Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of NagR regulog to Shewanella sp ANA-3

Reference regulog properties
Source regulog: NagR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode: repressor
Biological process: N-acetylglucosamine utilization
Effector: N-acetylglucosamine
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Shewanella sp ANA-3
Orthologous TF(s) Shewana3_3122
Regulated genes 8
Built upon 105 sites [see more]
Predicted regulatory interactions in Shewanella sp ANA-3
Locus tag Position Score Sequence
Position: -214
Score: 6.6
Sequence: AATGACAACGTTGTCATT
Locus tag: Shewana3_2984
Shewana3_2984 -214 6.6 AATGACAACGTTGTCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: chiA
Ortholog function: Chitinase (EC 3.2.1.14)
Shewanella sp ANA-3 Shewana3_2984 -214 6.6 AATGACAACGTTGTCATT
Shewanella sp MR-4 Shewmr4_2805 -212 6.6 AATGACAACGTTGTCATT
Shewanella sp MR-7 Shewmr7_2888 -212 6.6 AATGACAACGTTGTCATT
Shewanella baltica OS155 Sbal_3083 -221 6.6 AATGACAACGTTGTCATT
Shewanella denitrificans OS217 Sden_2136 -212 6.4 AATGACAACGCTGTCATT
Shewanella piezotolerans WP3 swp_0647 -249 6.4 AATGACAACGCTGTCATT
Shewanella woodyi ATCC 51908 Swoo_1100 -306 6.4 GATGACAGCGTTGTCATC
Position: -177
Score: 6.1
Sequence: AATGACAGCGTTGTCTTT
Locus tag: Shewana3_3110
Shewana3_3110 -177 6.1 AATGACAGCGTTGTCTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nagP
Ortholog function: N-acetylglucosamine transporter, NagP
Shewanella oneidensis MR-1 SO_3503 -175 6.1 AATGACAGCGTTGTCTTT
Shewanella putrefaciens CN-32 Sputcn32_1080 -179 6.1 AATGACAGCGTTGTCTTT
Shewanella sp W3-18-1 Sputw3181_3084 -179 6.1 AATGACAGCGTTGTCTTT
Shewanella sp ANA-3 Shewana3_3110 -177 6.1 AATGACAGCGTTGTCTTT
Shewanella sp MR-4 Shewmr4_2931 -178 6.1 AATGACAGCGTTGTCTTT
Shewanella sp MR-7 Shewmr7_3013 -178 6.1 AATGACAGCGTTGTCTTT
Shewanella baltica OS155 Sbal_1088 -179 6.1 AATGACAGCGTTGTCTTT
Shewanella denitrificans OS217 Sden_2702 -138 5.6 AATGACAGCGTTGTCTTA
Shewanella amazonensis SB2B Sama_0948 -167 6.1 AATGACAGCGTTGTCTTT
Shewanella loihica PV-4 Shew_1119 -186 6.1 AATGACAGCGTTGTCTTT
Shewanella pealeana ATCC 700345 Spea_1104 -198 6.1 AATGACAGCGTTGTCTTT
Shewanella halifaxensis HAW-EB4 Shal_1152 -199 6.1 AATGACAGCGTTGTCTTT
Shewanella piezotolerans WP3 swp_3698 -177 6.1 AATGACAGCGTTGTCTTT
Shewanella sediminis HAW-EB3 Ssed_1215 -168 6.1 AATGACAGCGTTGTCTTT
Shewanella woodyi ATCC 51908 Swoo_1315 -172 6.1 AATGACAGCGTTGTCTTT
Position: -114
Score: 6.4
Sequence: AATGACAACGCTGTCATT
Locus tag: Shewana3_3114
Shewana3_3114 -114 6.4 AATGACAACGCTGTCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nagK
Ortholog function: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)
Shewanella oneidensis MR-1 SO_3507 -115 6.4 AATGACAACGCTGTCATT
Shewanella putrefaciens CN-32 Sputcn32_1076 -90 6.4 AATGACAACGCTGTCATC
Shewanella sp W3-18-1 Sputw3181_3089 -90 6.4 AATGACAACGCTGTCATC
Shewanella sp ANA-3 Shewana3_3114 -114 6.4 AATGACAACGCTGTCATT
Shewanella sp MR-4 Shewmr4_2935 -114 6.4 AATGACAACGCTGTCATT
Shewanella sp MR-7 Shewmr7_3017 -114 6.4 AATGACAACGCTGTCATT
Shewanella baltica OS155 Sbal_1084 -113 6.4 AATGACAACGCTGTCATT
Shewanella denitrificans OS217 Sden_2706 -101 6.4 AATGACAACGCTGTCATT
Shewanella amazonensis SB2B Sama_0944 -105 6.4 AATGACAACGCTGTCATT
Shewanella loihica PV-4 Shew_1116 -106 6.4 AATGACAGCGTTGTCATT
Shewanella pealeana ATCC 700345 Spea_1101 -123 6.4 AATGACAACGCTGTCATT
Shewanella halifaxensis HAW-EB4 Shal_1149 -124 6.4 AATGACAACGCTGTCATT
Shewanella piezotolerans WP3 swp_3703 -106 6.4 AATGACAACGCTGTCATT
Shewanella sediminis HAW-EB3 Ssed_1212 -106 6.4 AATGACAACGCTGTCATT
Shewanella woodyi ATCC 51908 Swoo_1312 -108 6.4 AATGACAACGCTGTCATT
Position: -294
Score: 6.4
Sequence: AATGACAACGCTGTCATC
Locus tag: Shewana3_3117
Shewana3_3117 -294 6.4 AATGACAACGCTGTCATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: pilM
Ortholog function: homolog of type IV pilus assembly protein PilM
Shewanella sp ANA-3 Shewana3_3117 -294 6.4 AATGACAACGCTGTCATC
Shewanella sp MR-4 Shewmr4_2938 -294 6.4 AATGACAACGCTGTCATC
Shewanella sp MR-7 Shewmr7_3020 -294 6.4 AATGACAACGCTGTCATC
Shewanella baltica OS155 Sbal_1081 -304 6.4 AATGACAACGCTGTCATC
Shewanella amazonensis SB2B Sama_0941 -282 6.4 AATGACAGCGTTGTCATT
Shewanella piezotolerans WP3 swp_3707 -277 5.9 TATGACAGCGTTGTCATC
Shewanella woodyi ATCC 51908 Swoo_1309 -311 6.4 AATGACAGCGTTGTCATC
Position: -212
Score: 6.4
Sequence: GATGACAGCGTTGTCATT
Position: -66
Score: 5.2
Sequence: TGTGACAACGCTGTCTTT
Locus tag: Shewana3_3118
Shewana3_3118 -212 6.4 GATGACAGCGTTGTCATT
-66 5.2 TGTGACAACGCTGTCTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: duf81
Ortholog function: protein of unknown function DUF81
Shewanella sp ANA-3 Shewana3_3118 -66 5.2 TGTGACAACGCTGTCTTT
Shewanella sp MR-4 Shewmr4_2939 -68 5 TGTGACAACGCTGTCCTT
Shewanella sp MR-7 Shewmr7_3021 -68 5.2 TGTGACAACGCTGTCTTT
Shewanella baltica OS155 Sbal_1080 -210 6.4 GATGACAGCGTTGTCATT
-64 5.4 TGTGACAACGTTGTCTTT
Shewanella piezotolerans WP3 swp_3708 -129 5.4 AATGACAACGCTGTCTAA
Shewanella woodyi ATCC 51908 Swoo_1308 -92 5.7 TATGACAACGCTGTCAAT
Position: -74
Score: 6.2
Sequence: CATGACAGCGTTGTCATT
Locus tag: Shewana3_3121
Shewana3_3121 -74 6.2 CATGACAGCGTTGTCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: omp_nag
Ortholog function: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor
Shewanella sp ANA-3 Shewana3_3121 -74 6.2 CATGACAGCGTTGTCATT
Shewanella sp MR-4 Shewmr4_2942 -74 6.2 CATGACAGCGTTGTCATT
Shewanella denitrificans OS217 Sden_2708 -76 6.2 CATGACAGCGTTGTCATT
Shewanella amazonensis SB2B Sama_0938 -75 6.2 CATGACAGCGTTGTCATT
Shewanella woodyi ATCC 51908 Swoo_1305 -34 6.2 CATGACAGCGTTGTCATT
Position: -96
Score: 5.1
Sequence: GCTGACAACGCTGTCGGC
Locus tag: Shewana3_3122
Shewana3_3122 -96 5.1 GCTGACAACGCTGTCGGC
Supported by regulated orthologs from reference regulons
Ortholog gene name: nagR
Ortholog function: Transcriptional regulator of N-acetylglucosamine utilization, LacI family
Shewanella sp ANA-3 Shewana3_3122 -96 5.1 GCTGACAACGCTGTCGGC
Shewanella sp MR-4 Shewmr4_2943 -96 5.1 GCTGACAACGCTGTCGGC
Shewanella sp MR-7 Shewmr7_3025 -96 5.1 GCTGACAACGCTGTCGGC
Shewanella denitrificans OS217 Sden_2709 -301 6.2 AATGACAACGCTGTCATG
Position: -91
Score: 5.4
Sequence: TATGACAACGTTGTCAAA
Locus tag: Shewana3_3424
Shewana3_3424 -91 5.4 TATGACAACGTTGTCAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO0854
Ortholog function: Type IV pilus biogenesis protein PilE
Shewanella oneidensis MR-1 SO_0854 -83 5.7 CATGACAACGTTGTCAAA
Shewanella sp ANA-3 Shewana3_3424 -91 5.4 TATGACAACGTTGTCAAA
Shewanella sp MR-4 Shewmr4_0710 -91 5.4 TATGACAACGTTGTCAAA
Shewanella sp MR-7 Shewmr7_3312 -91 5.4 TATGACAACGTTGTCAAA