Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of ArgR regulog to Pseudoalteromonas atlantica T6c

Reference regulog properties
Source regulog: ArgR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: ArgR
Regulation mode: repressor (activator)
Biological process: Arginine degradation; Arginine biosynthesis
Effector: Arginine
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Pseudoalteromonas atlantica T6c
Orthologous TF(s) Patl_0538
Regulated genes 10
Built upon 502 sites [see more]
Predicted regulatory interactions in Pseudoalteromonas atlantica T6c
Locus tag Position Score Sequence
Position: -331
Score: 4.7
Sequence: TTTAAATAATTATTCATT
Position: -320
Score: 3.7
Sequence: ATTCATTTTATTTGCATA
Position: -310
Score: 3.9
Sequence: TTTGCATAAATATATAAC
Position: -199
Score: 3.7
Sequence: TTCGCATATGATTTCAAT
Locus tag: Patl_0982
Patl_0982 -331 4.7 TTTAAATAATTATTCATT
-320 3.7 ATTCATTTTATTTGCATA
-310 3.9 TTTGCATAAATATATAAC
-199 3.7 TTCGCATATGATTTCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: argC
Ortholog function: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
Shewanella oneidensis MR-1 SO_0275 -327 3.6 ATTGAAATATTAAGTAGT
-249 4 TAAAAATATATATTCACA
-127 3.7 AGTGAATAAAATAACAAG
Shewanella putrefaciens CN-32 Sputcn32_3717 -192 4.2 TATGAAAATAAATTAAAA
-57 3.8 AGTGAATAAAATAACAAC
Shewanella sp W3-18-1 Sputw3181_3860 -193 4.2 TATGAAAATAAATTAAAA
-180 4 TAAAAATATATATTCACA
-57 4 AGTGAATAAAATAACAAT
Shewanella sp ANA-3 Shewana3_3905 -357 3.7 ACTGATTTTTCAGTCTTT
-327 4.4 ACTGAGTTATTAAGCAGT
-249 4 TAAAAATATATATTCACA
Shewanella sp MR-4 Shewmr4_3709 -327 4.4 ACTGAGTTATTAAGCAGT
-249 4 TAAAAATATATATTCACA
Shewanella sp MR-7 Shewmr7_0236 -327 4.4 ACTGAGTTATTAAGCAGT
-249 4 TAAAAATATATATTCACA
Shewanella baltica OS155 Sbal_4124 -471 4.2 ATTCAATATAAATGCGAA
-252 4 TAAAAATATATATTCACA
-130 3.8 AGTGAATAAAATAACAAC
Shewanella denitrificans OS217 Sden_0250 -235 4.3 AATAAATATGTATTCACA
-214 3.7 ATTGCATAACAATTTGAT
-145 4.3 ATCGAATATAAAAGCACA
Shewanella amazonensis SB2B Sama_0256 -241 3.7 AATAGATATTCATGCATA
Shewanella loihica PV-4 Shew_0202 -249 3.7 TAAAAATATCTATTCAAT
-228 3.5 ATTGCATAATTAGTTTGT
Shewanella pealeana ATCC 700345 Spea_0227 -266 3.8 CCCAAATATATATTCAAA
Shewanella halifaxensis HAW-EB4 Shal_4093 -267 4.5 CCTAAATATATATTCAAA
Shewanella piezotolerans WP3 swp_2055 -266 4.5 CCTAAATATATATTCAAA
Shewanella sediminis HAW-EB3 Ssed_4276 -256 4 GTAAAATATATATTCAAA
-235 3.5 ATTGCATAATTAGTTTGT
Shewanella woodyi ATCC 51908 Swoo_0329 -423 3.5 TTTGCATTCAAAACCAAG
-263 4 GTAAAATATATATTCAAA
Position: -159
Score: 3.7
Sequence: ATTGAAATCATATGCGAA
Position: -48
Score: 3.9
Sequence: GTTATATATTTATGCAAA
Position: -38
Score: 3.7
Sequence: TATGCAAATAAAATGAAT
Position: -27
Score: 4.7
Sequence: AATGAATAATTATTTAAA
Locus tag: Patl_0983
Patl_0983 -159 3.7 ATTGAAATCATATGCGAA
-48 3.9 GTTATATATTTATGCAAA
-38 3.7 TATGCAAATAAAATGAAT
-27 4.7 AATGAATAATTATTTAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: argE
Ortholog function: Acetylornithine deacetylase (EC 3.5.1.16)
Shewanella amazonensis SB2B Sama_0255 -50 3.7 ACTCTTTAATTATGCAAT
Shewanella loihica PV-4 Shew_0201 -53 4.2 TATGCAATAATATTGAAT
Shewanella pealeana ATCC 700345 Spea_0226 -27 3.8 TTTGAATATATATTTGGG
Shewanella halifaxensis HAW-EB4 Shal_4094 -122 3.8 ATTGAACATATATACTCT
-26 4.5 TTTGAATATATATTTAGG
Shewanella piezotolerans WP3 swp_2054 -143 3.4 AATACTTAATAATTGAAC
-27 4.5 TTTGAATATATATTTAGG
Shewanella sediminis HAW-EB3 Ssed_4277 -48 3.5 ACAAACTAATTATGCAAT
-27 4 TTTGAATATATATTTTAC
Shewanella woodyi ATCC 51908 Swoo_0328 -28 4 TTTGAATATATATTTTAC
Position: -44
Score: 3.8
Sequence: TATGTATATATTTACAGT
Locus tag: Patl_1714
Patl_1714 -44 3.8 TATGTATATATTTACAGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: recN
Ortholog function: DNA repair protein RecN
Shewanella oneidensis MR-1 SO_3462 -71 4.6 ACTGTATATAAAATCAGT
-49 3.7 ACTGTTTATCAATACAGT
Shewanella putrefaciens CN-32 Sputcn32_2771 -71 4.6 ACTGTATATAAAATCAGT
-49 3.7 ACTGTTTATCAATACAGT
Shewanella sp W3-18-1 Sputw3181_1241 -71 4.6 ACTGTATATAAAATCAGT
-49 3.7 ACTGTTTATCAATACAGT
Shewanella sp ANA-3 Shewana3_1104 -71 5.1 ACTGTATATAAATTCAGT
-49 3.7 ACTGTTTATCAATACAGT
Shewanella sp MR-4 Shewmr4_1104 -71 5.1 ACTGTATATAAATTCAGT
-49 3.7 ACTGTTTATCAATACAGT
Shewanella sp MR-7 Shewmr7_1170 -71 5.1 ACTGTATATAAATTCAGT
-49 3.7 ACTGTTTATCAATACAGT
Shewanella baltica OS155 Sbal_3153 -137 3.6 CATGCATAATCAGTTAAT
-71 4.6 ACTGTATATAAAATCAGT
-49 3.7 ACTGTTTATCAATACAGT
Shewanella denitrificans OS217 Sden_1151 -95 3.7 ACTCAAAATTAACTCAGC
-70 3.9 ACTGTATAAAAAACCAGT
-48 3.7 ACTGTTTATCAATACAGT
Shewanella frigidimarina NCIMB 400 Sfri_1043 -112 3.6 GATGATAAAATAGTCAAC
-71 4.6 ACTGTATATAAAATCAGT
-49 3.7 ACTGTTTATCAATACAGT
Shewanella amazonensis SB2B Sama_1026 -72 3.8 ACTGTACAAAAAATCAGT
-50 3.7 ACTGTGTATCAATACAGT
Shewanella loihica PV-4 Shew_1196 -61 5.1 ACTGTATAAAAATTCAGT
Shewanella sediminis HAW-EB3 Ssed_1281 -61 4.6 ACTGTATATAAAATCAGT
Position: 14
Score: 4.4
Sequence: AGTGAATTTTGATGGACT
Locus tag: Patl_2357
Patl_2357 14 4.4 AGTGAATTTTGATGGACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: astB
Ortholog function: Succinylarginine dihydrolase (EC 3.5.3.23)
Shewanella oneidensis MR-1 SO_2706 -227 4 AGTCACTTTTTAATCAAA
-142 3.6 AAGAAATAGTTATGCATT
-40 4.1 TTTGAATAAATAATAACC
Shewanella putrefaciens CN-32 Sputcn32_2251 -225 4 AGTCACTTTTTAATCAAA
-131 4.2 TATGCATTTATCGTCAAA
Shewanella sp W3-18-1 Sputw3181_1757 -225 4 AGTCACTTTTTAATCAAA
-131 4.2 TATGCATTTATCGTCAAA
Shewanella sp ANA-3 Shewana3_1728 -227 4 AGTCACTTTTTAATCAAA
-132 3.6 TATGCATTTATCGTGAAA
-40 4.1 TTTGAATAAATAATAACC
Shewanella sp MR-4 Shewmr4_1584 -227 4 AGTCACTTTTTAATCAAA
-142 3.6 AAGAAATAGTTATGCATT
Shewanella sp MR-7 Shewmr7_1659 -227 4 AGTCACTTTTTAATCAAA
-142 3.6 AAGAAATAGTTATGCATT
Shewanella baltica OS155 Sbal_2497 -226 4 AGTCACTTTTTAATCAAA
-132 3.6 TATGCATTTATCGTGAAA
-40 3.6 TATGAACAAATAATAACT
Shewanella denitrificans OS217 Sden_2329 -201 4.7 CTTGCATTTTTAATCACT
Shewanella frigidimarina NCIMB 400 Sfri_2479 -186 5 AGTGCATTTTTAGTCATT
Shewanella amazonensis SB2B Sama_1321 -233 4.1 AGTCACTTTTTAATCAAT
-147 3.6 AAGCAATAGTTATGCAAA
Shewanella pealeana ATCC 700345 Spea_1534 -137 5 TGTGCATTTCAATTCAAA
Shewanella halifaxensis HAW-EB4 Shal_1604 -169 4.1 ATTTCATTAATAGTCATC
-137 4.6 TGTGCATTTTGATGCAAA
Shewanella piezotolerans WP3 swp_1743 -167 4 ATTTCATTATTAGTCATC
-135 4.6 TGTGCATTTTGATGCAAA
Shewanella sediminis HAW-EB3 Ssed_2842 -354 4 ATTTCATTATTAGTCATC
-322 4.3 TGTGCATTTCGATGCAAA
Shewanella woodyi ATCC 51908 Swoo_1802 -236 4 ATTTCATTATTAGTCATC
-204 5 TGTGAATTTCAATGCAAA
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