Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of XylR regulog to Geobacillus sp. Y412MC61

Reference regulog properties
Source regulog: XylR - Bacillales
Regulator type: Transcription factor
Regulator family: ROK
Regulation mode: repressor
Biological process: Xylose utilization
Effector: Xylose
Phylum: Firmicutes
Propagated regulon:
Target genome Geobacillus sp. Y412MC61
Orthologous TF(s) GYMC61_0217
Regulated genes 4
Built upon 28 sites [see more]
Predicted regulatory interactions in Geobacillus sp. Y412MC61
Locus tag Position Score Sequence
Position: -230
Score: 6
Sequence: AATTAGTTTATTATATAAACTAAGA
Locus tag: GYMC61_0217
GYMC61_0217 -230 6 AATTAGTTTATTATATAAACTAAGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: xylR
Ortholog function: Transcriptional repressor of the xylose metabolism, ROK family
Bacillus subtilis subsp. subtilis str. 168 BSU17590 -268 6.6 AGTTTGTTGTTTAAACAAACTAACT
Bacillus amyloliquefaciens FZB42 RBAM_017340 -187 6.1 AGTTTGTTGCCCAAACAAACTAACT
Bacillus pumilus SAFR-032 BPUM_1830 -191 5.9 ACTTTGTAAGTTGATTCAACAAACT
Bacillus licheniformis DSM 13 BLi04049 -147 6.4 TGTTTGTTTAACCATTAAACTAACT
Geobacillus kaustophilus HTA426 GK2422 -230 6 AATTAGTTTATTATATAAACTAAGA
Bacillus halodurans C-125 BH2758 -151 6.7 ACTTAGTTTATTCAATAGACAAACT
Oceanobacillus iheyensis HTE831 OB3124 -87 5.8 TGTTTGTCTACCGGTTAAACAAAGT
Paenibacillus sp. JDR-2 Pjdr2_5182 -113 6.7 AGTTTGTCTATTAAACAAACTAAGT
Position: -89
Score: 6.3
Sequence: ACTTTGTTTATATGATAGACAAACA
Locus tag: GYMC61_2688
GYMC61_2688 -89 6.3 ACTTTGTTTATATGATAGACAAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: xylA
Ortholog function: Xylose isomerase (EC 5.3.1.5)
Bacillus subtilis subsp. subtilis str. 168 BSU17600 -100 6.6 AGTTAGTTTGTTTAAACAACAAACT
Bacillus amyloliquefaciens FZB42 RBAM_017350 -101 6.1 AGTTAGTTTGTTTGGGCAACAAACT
Bacillus pumilus SAFR-032 BPUM_1829 -47 5.9 AGTTTGTTGAATCAACTTACAAAGT
Bacillus licheniformis DSM 13 BLi04048 -69 6.4 AGTTAGTTTAATGGTTAAACAAACA
Geobacillus kaustophilus HTA426 GK1875 -87 6.3 ACTTTGTTTATATGATAGACAAACA
Bacillus halodurans C-125 BH2757 -102 6.7 AGTTTGTCTATTGAATAAACTAAGT
Bacillus clausii KSM-K16 ABC0572 -45 6.3 ACTTAGTTTAAATAATAAACAAACC
Oceanobacillus iheyensis HTE831 OB3119 -44 6.7 ACTTTGTTTGTTAGATAAACAAACA
Paenibacillus sp. JDR-2 Pjdr2_5159 -123 6.7 AGTTTGTTTAATAGACAAACTAAGT
Position: -137
Score: 5.8
Sequence: AGTTAGTATATTTGATTTACAAACA
Locus tag: GYMC61_2695
GYMC61_2695 -137 5.8 AGTTAGTATATTTGATTTACAAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: xynA
Ortholog function: Endo-1,4-beta-xylanase A precursor (EC 3.2.1.8)
Bacillus halodurans C-125 BH2120 -192 5.8 AGTTTGTTCACTGGATCAACTAAGT
Position: -94
Score: 6.1
Sequence: AGTTTGTTTGTGTTATATACAAACT
Locus tag: GYMC61_2713
GYMC61_2713 -94 6.1 AGTTTGTTTGTGTTATATACAAACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: galM
Ortholog function: Aldose 1-epimerase (EC 5.1.3.3)
Geobacillus kaustophilus HTA426 GK1877 -44 5.8 ACTTAGTTTATTAATCTAACTATCT
Bacillus clausii KSM-K16 ABC0574 -45 6.3 ACTTAGTTTAAATAATAAACAAACC
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