Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of NtrC regulog to Shewanella sp ANA-3

Reference regulog properties
Source regulog: NtrC - Shewanellaceae
Regulator type: Transcription factor
Regulator family: Fis
Regulation mode: activator
Biological process: Nitrogen assimilation
Effector: Phosphorylated NtrB, signal histidine kinase
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Shewanella sp ANA-3
Orthologous TF(s) Shewana3_0258
Regulated genes 4
Built upon 94 sites [see more]
Predicted regulatory interactions in Shewanella sp ANA-3
Locus tag Position Score Sequence
Position: -52
Score: 6
Sequence: TGCACCAAATCGGTGCA
Locus tag: Shewana3_0259
Shewana3_0259 -52 6 TGCACCAAATCGGTGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ntrB
Ortholog function: nitrogen regulation protein
Shewanella oneidensis MR-1 SO_4471 -52 6 TGCACCAAATCGGTGCA
-39 4.9 TGCAACATAAGGGTGCA
Shewanella putrefaciens CN-32 Sputcn32_0372 -52 6 TGCACCAAATCGGTGCA
-39 5 TGCATCATGTTGATGCA
Shewanella sp W3-18-1 Sputw3181_0222 -52 6 TGCACCAAATCGGTGCA
-39 5 TGCATCATGTTGATGCA
Shewanella sp ANA-3 Shewana3_0259 -52 6 TGCACCAAATCGGTGCA
-39 5.5 TGCAACATAATGGTGCA
Shewanella sp MR-4 Shewmr4_0258 -52 6 TGCACCAAATCGGTGCA
-39 5.5 TGCAACATAATGGTGCA
Shewanella sp MR-7 Shewmr7_3763 -52 6 TGCACCAAATCGGTGCA
-39 5.5 TGCAACATAATGGTGCA
Shewanella baltica OS155 Sbal_0267 -52 5.5 TGCACCAGATTGGCGCA
-39 5.8 CGCACCATAGTGGTGCA
Shewanella denitrificans OS217 Sden_3457 -79 6 TGCACCATAGTGGTGCA
-52 5.8 TGCACCACAATGGTGCG
Shewanella frigidimarina NCIMB 400 Sfri_0321 -50 6.1 CGCACCAAATTGGTGCA
-37 5.7 TGCATCATAATGGTGCA
Shewanella amazonensis SB2B Sama_3426 -51 6.3 TGCACCATATTGGTGCA
-38 6.3 TGCACCATATTGGTGCA
Shewanella loihica PV-4 Shew_3560 -52 6.3 TGCACCAAATTGGTGCA
-39 6.2 TGCACCATTATGGTGCA
Shewanella pealeana ATCC 700345 Spea_3929 -79 6 TGCACCATTTCGGTGCA
Shewanella halifaxensis HAW-EB4 Shal_0342 -79 6 TGCACCACTTTGGTGCA
-66 5.8 TGCACCATAGTGGTGCG
Shewanella piezotolerans WP3 swp_0250 -79 6.1 CGCACCATTTTGGTGCA
-66 6 TGCACCATAGTGGTGCA
-39 4.8 CGTTCCAAAATGGTGCA
Shewanella sediminis HAW-EB3 Ssed_0283 -51 6.3 TGCACCAATTTGGTGCA
-38 6 TGCACCATGATGGTGCA
Shewanella woodyi ATCC 51908 Swoo_4650 -51 5.6 TGCACTAGTTTGGTGCA
-38 6.2 TGCACCATAATGGTGCA
Position: -180
Score: 5.6
Sequence: CGCACCAATATAGTGCA
Locus tag: Shewana3_0300
Shewana3_0300 -180 5.6 CGCACCAATATAGTGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnA
Ortholog function: glutamine synthetase, type I
Shewanella oneidensis MR-1 SO_4410 -246 4.6 TGCACTAAAATGGGGGA
-179 5.4 TGCACCAACACAGTGCA
Shewanella putrefaciens CN-32 Sputcn32_0412 -184 5.4 CGCACCATCATAGTGCA
Shewanella sp W3-18-1 Sputw3181_0266 -184 5.6 CGCACCATTATAGTGCA
Shewanella sp ANA-3 Shewana3_0300 -247 4.6 TGCACTAAAATGGTGTT
-180 5.6 CGCACCAATATAGTGCA
Shewanella sp MR-4 Shewmr4_0305 -247 4.6 TGCACTAAAATGGTGTT
-180 5.8 AGCACCAATATGGTGCA
Shewanella sp MR-7 Shewmr7_3719 -183 5.6 AGCACCAACATGGTGCA
Shewanella baltica OS155 Sbal_0306 -183 5.5 AGCACCATAGTGGTGCA
Shewanella denitrificans OS217 Sden_3454 -251 5.7 TGCACCATAACGGTGCG
-228 5 TGCACCATTATGGTGAT
Shewanella frigidimarina NCIMB 400 Sfri_0325 -197 5.4 TGCACGAGGTTGGTGCA
Shewanella amazonensis SB2B Sama_3416 -244 4.9 TGCACCTTTATCATGCA
-214 5.1 CGCACCAACATTGTGCG
-192 5.5 TGCCCCGATTTGGTGCA
Shewanella loihica PV-4 Shew_3554 -217 5.4 CGCACCATATTGGTGAA
-178 5.9 TGCACCTTTATGGTGCA
Shewanella pealeana ATCC 700345 Spea_3916 -202 4.7 TGCACCATATAGATCCA
-180 5.8 CGCACCAAAATGGTGCG
Shewanella halifaxensis HAW-EB4 Shal_0353 -180 5.4 CGCACCAAAATAGTGCG
Shewanella piezotolerans WP3 swp_0268 -218 4.7 TGCACGATTATGAAGCA
-201 4.8 CGCACCAAAATGATCCA
-179 4.9 CGCACCATTAGAGTGCA
Shewanella sediminis HAW-EB3 Ssed_0292 -227 4.7 CGCACCAGCTTGGTGAG
-188 5.5 CGCACCAACTTAGTGCA
Shewanella woodyi ATCC 51908 Swoo_4643 -216 4.7 CGCACCAGGATGGTGAG
-199 5 CGCACCATTATCGGGCA
-177 5.4 CGCACCAAACTAGTGCA
Position: -182
Score: 4.8
Sequence: TGCACCATCACAGCGCA
Position: -169
Score: 5
Sequence: CGCACCAAATCGGGGCG
Locus tag: Shewana3_0779
Shewana3_0779 -182 4.8 TGCACCATCACAGCGCA
-169 5 CGCACCAAATCGGGGCG
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnK2
Ortholog function: nitrogen regulatory protein P-II
Shewanella oneidensis MR-1 SO_3819 -181 5.3 TGCACCAAAATCGCGCA
-168 4.8 CGCACCAAATCAGGGCA
Shewanella putrefaciens CN-32 Sputcn32_0815 -109 4.6 TGCACTGAAATAATGCA
-96 5.7 TGCACCTGTATGGTGCA
Shewanella sp W3-18-1 Sputw3181_3358 -109 5 TGCACCGAAATAATGCA
-96 5.4 TGCACCTATATGGAGCA
Shewanella sp ANA-3 Shewana3_0779 -182 4.8 TGCACCATCACAGCGCA
-169 5 CGCACCAAATCGGGGCG
Shewanella sp MR-4 Shewmr4_3159 -182 4.8 TGCACCATCACAGCGCA
-169 5 CGCACCAAATCGGGGCG
Shewanella sp MR-7 Shewmr7_0808 -169 5 CGCACCAAATCGGGGCG
Shewanella baltica OS155 Sbal_0707 -168 4.6 CGCACCAAATCAGGGCG
Shewanella woodyi ATCC 51908 Swoo_1181 -140 5.2 TGCACCATGGTGATGCA
Position: -143
Score: 5.2
Sequence: TGCACAAGTCTGGTGCA
Locus tag: Shewana3_3532
Shewana3_3532 -143 5.2 TGCACAAGTCTGGTGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnB
Ortholog function: nitrogen regulatory protein P-II 1
Shewanella oneidensis MR-1 SO_0761 -142 5.5 TGCACAATTCTGGTGCA
Shewanella putrefaciens CN-32 Sputcn32_3241 -143 5.5 TGCACAAATGTGGTGCA
Shewanella sp W3-18-1 Sputw3181_0700 -143 5.5 TGCACAAATGTGGTGCA
Shewanella sp ANA-3 Shewana3_3532 -143 5.2 TGCACAAGTCTGGTGCA
Shewanella sp MR-4 Shewmr4_3362 -143 5.2 TGCACAAGTCTGGTGCA
Shewanella sp MR-7 Shewmr7_0591 -143 5.2 TGCACAAGTCTGGTGCA
Shewanella baltica OS155 Sbal_0797 -144 5.1 TGCTCGATCATGGTGCA
Shewanella denitrificans OS217 Sden_2905 -195 5.2 TGCGCCACTTAGGTGCA
-152 5.7 CGCACCTTATTGGTGCA
Shewanella frigidimarina NCIMB 400 Sfri_0623 -183 5.4 TGCACCAAAACGATGCA
Shewanella amazonensis SB2B Sama_0650 -172 5.6 TGCACCACCTTGGTGCG
-142 4.7 TGCACTTTTTTTGTGCG
Shewanella loihica PV-4 Shew_0846 -172 4.5 TGCGCTATTTTTGTGCG
-142 5.8 CGCACCTAATTGGTGCA
Shewanella pealeana ATCC 700345 Spea_0833 -135 5.5 TGCACCTTGCTGGTGCA
Shewanella halifaxensis HAW-EB4 Shal_0888 -137 4.7 CGCACTCGAATGGTGCA
Shewanella piezotolerans WP3 swp_3956 -136 5.4 TGCACCCGATTGGTGCA
Shewanella sediminis HAW-EB3 Ssed_0933 -151 5.1 CGCACTTGTTTGGTGCA
Shewanella woodyi ATCC 51908 Swoo_0979 -173 4.6 TGCGCTAATTCCGTGCA
-143 5.4 CGCACCTTAATGGTGCG
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