Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of NtrC regulog to Psychromonas ingrahamii 37

Reference regulog properties
Source regulog: NtrC - Shewanellaceae
Regulator type: Transcription factor
Regulator family: Fis
Regulation mode: activator
Biological process: Nitrogen assimilation
Effector: Phosphorylated NtrB, signal histidine kinase
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Psychromonas ingrahamii 37
Orthologous TF(s) Ping_3488
Regulated genes 2
Built upon 94 sites [see more]
Predicted regulatory interactions in Psychromonas ingrahamii 37
Locus tag Position Score Sequence
Position: -175
Score: 5.5
Sequence: TGCACTTTTTTGGTGCA
Locus tag: Ping_3026
Ping_3026 -175 5.5 TGCACTTTTTTGGTGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnB
Ortholog function: nitrogen regulatory protein P-II 1
Shewanella oneidensis MR-1 SO_0761 -142 5.5 TGCACAATTCTGGTGCA
Shewanella putrefaciens CN-32 Sputcn32_3241 -143 5.5 TGCACAAATGTGGTGCA
Shewanella sp W3-18-1 Sputw3181_0700 -143 5.5 TGCACAAATGTGGTGCA
Shewanella sp ANA-3 Shewana3_3532 -143 5.2 TGCACAAGTCTGGTGCA
Shewanella sp MR-4 Shewmr4_3362 -143 5.2 TGCACAAGTCTGGTGCA
Shewanella sp MR-7 Shewmr7_0591 -143 5.2 TGCACAAGTCTGGTGCA
Shewanella baltica OS155 Sbal_0797 -144 5.1 TGCTCGATCATGGTGCA
Shewanella denitrificans OS217 Sden_2905 -195 5.2 TGCGCCACTTAGGTGCA
-152 5.7 CGCACCTTATTGGTGCA
Shewanella frigidimarina NCIMB 400 Sfri_0623 -183 5.4 TGCACCAAAACGATGCA
Shewanella amazonensis SB2B Sama_0650 -172 5.6 TGCACCACCTTGGTGCG
-142 4.7 TGCACTTTTTTTGTGCG
Shewanella loihica PV-4 Shew_0846 -172 4.5 TGCGCTATTTTTGTGCG
-142 5.8 CGCACCTAATTGGTGCA
Shewanella pealeana ATCC 700345 Spea_0833 -135 5.5 TGCACCTTGCTGGTGCA
Shewanella halifaxensis HAW-EB4 Shal_0888 -137 4.7 CGCACTCGAATGGTGCA
Shewanella piezotolerans WP3 swp_3956 -136 5.4 TGCACCCGATTGGTGCA
Shewanella sediminis HAW-EB3 Ssed_0933 -151 5.1 CGCACTTGTTTGGTGCA
Shewanella woodyi ATCC 51908 Swoo_0979 -173 4.6 TGCGCTAATTCCGTGCA
-143 5.4 CGCACCTTAATGGTGCG
Position: -182
Score: 5.1
Sequence: CGCACCAAGCTGGAGCA
Position: -161
Score: 5
Sequence: CGCACCATAATAGAGCA
Locus tag: Ping_3484
Ping_3484 -182 5.1 CGCACCAAGCTGGAGCA
-161 5 CGCACCATAATAGAGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnA
Ortholog function: glutamine synthetase, type I
Shewanella oneidensis MR-1 SO_4410 -246 4.6 TGCACTAAAATGGGGGA
-179 5.4 TGCACCAACACAGTGCA
Shewanella putrefaciens CN-32 Sputcn32_0412 -184 5.4 CGCACCATCATAGTGCA
Shewanella sp W3-18-1 Sputw3181_0266 -184 5.6 CGCACCATTATAGTGCA
Shewanella sp ANA-3 Shewana3_0300 -247 4.6 TGCACTAAAATGGTGTT
-180 5.6 CGCACCAATATAGTGCA
Shewanella sp MR-4 Shewmr4_0305 -247 4.6 TGCACTAAAATGGTGTT
-180 5.8 AGCACCAATATGGTGCA
Shewanella sp MR-7 Shewmr7_3719 -183 5.6 AGCACCAACATGGTGCA
Shewanella baltica OS155 Sbal_0306 -183 5.5 AGCACCATAGTGGTGCA
Shewanella denitrificans OS217 Sden_3454 -251 5.7 TGCACCATAACGGTGCG
-228 5 TGCACCATTATGGTGAT
Shewanella frigidimarina NCIMB 400 Sfri_0325 -197 5.4 TGCACGAGGTTGGTGCA
Shewanella amazonensis SB2B Sama_3416 -244 4.9 TGCACCTTTATCATGCA
-214 5.1 CGCACCAACATTGTGCG
-192 5.5 TGCCCCGATTTGGTGCA
Shewanella loihica PV-4 Shew_3554 -217 5.4 CGCACCATATTGGTGAA
-178 5.9 TGCACCTTTATGGTGCA
Shewanella pealeana ATCC 700345 Spea_3916 -202 4.7 TGCACCATATAGATCCA
-180 5.8 CGCACCAAAATGGTGCG
Shewanella halifaxensis HAW-EB4 Shal_0353 -180 5.4 CGCACCAAAATAGTGCG
Shewanella piezotolerans WP3 swp_0268 -218 4.7 TGCACGATTATGAAGCA
-201 4.8 CGCACCAAAATGATCCA
-179 4.9 CGCACCATTAGAGTGCA
Shewanella sediminis HAW-EB3 Ssed_0292 -227 4.7 CGCACCAGCTTGGTGAG
-188 5.5 CGCACCAACTTAGTGCA
Shewanella woodyi ATCC 51908 Swoo_4643 -216 4.7 CGCACCAGGATGGTGAG
-199 5 CGCACCATTATCGGGCA
-177 5.4 CGCACCAAACTAGTGCA
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