO_2706 | -227 | 4 | AGTCACTTTTTAATCAAA |
| -142 | 3.6 | AAGAAATAGTTATGCATT | ||
| -40 | 4.1 | TTTGAATAAATAATAACC | ||
| Shewanella putrefaciens CN-32 | Sputcn32_2251 | -225 | 4 | AGTCACTTTTTAATCAAA |
| -131 | 4.2 | TATGCATTTATCGTCAAA | ||
| Shewanella sp W3-18-1 | Sputw3181_1757 | -225 | 4 | AGTCACTTTTTAATCAAA |
| -131 | 4.2 | TATGCATTTATCGTCAAA | ||
| Shewanella sp ANA-3 | Shewana3_1728 | -227 | 4 | AGTCACTTTTTAATCAAA |
| -132 | 3.6 | TATGCATTTATCGTGAAA | ||
| -40 | 4.1 | TTTGAATAAATAATAACC | ||
| Shewanella sp MR-4 | Shewmr4_1584 | -227 | 4 | AGTCACTTTTTAATCAAA |
| -142 | 3.6 | AAGAAATAGTTATGCATT | ||
| Shewanella sp MR-7 | Shewmr7_1659 | -227 | 4 | AGTCACTTTTTAATCAAA |
| -142 | 3.6 | AAGAAATAGTTATGCATT | ||
| Shewanella baltica OS155 | Sbal_2497 | -226 | 4 | AGTCACTTTTTAATCAAA |
| -132 | 3.6 | TATGCATTTATCGTGAAA | ||
| -40 | 3.6 | TATGAACAAATAATAACT | ||
| Shewanella denitrificans OS217 | Sden_2329 | -201 | 4.7 | CTTGCATTTTTAATCACT |
| Shewanella frigidimarina NCIMB 400 | Sfri_2479 | -186 | 5 | AGTGCATTTTTAGTCATT |
| Shewanella amazonensis SB2B | Sama_1321 | -233 | 4.1 | AGTCACTTTTTAATCAAT |
| -147 | 3.6 | AAGCAATAGTTATGCAAA | ||
| Shewanella pealeana ATCC 700345 | Spea_1534 | -137 | 5 | TGTGCATTTCAATTCAAA |
| Shewanella halifaxensis HAW-EB4 | Shal_1604 | -169 | 4.1 | ATTTCATTAATAGTCATC |
| -137 | 4.6 | TGTGCATTTTGATGCAAA | ||
| Shewanella piezotolerans WP3 | swp_1743 | -167 | 4 | ATTTCATTATTAGTCATC |
| -135 | 4.6 | TGTGCATTTTGATGCAAA | ||
| Shewanella sediminis HAW-EB3 | Ssed_2842 | -354 | 4 | ATTTCATTATTAGTCATC |
| -322 | 4.3 | TGTGCATTTCGATGCAAA | ||
| Shewanella woodyi ATCC 51908 | Swoo_1802 | -236 | 4 | ATTTCATTATTAGTCATC |
| -204 | 5 | TGTGAATTTCAATGCAAA | ||