Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of MalR regulog to Shewanella sp ANA-3

Reference regulog properties
Source regulog: MalR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode: repressor
Biological process: Maltodextrin utilization
Effector: Maltose
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Shewanella sp ANA-3
Orthologous TF(s) Shewana3_2252
Regulated genes 3
Built upon 67 sites [see more]
Predicted regulatory interactions in Shewanella sp ANA-3
Locus tag Position Score Sequence
Position: -90
Score: 6
Sequence: GGTGAATACGTATGCAAA
Locus tag: Shewana3_1931
Shewana3_1931 -90 6 GGTGAATACGTATGCAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: susB
Ortholog function: Alpha-glucosidase (EC 3.2.1.20)
Shewanella oneidensis MR-1 SO_2450 -90 5.4 GTGGAATACGTATGCAAG
Shewanella sp ANA-3 Shewana3_1931 -90 6 GGTGAATACGTATGCAAA
Shewanella sp MR-4 Shewmr4_1876 -90 6 GGTGAATACGTATGCAAA
Shewanella sp MR-7 Shewmr7_2102 -90 6 GGTGAATACGTATGCAAA
Shewanella baltica OS155 Sbal_2329 -90 5.9 GGTGAATACGTATGCAGG
Shewanella denitrificans OS217 Sden_2002 -100 5.7 CCTGAATACGTATGTAGT
Shewanella frigidimarina NCIMB 400 Sfri_1777 -92 6.1 ACTGAATACGTATGCAAA
Shewanella amazonensis SB2B Sama_1108 -89 6 GCTGAATACGTATGCAGC
Shewanella loihica PV-4 Shew_1876 -164 5.9 GGTGAATACGTATGCAGC
Shewanella piezotolerans WP3 swp_2676 -111 6.1 TTTGAATACGTATGCAAG
Position: -312
Score: 6.1
Sequence: TGTGCATACGTATTCAAT
Position: -163
Score: 6.2
Sequence: TTTGCATACGTATGCAGG
Locus tag: Shewana3_2311
Shewana3_2311 -312 6.1 TGTGCATACGTATTCAAT
-163 6.2 TTTGCATACGTATGCAGG
Supported by regulated orthologs from reference regulons
Ortholog gene name: malZ
Ortholog function: Maltodextrin glucosidase (EC 3.2.1.20)
Shewanella sp ANA-3 Shewana3_2311 -312 6.1 TGTGCATACGTATTCAAT
-163 6.2 TTTGCATACGTATGCAGG
Shewanella sp MR-4 Shewmr4_2133 -312 6.1 TGTGCATACGTATTCAAT
-163 6.2 TTTGCATACGTATGCAGG
Shewanella sp MR-7 Shewmr7_2209 -312 6.1 TGTGCATACGTATTCAAT
-163 6.2 TTTGCATACGTATGCAGG
Shewanella baltica OS155 Sbal_2287 -312 6 AGTGCATACGTATTCAAT
-163 6.2 TCTGCATACGTATGCAGG
Shewanella denitrificans OS217 Sden_2028 -292 6.1 TATGCATACGTATTCAAT
-143 6.2 TTTGCATACGTATGCAGT
Shewanella frigidimarina NCIMB 400 Sfri_1788 -296 6 TATGCATACGTATTCAAC
-147 6.2 TTTGCATACGTATGCAGG
Shewanella amazonensis SB2B Sama_1662 -317 6.1 AGTGCATACGTATTCAAA
-167 6.1 TGTGCATACGTATGCAGC
Shewanella loihica PV-4 Shew_1889 -311 6.1 TATGCATACGTATTCAAA
-160 6.2 TTTGCATACGTATGCAGT
Shewanella piezotolerans WP3 swp_2670 -303 6.1 TATGCATACGTATTCAAT
-154 5.9 ATTACATACGTATGCAGA
Shewanella woodyi ATCC 51908 Swoo_2210 -198 6.1 TATGCATACGTATTCAAA
-47 6.2 TATGCATACGTATGCAGA
Position: -204
Score: 6.1
Sequence: ATTGAATACGTATGCACA
Locus tag: Shewana3_2312
Shewana3_2312 -204 6.1 ATTGAATACGTATGCACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: omp(Mal)
Ortholog function: Predicted maltose-specific TonB-dependent receptor
Shewanella oneidensis MR-1 SO_2162 -351 6.2 CCTGCATACGTATGCAAA
-202 6.1 ATTGAATACGTATGCACA
Shewanella sp ANA-3 Shewana3_2312 -353 6.2 CCTGCATACGTATGCAAA
-204 6.1 ATTGAATACGTATGCACA
Shewanella sp MR-4 Shewmr4_2134 -353 6.2 CCTGCATACGTATGCAAA
-204 6.1 ATTGAATACGTATGCACA
Shewanella sp MR-7 Shewmr7_2210 -353 6.2 CCTGCATACGTATGCAAA
-204 6.1 ATTGAATACGTATGCACA
Shewanella baltica OS155 Sbal_2288 -350 6.2 CCTGCATACGTATGCAGA
-201 6 ATTGAATACGTATGCACT
Shewanella amazonensis SB2B Sama_1661 -356 6.1 GCTGCATACGTATGCACA
-206 6.1 TTTGAATACGTATGCACT
Shewanella loihica PV-4 Shew_1888 -343 6.2 ACTGCATACGTATGCAAA
-192 6.1 TTTGAATACGTATGCATA
Shewanella piezotolerans WP3 swp_2671 -336 5.9 TCTGCATACGTATGTAAT
-187 6.1 ATTGAATACGTATGCATA
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