Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of TyrR regulog to Shewanella sp ANA-3

Reference regulog properties
Source regulog: TyrR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: TyrR
Regulation mode: activator
Biological process: Amino acid utilization
Effector: Tyrosine; Phenylalanine
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Shewanella sp ANA-3
Orthologous TF(s) Shewana3_2779
Regulated genes 22
Built upon 312 sites [see more]
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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Predicted regulatory interactions in Shewanella sp ANA-3
Locus tag Position Score Sequence
Position: -179
Score: 4.5
Sequence: GTGTAAATAAAAAGTGGCAT
Locus tag: Shewana3_0294
Shewana3_0294 -179 4.5 GTGTAAATAAAAAGTGGCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: tdo
Ortholog function: tryptophan 2,3-dioxygenase
Shewanella oneidensis MR-1 SO_4414 -175 4.5 GTGTAAATAAAAAGTGGCAT
Shewanella putrefaciens CN-32 Sputcn32_0406 -179 4.5 GTGTAAATAAAAAGTGGCAT
Shewanella sp W3-18-1 Sputw3181_0260 -179 4.5 GTGTAAATAAAAAGTGGCAT
Shewanella sp ANA-3 Shewana3_0294 -179 4.5 GTGTAAATAAAAAGTGGCAT
Shewanella sp MR-4 Shewmr4_0294 -179 4.5 GTGTAAATAAAAAGTGGCAT
Shewanella sp MR-7 Shewmr7_3725 -180 4.5 GTGTAAATAAAAAGTGGCAT
Shewanella baltica OS155 Sbal_0303 -159 4.6 GTGTAAATAAAAAATGGCAT
Shewanella denitrificans OS217 Sden_3451 -122 4.3 TCGGAAGTTAAACTTTACAT
Position: -172
Score: 4.2
Sequence: ATGGTAATTTTTAGTTACAA
Locus tag: Shewana3_0759
Shewana3_0759 -172 4.2 ATGGTAATTTTTAGTTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pep3
Ortholog function: peptidase, M13 family
Shewanella oneidensis MR-1 SO_3844 -173 4.2 ATGGTAATTTTTAGTTACAA
Shewanella putrefaciens CN-32 Sputcn32_0791 -276 3.6 ATGTTAAGTTTATTTGCCTT
Shewanella sp W3-18-1 Sputw3181_3384 -276 3.6 ATGTTAAGTTTATTTGCCTT
Shewanella sp ANA-3 Shewana3_0759 -172 4.2 ATGGTAATTTTTAGTTACAA
Shewanella sp MR-4 Shewmr4_3179 -173 4.2 ATGGTAATTTTTAGTTACAA
Shewanella sp MR-7 Shewmr7_0787 -172 4.2 ATGGTAATTTTTAGTTACAA
Shewanella baltica OS155 Sbal_0685 -173 4 CTGGTAACCTTTAGTTACAT
Shewanella denitrificans OS217 Sden_1089 -224 3.8 TTGGTTACATAAATTGCCAG
Shewanella loihica PV-4 Shew_2973 -180 4.1 GAGGAAATCTTTACTTACAT
Shewanella pealeana ATCC 700345 Spea_3177 -237 3.8 TGGGAAACCTTTTCTTACAC
Shewanella halifaxensis HAW-EB4 Shal_3258 -202 3.9 TAGGAAACCTTTTCTTACAC
Shewanella piezotolerans WP3 swp_3866 -189 3.9 TAGGAAACCTTTTCTTACAC
Shewanella sediminis HAW-EB3 Ssed_3509 -218 4 AAGGAAACCTTTACTTACAC
Shewanella woodyi ATCC 51908 Swoo_0911 -178 3.7 AAGGAAACCTTTTCTTACAT
Position: -197
Score: 4.6
Sequence: TTGTCAATTGAGCGTTACAT
Locus tag: Shewana3_0819
Shewana3_0819 -197 4.6 TTGTCAATTGAGCGTTACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: putA
Ortholog function: Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)
Shewanella oneidensis MR-1 SO_3774 -212 4.8 TTGTCAATCAAGCGTTACAT
Shewanella putrefaciens CN-32 Sputcn32_3099 -194 4.8 TTGTCAATTAAGCGTTACAT
Shewanella sp W3-18-1 Sputw3181_0845 -194 4.8 TTGTCAATTAAGCGTTACAT
Shewanella sp ANA-3 Shewana3_0819 -197 4.6 TTGTCAATTGAGCGTTACAT
Shewanella sp MR-4 Shewmr4_3122 -198 4.6 TTGTCAATTGAGCGTTACAT
Shewanella sp MR-7 Shewmr7_0850 -197 4.6 TTGTCAATTGAGCGTTACAT
Shewanella baltica OS155 Sbal_3458 -194 4.8 TTGTCAATCAAGCGTTACAT
Shewanella amazonensis SB2B Sama_2676 -219 4 TTGTCAAGTGGGCGTTACGC
Shewanella sediminis HAW-EB3 Ssed_3846 -109 4 TTGTATACAAAAAATAACAA
Position: -13
Score: 4
Sequence: ATGGAAGAAAAACATGACAA
Locus tag: Shewana3_1443
Shewana3_1443 -13 4 ATGGAAGAAAAACATGACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: aprE
Ortholog function: Alkaline serine protease
Shewanella sp ANA-3 Shewana3_1443 -357 3.9 TTTGAAATTATTCATTCCAA
Shewanella sp MR-4 Shewmr4_1390 -357 3.9 TTTGAAATTAATCATTCCAA
Shewanella sp MR-7 Shewmr7_1455 -357 3.9 TTTGAAATTAATCATTCCAA
Shewanella denitrificans OS217 Sden_1409 -105 4.1 GCGTATATAAATGGTTACAT
Shewanella frigidimarina NCIMB 400 Sfri_2692 -333 4.7 CTGCAAAAATATCTTTACAC
Shewanella piezotolerans WP3 swp_3159 -171 4 ACGTAAAGAAATCTGTCCAC
Position: -105
Score: 4.6
Sequence: GTGGCAACAAGAATTGACAA
Locus tag: Shewana3_1673
Shewana3_1673 -105 4.6 GTGGCAACAAGAATTGACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: liuR
Ortholog function: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Shewanella oneidensis MR-1 SO_1898 -105 4.6 GTGGCAACAAGAATTGACAA
Shewanella putrefaciens CN-32 Sputcn32_1720 -108 4.5 ATGGCAATTGGGATTGACAC
Shewanella sp W3-18-1 Sputw3181_2305 -108 4.5 ATGGCAATTGGGATTGACAC
Shewanella sp ANA-3 Shewana3_1673 -105 4.6 GTGGCAACAAGAATTGACAA
Shewanella sp MR-4 Shewmr4_2321 -105 4.6 GTGGCAACAAGAATTGACAA
Shewanella sp MR-7 Shewmr7_2393 -105 4.6 GTGGCAACAAGAATTGACAA
Shewanella baltica OS155 Sbal_2827 -108 4.5 ATGGCAATTGGGATTGACAC
Shewanella denitrificans OS217 Sden_2244 -117 4.2 GTGGAAACAGAATTTAACAC
Shewanella frigidimarina NCIMB 400 Sfri_2726 -117 4.7 GTGGCAAGCAAAATTAACAC
Shewanella amazonensis SB2B Sama_1363 -123 4.2 CTGTAAGCTAAGCCTGACAC
Shewanella pealeana ATCC 700345 Spea_2796 -111 4.4 GTGGCAAGCGCAATTGACAT
Shewanella halifaxensis HAW-EB4 Shal_2901 -110 4.4 GTGGCAAGCGCGATTGACAT
Shewanella piezotolerans WP3 swp_3441 -76 4.2 TTGGCACGCACAATTGACAT
Shewanella woodyi ATCC 51908 Swoo_3222 -129 4.5 CTGGAAAACTTACTTGCCAT
Position: -154
Score: 5.2
Sequence: GTGGAAAGCTAGATTGCCAC
Locus tag: Shewana3_1742
Shewana3_1742 -154 5.2 GTGGAAAGCTAGATTGCCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: ldh
Ortholog function: Leucine dehydrogenase (EC 1.4.1.9)
Shewanella oneidensis MR-1 SO_2638 -154 5.2 GTGGAAAGCTAGATTGCCAC
Shewanella putrefaciens CN-32 Sputcn32_2238 -155 5.2 GTGGAAAGCTAAATTGCCAC
Shewanella sp W3-18-1 Sputw3181_1771 -155 5.2 GTGGAAAGCTAAATTGCCAC
Shewanella sp ANA-3 Shewana3_1742 -154 5.2 GTGGAAAGCTAGATTGCCAC
Shewanella sp MR-4 Shewmr4_1598 -154 5.2 GTGGAAAGCTAGATTGCCAC
Shewanella sp MR-7 Shewmr7_1673 -154 5.2 GTGGAAAGCTAGATTGCCAC
Shewanella baltica OS155 Sbal_2483 -134 5.2 GTGGAAAGCTAAATTGCCAC
Shewanella denitrificans OS217 Sden_1823 -140 4.9 GTGGCAAGCAAAATTGCCAC
Shewanella frigidimarina NCIMB 400 Sfri_2265 -178 5.2 GTGGCAAGCTAAATTTCCAC
Shewanella amazonensis SB2B Sama_2067 -147 5.1 GTGGAAAGCAAAATTGCCAC
Shewanella loihica PV-4 Shew_1555 -157 5.1 GTGGAAAGCAAAATTGCCAC
Shewanella pealeana ATCC 700345 Spea_2543 -157 4.9 GTGGAAAGCAAAATTGCCAG
Shewanella halifaxensis HAW-EB4 Shal_1711 -157 4.9 GTGGAAAGCAAAATTGCCAG
Shewanella piezotolerans WP3 swp_1857 -158 4.8 GTGGAAAGCAGAATTGCCAC
Shewanella sediminis HAW-EB3 Ssed_1877 -156 5.2 GTGGAAAGCTAAATTGCCAC
Shewanella woodyi ATCC 51908 Swoo_2710 -157 5.1 GTGGAAAGCAAAATTGCCAC
Position: -155
Score: 3.9
Sequence: TTGGCAGGCTTTTTTGCCAG
Locus tag: Shewana3_1974
Shewana3_1974 -155 3.9 TTGGCAGGCTTTTTTGCCAG
Supported by regulated orthologs from reference regulons