Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of CodY regulog to Bacillus licheniformis DSM 13

Reference regulog properties
Source regulog: CodY - Bacillales
Regulator type: Transcription factor
Regulator family: CodY
Regulation mode:
Biological process: Amino acid metabolism
Effector: Guanosine triphosphate; Branched-chain amino acids
Phylum: Firmicutes
Propagated regulon:
Target genome Bacillus licheniformis DSM 13
Orthologous TF(s) BLi01837
Regulated genes 78
Built upon 445 sites [see more]
Predicted regulatory interactions in Bacillus licheniformis DSM 13
Locus tag Position Score Sequence
Position: -36
Score: 5
Sequence: AATTTTTAGAAAATA
Locus tag: BLi00013
BLi00013 -36 5 AATTTTTAGAAAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yaaC
Ortholog function: Conserved hypothetical protein
Bacillus pumilus SAFR-032 BPUM_0503 -36 5 AATTTTTAGAAAATA
Bacillus licheniformis DSM 13 BLi00013 -36 5 AATTTTTAGAAAATA
Bacillus cereus ATCC 14579 BC0012 -30 4.7 AATTTTTAGACAATA
Position: -193
Score: 4.5
Sequence: ACTTTTCTCAAAATT
Locus tag: BLi00175
BLi00175 -193 4.5 ACTTTTCTCAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pdaB
Ortholog function: Probable polysaccharide deacetylase
Bacillus licheniformis DSM 13 BLi00175 -193 4.5 ACTTTTCTCAAAATT
Anoxybacillus flavithermus WK1 Aflv_0145 -92 4.4 ATTTTTTAAAAAAAT
Position: -53
Score: 4.8
Sequence: AATATACTGAAAATT
Locus tag: BLi00191
BLi00191 -53 4.8 AATATACTGAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: murQ
Ortholog function: N-acetylmuramic acid 6-phosphate etherase (EC 4.2.-.-)
Bacillus subtilis subsp. subtilis str. 168 BSU01700 -95 4.4 AAATTTCAAAAATTT
-48 4.6 AATATACTGAATATT
Bacillus pumilus SAFR-032 BPUM_0158 -131 4.5 TATTTTCTAACTATT
Bacillus licheniformis DSM 13 BLi00191 -53 4.8 AATATACTGAAAATT
Position: -241
Score: 4.4
Sequence: TATTATAAGAATATT
Locus tag: BLi00220
BLi00220 -241 4.4 TATTATAAGAATATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ybxG
Ortholog function: Amino acid permease
Bacillus subtilis subsp. subtilis str. 168 BSU02060 -257 4.8 AATATTCAAATAATT
Bacillus amyloliquefaciens FZB42 RBAM_002460 -268 4.4 TATTATCTTAATATT
Bacillus licheniformis DSM 13 BLi00220 -241 4.4 TATTATAAGAATATT
Position: -155
Score: 4.3
Sequence: AAGTTTCTGAAAAAA
Locus tag: BLi00373
BLi00373 -155 4.3 AAGTTTCTGAAAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: putB
Ortholog function: Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase)
Bacillus subtilis subsp. subtilis str. 168 BSU03200 -106 4.1 AATAATCAGAATCTT
-89 4.5 TATTTTGAGAATATT
Bacillus amyloliquefaciens FZB42 RBAM_003440 -23 4.8 TATTTTTAGAATATT
Bacillus licheniformis DSM 13 BLi00373 -155 4.3 AAGTTTCTGAAAAAA
Position: -85
Score: 4.5
Sequence: ATTAGTCTAAAAATT
Locus tag: BLi00375
BLi00375 -85 4.5 ATTAGTCTAAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: putP
Ortholog function: Proline/sodium symporter (TC 2.A.21.2.1)
Bacillus subtilis subsp. subtilis str. 168 BSU03220 -106 4.1 AATAATCAGAATCTT
-89 4.5 TATTTTGAGAATATT
Bacillus amyloliquefaciens FZB42 RBAM_003460 -23 4.8 TATTTTTAGAATATT
Bacillus licheniformis DSM 13 BLi00375 -85 4.5 ATTAGTCTAAAAATT
Geobacillus kaustophilus HTA426 GK3452 -158 4.8 AATTTACAGAATATT
Bacillus cereus ATCC 14579 BC1231 -106 4.6 ACATTTCTGAAAATT
-76 4.6 ATTTTTCAGAATAAT
Position: -49
Score: 4.8
Sequence: AATTTTCAGAACATT
Locus tag: BLi00421
BLi00421 -49 4.8 AATTTTCAGAACATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: rocR
Ortholog function: Transcriptional activator of arginine utilization, Fis family
Bacillus subtilis subsp. subtilis str. 168 BSU40350 -34 4.7 AATATTAAGAAAATA
Bacillus licheniformis DSM 13 BLi00421 -49 4.8 AATTTTCAGAACATT
Bacillus cereus ATCC 14579 BC0473 -60 4.8 AATTTTAATAAAATT
Position: -114
Score: 4.8
Sequence: AATGTTCTGAAAATT
Locus tag: BLi00422
BLi00422 -114 4.8 AATGTTCTGAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: rocD
Ortholog function: Ornithine aminotransferase (EC 2.6.1.13)
Bacillus subtilis subsp. subtilis str. 168 BSU40340 -221 4.7 TATTTTCTTAATATT
Bacillus licheniformis DSM 13 BLi00422 -114 4.8 AATGTTCTGAAAATT
Position: -57
Score: 4.7
Sequence: AAAATTCTGAATATT
Locus tag: BLi00656
BLi00656 -57 4.7 AAAATTCTGAATATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: amyS
Ortholog function: Cytoplasmic alpha-amylase (EC 3.2.1.1)
Bacillus licheniformis DSM 13 BLi00656 -57 4.7 AAAATTCTGAATATT
Bacillus cereus ATCC 14579 BC3482 -60 4.5 AATATTATAATAATT
Position: -289
Score: 5.1
Sequence: AATATTCAGAATATT
Locus tag: BLi00728
BLi00728 -289 5.1 AATATTCAGAATATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: opuE
Ortholog function: Sodium/proline symporter
Bacillus subtilis subsp. subtilis str. 168 BSU06660 -256 5 ATTTTTCTGAATATT
Bacillus amyloliquefaciens FZB42 RBAM_007060 -273 4.5 ATATGTCAGAAAATT
Bacillus pumilus SAFR-032 BPUM_0643 -231 4.9 ATTTATCAGAAAATT
Bacillus licheniformis DSM 13 BLi00728 -289 5.1 AATATTCAGAATATT
Bacillus cereus ATCC 14579 BC3644 -214 5.3 AATTTTCTGAATATT
Position: -167
Score: 5.1
Sequence: AATATTCTGAATATT
Locus tag: BLi00730
BLi00730 -167 5.1 AATATTCTGAATATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: gatC
Ortholog function: Aspartyl-tRNA(Asn) amidotransferase subunit C (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit C (EC 6.3.5.7)
Bacillus subtilis subsp. subtilis str. 168 BSU06670 -172 5 AATATTCAGAAAAAT
Bacillus amyloliquefaciens FZB42 RBAM_007070 -163 4.5 AATTTTCTGACATAT
Bacillus pumilus SAFR-032 BPUM_0644 -182 4.9 AATTTTCTGATAAAT
Bacillus licheniformis DSM 13 BLi00730 -167 5.1 AATATTCTGAATATT
Position: -83
Score: 4.6
Sequence: AATTTTCAGACAAAA
Locus tag: BLi00778
BLi00778 -83 4.6 AATTTTCAGACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yfmB
Ortholog function: Hypothetical protein
Bacillus pumilus SAFR-032 BPUM_0697 -80 4.7 AATTTTCTGAAATAT
Bacillus licheniformis DSM 13 BLi00778 -83 4.6 AATTTTCAGACAAAA
Position: -52
Score: 4.6
Sequence: AACTTTCAGAATATT
Locus tag: BLi00817
BLi00817 -52 4.6 AACTTTCAGAATATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glyP
Ortholog function: Sodium/glycine symporter GlyP
Bacillus licheniformis DSM 13 BLi00817 -52 4.6 AACTTTCAGAATATT
Bacillus halodurans C-125 BH4033 -51 4.5 TATTATTTGAATATT
Position: -65
Score: 4.6
Sequence: AATATTTAAAAAATA
Locus tag: BLi01009
BLi01009 -65 4.6 AATATTTAAAAAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: citR
Ortholog function: Transcriptional regulator of citrate synthase, LysR family
Bacillus subtilis subsp. subtilis str. 168 BSU09430 -68 4.6 AATATTTAAAAAATA
Bacillus amyloliquefaciens FZB42 RBAM_009690 -67 4.6 AATATTTAAAAAATA
Bacillus licheniformis DSM 13 BLi01009 -65 4.6 AATATTTAAAAAATA
Position: -60
Score: 4.6
Sequence: TATTTTTTAAATATT
Locus tag: BLi01010
BLi01010 -60 4.6 TATTTTTTAAATATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: citA
Ortholog function: Citrate synthase (si) (EC 2.3.3.1)
Bacillus subtilis subsp. subtilis str. 168 BSU09440 -55 4.6 TATTTTTTAAATATT
Bacillus amyloliquefaciens FZB42 RBAM_009700 -51 4.6 TATTTTTTAAATATT
Bacillus licheniformis DSM 13 BLi01010 -60 4.6 TATTTTTTAAATATT
Position: -112
Score: 4.5
Sequence: AATATTTAGATAAAT
Locus tag: BLi01027
BLi01027 -112 4.5 AATATTTAGATAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cueR
Ortholog function: Transcriptional regulator, MerR family
Bacillus subtilis subsp. subtilis str. 168 BSU09560 -139 4.4 AAAAATTTGAAAATT
Bacillus pumilus SAFR-032 BPUM_0905 -153 5 AATAATCTGAAAATT
Bacillus licheniformis DSM 13 BLi01027 -112 4.5 AATATTTAGATAAAT
Position: -217
Score: 4.5
Sequence: ATTTATCTAAATATT
Locus tag: BLi01028
BLi01028 -217 4.5 ATTTATCTAAATATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yhdT
Ortholog function: Hemolysins and related proteins containing CBS domains
Bacillus subtilis subsp. subtilis str. 168 BSU09590 -200 4.4 AAAAGTCTAAAAATT
Bacillus pumilus SAFR-032 BPUM_0906 -196 5 AATTTTCAGATTATT
Bacillus licheniformis DSM 13 BLi01028 -217 4.5 ATTTATCTAAATATT
Position: -93
Score: 4.7
Sequence: ATTTTTTAAAAAATT
Locus tag: BLi01078
BLi01078 -93 4.7 ATTTTTTAAAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hpr
Ortholog function: Transcriptional repressor of sporulation and extracellular protein, MarR family
Bacillus subtilis subsp. subtilis str. 168 BSU09990 -90 4.4 ATTTATTAAAAAATT
Bacillus licheniformis DSM 13 BLi01078 -93 4.7 ATTTTTTAAAAAATT
Anoxybacillus flavithermus WK1 Aflv_2290 -87 4.4 ATTTATTAAAAAATT
Bacillus halodurans C-125 BH1185 -148 4.7 ATTTTTTAAAAAATT
Position: -50
Score: 4.9
Sequence: AATTGTCATAAAATT
Locus tag: BLi01088
BLi01088 -50 4.9 AATTGTCATAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yhaA
Ortholog function: N-acyl-L-amino acid amidohydrolase (EC 3.5.1.14)
Bacillus subtilis subsp. subtilis str. 168 BSU10070 -57 4.4 AATATTCAGACTTTT
Bacillus amyloliquefaciens FZB42 RBAM_010310 -57 4.2 AATCTTCTGACATTT
Bacillus pumilus SAFR-032 BPUM_0954 -58 4.2 AAGATTCTAACAATT
Bacillus licheniformis DSM 13 BLi01088 -50 4.9 AATTGTCATAAAATT
Oceanobacillus iheyensis HTE831 OB1157 -58 4.3 AATTATATGAATAAT
Position: -124
Score: 4.6
Sequence: AATTTTCAATATATT
Locus tag: BLi01100
BLi01100 -124 4.6 AATTTTCAATATATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: gltT
Ortholog function: Proton/sodium-glutamate symport protein
Bacillus pumilus SAFR-032 BPUM_0965 -273 4.6 TTTTTTCTGAAAAAT
-140 4.4 TTTTTTCAAACAATT
Bacillus licheniformis DSM 13 BLi01100 -124 4.6 AATTTTCAATATATT
Position: -205
Score: 5.3
Sequence: AATTTTTAGAAAATT
Position: -92
Score: 4.2
Sequence: TATTTTCAAATTAAT
Locus tag: BLi01119
BLi01119 -205 5.3 AATTTTTAGAAAATT
-92 4.2 TATTTTCAAATTAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: comK
Ortholog function: Competence transcription factor
Bacillus subtilis subsp. subtilis str. 168 BSU10420 -225 4.5 AATTTTTAGACAACT
Bacillus amyloliquefaciens FZB42 RBAM_010600 -88 4.2 TATATTCAAAAAAAA
Bacillus pumilus SAFR-032 BPUM_0978 -222 5 AATTTTTAGACAATT
Bacillus licheniformis DSM 13 BLi01119 -205 5.3 AATTTTTAGAAAATT
Oceanobacillus iheyensis HTE831 OB1177 -94 4.5 TTTATTCTAAAAATT
Position: -103
Score: 5
Sequence: ATTTTTTTGAAAATT
Locus tag: BLi01176
BLi01176 -103 5 ATTTTTTTGAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnB
Ortholog function: Nitrogen regulatory protein P-II
Bacillus licheniformis DSM 13 BLi01176 -103 5 ATTTTTTTGAAAATT
Oceanobacillus iheyensis HTE831 OB1212 -113 4.6 AATTTTCTAAAAACA
Position: -122
Score: 4.6
Sequence: AATATTCAGAAAAGA
Locus tag: BLi01232
BLi01232 -122 4.6 AATATTCAGAAAAGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: oppA
Ortholog function: Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1)
Bacillus subtilis subsp. subtilis str. 168 BSU11430 -116 4.3 AATAATCAGAAAAGA
Bacillus amyloliquefaciens FZB42 RBAM_011430 -115 4.3 AATAATCAGAAAAGA
Position: -30
Score: 4.3
Sequence: AATAGACTGAATATT
Locus tag: BLi01233
BLi01233 -30 4.3 AATAGACTGAATATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: oppB
Ortholog function: Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1)
Bacillus subtilis subsp. subtilis str. 168 BSU11440 -116 4.3 AATAATCAGAAAAGA
Bacillus amyloliquefaciens FZB42 RBAM_011440 -115 4.3 AATAATCAGAAAAGA
Bacillus licheniformis DSM 13 BLi01233 -30 4.3 AATAGACTGAATATT
Position: -164
Score: 4
Sequence: AACAATCAGAATATT
Locus tag: BLi01289
BLi01289 -164 4 AACAATCAGAATATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: metI
Ortholog function: Cystathionine gamma-synthase (EC 2.5.1.48)
Bacillus subtilis subsp. subtilis str. 168 BSU11870 -297 4.6 AATTATTAGAAATTT
-214 4.3 AACAATCAGAAAATT
Bacillus amyloliquefaciens FZB42 RBAM_011930 -314 4.6 AATTATTAGAAATTT
Bacillus pumilus SAFR-032 BPUM_1119 -297 4.4 AAAATACAGAAAATT
-287 4.1 AAATTTCAATTAATT
Bacillus licheniformis DSM 13 BLi01289 -164 4 AACAATCAGAATATT
Anoxybacillus flavithermus WK1 Aflv_2067 -228 4.4 ATTTTTCGGAAAATA
-200 4.6 AAAAATCAGAAAATT
Geobacillus kaustophilus HTA426 GK0866 -341 4.5 AAATTTAAAAAAATT
Bacillus cereus ATCC 14579 BC4253 -344 4.4 AATTTTTTAATAAAT
Paenibacillus sp. JDR-2 Pjdr2_4798 -6 4.4 AACTTTATGAAAATT
Position: -47
Score: 4.9
Sequence: AATTATCAGATAATT
Locus tag: BLi01291
BLi01291 -47 4.9 AATTATCAGATAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yjcL
Ortholog function: Putative integral membrane protein
Bacillus subtilis subsp. subtilis str. 168 BSU11900 -29 4.7 AATTTTCTAACAATA
Bacillus licheniformis DSM 13 BLi01291 -47 4.9 AATTATCAGATAATT
Position: -61
Score: 4.5
Sequence: ATTTGTTAGAATATT
Locus tag: BLi01392
BLi01392 -61 4.5 ATTTGTTAGAATATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: dppA
Ortholog function: D-aminopeptidase (EC 3.4.11.-)
Bacillus subtilis subsp. subtilis str. 168 BSU12920 -43 4.5 ATTTGTTAGAATATT
Bacillus amyloliquefaciens FZB42 RBAM_012770 -58 4.5 ATTTGTTAGAATATT
Bacillus pumilus SAFR-032 BPUM_1184 -55 5 ATTTTTTAGAAAATT
Bacillus licheniformis DSM 13 BLi01392 -61 4.5 ATTTGTTAGAATATT
Oceanobacillus iheyensis HTE831 OB2971 -96 4.5 AATATTCAGATTAAT
-41 4.5 AATTAATAGAAAATT
Position: -114
Score: 4.7
Sequence: ACTTTTCATAAAATT
Locus tag: BLi01423
BLi01423 -114 4.7 ACTTTTCATAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ispA
Ortholog function: S8 family serine protease precursor (EC 3.4.21.-)
Bacillus subtilis subsp. subtilis str. 168 BSU13190 -147 4.5 AATATTTTGAAGATT
Bacillus licheniformis DSM 13 BLi01423 -114 4.7 ACTTTTCATAAAATT
Position: -39
Score: 4.7
Sequence: ATTTATCAGAATATT
Locus tag: BLi01752
BLi01752 -39 4.7 ATTTATCAGAATATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ylmA
Ortholog function: Putative ABC transporter, ATP-binding protein
Bacillus subtilis subsp. subtilis str. 168 BSU15340 -52 4.7 AGTTTTATGAAAATT
Bacillus amyloliquefaciens FZB42 RBAM_015170 -42 4.8 AGTTTTTAGAAAATT
Bacillus licheniformis DSM 13 BLi01752 -39 4.7 ATTTATCAGAATATT
Position: -171
Score: 4.7
Sequence: AATTTTCTCACAATT
Locus tag: BLi02046
BLi02046 -171 4.7 AATTTTCTCACAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: sspO
Ortholog function: Small, acid-soluble spore protein O
Bacillus subtilis subsp. subtilis str. 168 BSU17990 -170 4.7 AATTTTCTCACAATT
Bacillus amyloliquefaciens FZB42 RBAM_017790 -169 4.7 AATTTTCTCACAATT
Bacillus pumilus SAFR-032 BPUM_1698 -183 4.6 AATTCTCAGAAAAAT
-152 4.7 AATTTTCTCACAATT
Bacillus licheniformis DSM 13 BLi02046 -171 4.7 AATTTTCTCACAATT
Oceanobacillus iheyensis HTE831 OB0266 -227 4.5 AATATTCTGTTAATT
Position: -78
Score: 4.7
Sequence: AATTGTGAGAAAATT
Locus tag: BLi02047
BLi02047 -78 4.7 AATTGTGAGAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: citB
Ortholog function: Aconitate hydratase (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99)
Bacillus subtilis subsp. subtilis str. 168 BSU18000 -72 4.7 AATTGTGAGAAAATT
Bacillus amyloliquefaciens FZB42 RBAM_017800 -77 4.7 AATTGTGAGAAAATT
Bacillus pumilus SAFR-032 BPUM_1699 -83 4.7 AATTGTGAGAAAATT
-52 4.6 ATTTTTCTGAGAATT
Bacillus licheniformis DSM 13 BLi02047 -78 4.7 AATTGTGAGAAAATT
Position: -163
Score: 4.8
Sequence: AATATTCTGAATAAT
Locus tag: BLi02256
BLi02256 -163 4.8 AATATTCTGAATAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yocR
Ortholog function: Putative sodium-dependent transporter
Bacillus subtilis subsp. subtilis str. 168 BSU19340 -141 5 AATTTTCTGAATAAT
Bacillus amyloliquefaciens FZB42 RBAM_019090 -49 4.4 TATATTCTTACAATT
Bacillus licheniformis DSM 13 BLi02256 -163 4.8 AATATTCTGAATAAT
Position: -66
Score: 4.8
Sequence: ATTATTCAGAATATT
Locus tag: BLi02258
BLi02258 -66 4.8 ATTATTCAGAATATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yocS
Ortholog function: Sodium-dependent transporter
Bacillus subtilis subsp. subtilis str. 168 BSU19350 -92 5 ATTATTCAGAAAATT
Bacillus amyloliquefaciens FZB42 RBAM_019100 -169 4.4 AATTGTAAGAATATA
Bacillus licheniformis DSM 13 BLi02258 -66 4.8 ATTATTCAGAATATT
Position: -81
Score: 4.4
Sequence: TTTTTTCTAATAATT
Locus tag: BLi02277
BLi02277 -81 4.4 TTTTTTCTAATAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yoyD
Ortholog function: Hypothetical protein
Bacillus subtilis subsp. subtilis str. 168 BSU19579 -80 4.4 TTTTTTCTAATAATT
Bacillus pumilus SAFR-032 BPUM_1877 -27 4.4 AAATTACAAAAAATT
Bacillus licheniformis DSM 13 BLi02277 -81 4.4 TTTTTTCTAATAATT
Position: -97
Score: 4.6
Sequence: AATATTCTGTAAATA
Locus tag: BLi02315
BLi02315 -97 4.6 AATATTCTGTAAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ilvA
Ortholog function: Threonine dehydratase biosynthetic (EC 4.3.1.19)
Bacillus subtilis subsp. subtilis str. 168 BSU21770 -68 4.8 TATTTTTTGAATATT
Bacillus amyloliquefaciens FZB42 RBAM_019920 -75 4.4 AATTGTCTTATTATT
-67 4.5 TATTATTTGAATATT
Bacillus pumilus SAFR-032 BPUM_1911 -64 4.8 TATTTTTTGAATATT
Bacillus licheniformis DSM 13 BLi02315 -97 4.6 AATATTCTGTAAATA
Anoxybacillus flavithermus WK1 Aflv_1453 -99 5 ATTTTTTAGAAAATT
Position: -51
Score: 4.8
Sequence: AATATTCAGAATATA
Locus tag: BLi02324
BLi02324 -51 4.8 AATATTCAGAATATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ilvD
Ortholog function: Dihydroxy-acid dehydratase (EC 4.2.1.9)
Bacillus subtilis subsp. subtilis str. 168 BSU21870 -64 4.5 AATAAACTGAAAATT
Bacillus amyloliquefaciens FZB42 RBAM_020010 -56 4.5 AATAAACTGAAAATT
Bacillus pumilus SAFR-032 BPUM_1922 -83 4.5 AATAAACAGAAAATT
Bacillus licheniformis DSM 13 BLi02324 -51 4.8 AATATTCAGAATATA
Bacillus halodurans C-125 BH3062 -217 4.3 AATAGTCAAATTATT
-111 4.5 TATTTTTTGACTATT
Position: -74
Score: 4.7
Sequence: AATTGTTTGAAAAAT
Locus tag: BLi02408
BLi02408 -74 4.7 AATTGTTTGAAAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ndk
Ortholog function: Nucleoside diphosphate kinase (EC 2.7.4.6)
Bacillus licheniformis DSM 13 BLi02408 -74 4.7 AATTGTTTGAAAAAT
Oceanobacillus iheyensis HTE831 OB1787 -66 4.8 ATTTTTAAGAAAATT
Position: -43
Score: 4.5
Sequence: AATTATCAGATATTT
Locus tag: BLi02446
BLi02446 -43 4.5 AATTATCAGATATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: serA
Ortholog function: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
Bacillus subtilis subsp. subtilis str. 168 BSU23070 -44 4.5 AATTATCAGATATTT
Bacillus amyloliquefaciens FZB42 RBAM_021220 -44 4.5 AATTATCAGATATTT
Bacillus pumilus SAFR-032 BPUM_2039 -45 4.5 AATTATCAGATATTT
Bacillus licheniformis DSM 13 BLi02446 -43 4.5 AATTATCAGATATTT
Anoxybacillus flavithermus WK1 Aflv_1055 -47 4.8 AATTATCAGAAATTT
Geobacillus kaustophilus HTA426 GK2247 -86 4.8 AATTATCAGAAATTT
Position: -192
Score: 4.7
Sequence: AATTGTCTAATAATT
Locus tag: BLi02962
BLi02962 -192 4.7 AATTGTCTAATAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: dat
Ortholog function: Branched-chain amino acid aminotransferase (EC 2.6.1.42)
Bacillus pumilus SAFR-032 BPUM_2473 -166 4.7 AATTGTCTAATAATT
-54 4.6 AAGTGTCTGAAAATT
Bacillus licheniformis DSM 13 BLi02962 -192 4.7 AATTGTCTAATAATT
Anoxybacillus flavithermus WK1 Aflv_0590 -136 4.8 AATAATCAAAAAATT
-79 4.7 AATTTTCAAATAAAT
Bacillus cereus ATCC 14579 BC1396 -167 4.4 AATTTTTTGACTTTT
-88 5.3 AATTTTCTAAAAATT
Position: -184
Score: 4.5
Sequence: AATTTTCAAAAATAT
Position: -165
Score: 4.9
Sequence: AAATTTTAGAAAATT
Locus tag: BLi02994
BLi02994 -184 4.5 AATTTTCAAAAATAT
-165 4.9 AAATTTTAGAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: sdhC
Ortholog function: Succinate dehydrogenase, cytochrome b subunit
Bacillus amyloliquefaciens FZB42 RBAM_025520 -98 4.5 AATTGTCAATAAATT
Bacillus pumilus SAFR-032 BPUM_2503 -161 4.5 AAATTTCGGAAAATT
-94 4.5 AATTGTCAATAAATT
Bacillus licheniformis DSM 13 BLi02994 -184 4.5 AATTTTCAAAAATAT
-165 4.9 AAATTTTAGAAAATT
Position: -151
Score: 4.9
Sequence: AATTTTCTAAAATTT
Position: -132
Score: 4.5
Sequence: ATATTTTTGAAAATT
Locus tag: BLi02995
BLi02995 -151 4.9 AATTTTCTAAAATTT
-132 4.5 ATATTTTTGAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yslB
Ortholog function: Predicted hydrocarbon binding protein (V4R domain)
Bacillus amyloliquefaciens FZB42 RBAM_025530 -213 4.5 AATTTATTGACAATT
Bacillus pumilus SAFR-032 BPUM_2504 -201 4.5 AATTTATTGACAATT
-134 4.5 AATTTTCCGAAATTT
Bacillus licheniformis DSM 13 BLi02995 -151 4.9 AATTTTCTAAAATTT
-132 4.5 ATATTTTTGAAAATT
Position: -64
Score: 4.3
Sequence: TACTTTCTGAATATT
Locus tag: BLi03003
BLi03003 -64 4.3 TACTTTCTGAATATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: lcfA
Ortholog function: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Anoxybacillus flavithermus WK1 Aflv_0564 -56 4.8 AAATTTCAGAAAATA
Bacillus cereus ATCC 14579 BC4526 -277 4.4 AAAAGTCAGAATATT
Oceanobacillus iheyensis HTE831 OB2122 -67 4.4 AAAATTCAAAAAATA
Position: -344
Score: 4.1
Sequence: TATTTTTTTAAAAAA
Position: -343
Score: 4.1
Sequence: ATTTTTTTAAAAAAA
Position: -225
Score: 4.5
Sequence: AAATGTCTGATAATT
Position: -27
Score: 4.1
Sequence: AATTTTTAAAAAAAG
Locus tag: BLi03062
BLi03062 -344 4.1 TATTTTTTTAAAAAA
-343 4.1 ATTTTTTTAAAAAAA
-225 4.5 AAATGTCTGATAATT
-27 4.1 AATTTTTAAAAAAAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: citZ
Ortholog function: Citrate synthase (si) (EC 2.3.3.1)
Bacillus subtilis subsp. subtilis str. 168 BSU29140 -224 4.3 AAATGTCTGATTATT
Bacillus amyloliquefaciens FZB42 RBAM_026180 -224 4.2 ATTAATCAGATTATT
Bacillus pumilus SAFR-032 BPUM_2556 -210 4.3 AAATGTCTGATTATT
Bacillus licheniformis DSM 13 BLi03062 -225 4.5 AAATGTCTGATAATT
Anoxybacillus flavithermus WK1 Aflv_0504 -209 4.3 AAAAGTCTGATAATT
Geobacillus kaustophilus HTA426 GK2736 -201 4.3 AAAAGTCTGATAATT
Oceanobacillus iheyensis HTE831 OB2168 -222 4.3 AAATATTAAAAAATT
Position: -194
Score: 4.8
Sequence: TATATTCAGAAAATA
Position: -98
Score: 4.1
Sequence: TATTTTTTGAATTTA
Locus tag: BLi03086
BLi03086 -194 4.8 TATATTCAGAAAATA
-98 4.1 TATTTTTTGAATTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ackA
Ortholog function: Acetate kinase (EC 2.7.2.1)
Bacillus subtilis subsp. subtilis str. 168 BSU29470 -182 4 atgTgTCtGAaAata
Bacillus amyloliquefaciens FZB42 RBAM_026400 -172 4.6 ATTTATCAGAAAATA
Bacillus pumilus SAFR-032 BPUM_2579 -206 4.7 ATTATTCAGAAAATA
Bacillus licheniformis DSM 13 BLi03086 -194 4.8 TATATTCAGAAAATA
Position: -165
Score: 4.8
Sequence: AATTTTCTGTCAATT
Locus tag: BLi03101
BLi03101 -165 4.8 AATTTTCTGTCAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: iscS
Ortholog function: Cysteine desulfurase (EC 2.8.1.7)
Bacillus subtilis subsp. subtilis str. 168 BSU29590 -165 4.6 AATATTCTGTCAATT
-150 4.7 AATTGTCAGATAATA
Bacillus amyloliquefaciens FZB42 RBAM_026520 -167 4.6 AATATTCTGTCAATT
-152 4.7 AATTGTCAGATAATA
Bacillus licheniformis DSM 13 BLi03101 -165 4.8 AATTTTCTGTCAATT
Position: -74
Score: 4.8
Sequence: TATTTTTTAAAAATT
Locus tag: BLi03119
BLi03119 -74 4.8 TATTTTTTAAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: acsA
Ortholog function: Acetyl-coenzyme A synthetase (EC 6.2.1.1)
Bacillus subtilis subsp. subtilis str. 168 BSU29680 -78 4.6 TATATTTTAAAAATT
Bacillus amyloliquefaciens FZB42 RBAM_026800 -73 4.6 TATATTTTAAAAATT
Bacillus pumilus SAFR-032 BPUM_2616 -77 4.6 AGTTTTTTAAAAATT
Bacillus licheniformis DSM 13 BLi03119 -74 4.8 TATTTTTTAAAAATT
Anoxybacillus flavithermus WK1 Aflv_0462 -77 5.1 AATTTTTTAAAAATT
Geobacillus kaustophilus HTA426 GK2806 -102 4.4 AAATTTCAAAAAAGT
-77 4.9 AATATTTTAAAAATT
Bacillus cereus ATCC 14579 BC4659 -69 4.8 AATATACTGAAAATT
Position: -96
Score: 4.8
Sequence: AATTTTTAAAAAATA
Locus tag: BLi03120
BLi03120 -96 4.8 AATTTTTAAAAAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: acuA
Ortholog function: Acetyltransferase AcuA, acetyl-CoA synthetase inhibitor
Bacillus subtilis subsp. subtilis str. 168 BSU29690 -97 4.6 AATTTTTAAAATATA
Bacillus amyloliquefaciens FZB42 RBAM_026810 -100 4.6 AATTTTTAAAATATA
Bacillus pumilus SAFR-032 BPUM_2617 -93 4.6 AATTTTTAAAAAACT
Bacillus licheniformis DSM 13 BLi03120 -96 4.8 AATTTTTAAAAAATA
Anoxybacillus flavithermus WK1 Aflv_0461 -101 5.1 AATTTTTAAAAAATT
Geobacillus kaustophilus HTA426 GK2807 -112 4.9 AATTTTTAAAATATT
-87 4.4 ACTTTTTTGAAATTT
Bacillus cereus ATCC 14579 BC4660 -110 4.8 AATTTTCAGTATATT
Oceanobacillus iheyensis HTE831 OB2221 -85 4.6 AAATTTCAAAAAATA
Position: -98
Score: 4.5
Sequence: TATTATTTGAAAATA
Locus tag: BLi03198
BLi03198 -98 4.5 TATTATTTGAAAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gltZ
Ortholog function: Proton/glutamate symport protein @ Sodium/glutamate symport protein
Bacillus licheniformis DSM 13 BLi03198 -98 4.5 TATTATTTGAAAATA
Oceanobacillus iheyensis HTE831 OB2303 -49 4.5 AATTGTTAGAATAAT
Position: -88
Score: 4.7
Sequence: AATTGTCAAACAATT
Locus tag: BLi03206
BLi03206 -88 4.7 AATTGTCAAACAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ytkC
Ortholog function: Hypothetical membrane protein
Bacillus subtilis subsp. subtilis str. 168 BSU30640 -82 4.9 ATTTTTCTGAAAAAT
Bacillus amyloliquefaciens FZB42 RBAM_027650 -70 4.9 ATTTTTCTGAAAAAT
Bacillus licheniformis DSM 13 BLi03206 -88 4.7 AATTGTCAAACAATT
Position: -44
Score: 4.8
Sequence: AATATTCAGAAGATT
Locus tag: BLi03321
BLi03321 -44 4.8 AATATTCAGAAGATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: alaR
Ortholog function: Transcriptional regulator of alanine metabolism, Lrp/AsnC family
Bacillus licheniformis DSM 13 BLi03321 -44 4.8 AATATTCAGAAGATT
Anoxybacillus flavithermus WK1 Aflv_2391 -32 4.7 AATTGTGTGAAAATT
Position: -165
Score: 4.6
Sequence: CATTTTCAGAAAATA
Locus tag: BLi03329
BLi03329 -165 4.6 CATTTTCAGAAAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: kapD
Ortholog function: KapD, inhibitor of KinA pathway to sporulation
Bacillus licheniformis DSM 13 BLi03329 -165 4.6 CATTTTCAGAAAATA
Bacillus cereus ATCC 14579 BC4910 -142 4.5 ATTTTTTAAAATATT
Position: -68
Score: 4.6
Sequence: TATTTTCTGAAAATG
Locus tag: BLi03330
BLi03330 -68 4.6 TATTTTCTGAAAATG
Supported by regulated orthologs from reference regulons
Ortholog gene name: yuxJ
Ortholog function: MFS family major facilitator transporter
Bacillus subtilis subsp. subtilis str. 168 BSU31480 -135 4.4 CATTTTCTAAAAATA
Bacillus amyloliquefaciens FZB42 RBAM_028580 -178 4.4 CATTTTCTAAAAATA
Bacillus licheniformis DSM 13 BLi03330 -68 4.6 TATTTTCTGAAAATG
Position: -35
Score: 4.9
Sequence: TATTATCAGAAAATT
Locus tag: BLi03391
BLi03391 -35 4.9 TATTATCAGAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yuiA
Ortholog function: Conserved hypothetical protein
Bacillus licheniformis DSM 13 BLi03391 -35 4.9 TATTATCAGAAAATT
Position: -56
Score: 5
Sequence: AATTATTAGAAAATT
Locus tag: BLi03425
BLi03425 -56 5 AATTATTAGAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: BH3439
Ortholog function: Sodium/proline symporter
Bacillus licheniformis DSM 13 BLi03425 -56 5 AATTATTAGAAAATT
Anoxybacillus flavithermus WK1 Aflv_2428 -166 4.5 ATTTTTTAAAATATT
Bacillus cereus ATCC 14579 BC4071 -70 4.5 AATTTATTGATAATT
Bacillus halodurans C-125 BH3439 -240 4.5 AATTTTCGAAAAATA
-62 5 AATTTTCTGAATATA
Bacillus clausii KSM-K16 ABC1961 -101 4.6 TTTTTTCAGAAAATA
Position: -132
Score: 4.4
Sequence: AAAATTCAGAAATTT
Locus tag: BLi03466
BLi03466 -132 4.4 AAAATTCAGAAATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadN
Ortholog function: Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)
Bacillus amyloliquefaciens FZB42 RBAM_029920 -132 4.5 AAATTTAAAAAAATT
Bacillus licheniformis DSM 13 BLi03466 -132 4.4 AAAATTCAGAAATTT
Bacillus cereus ATCC 14579 BC5004 -141 4.5 TTATTTCAGAAAATT
Bacillus halodurans C-125 BH3488 -134 4.8 AATTTTCAGAAAATC
Position: -111
Score: 4.6
Sequence: AATTTTTATAAAAAT
Position: -110
Score: 4.4
Sequence: ATTTTTATAAAAATA
Locus tag: BLi03479
BLi03479 -111 4.6 AATTTTTATAAAAAT
-110 4.4 ATTTTTATAAAAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yusZ
Ortholog function: Oxidoreductase, short-chain dehydrogenase/reductase (EC 1.1.1.-)
Bacillus subtilis subsp. subtilis str. 168 BSU32980 -83 4.4 TATTGTATAAAAATT
Bacillus licheniformis DSM 13 BLi03479 -111 4.6 AATTTTTATAAAAAT
Position: -43
Score: 4.8
Sequence: TATTTTCTGAAAAGT
Locus tag: BLi03892
BLi03892 -43 4.8 TATTTTCTGAAAAGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: spoIIQ
Ortholog function: Stage II sporulation protein related to metaloproteases (SpoIIQ)
Bacillus subtilis subsp. subtilis str. 168 BSU36550 -44 4.8 TATTTTCAGAAAAGT
Bacillus amyloliquefaciens FZB42 RBAM_033730 -44 4.8 TATTTTCAGAAAAGT
Bacillus licheniformis DSM 13 BLi03892 -43 4.8 TATTTTCTGAAAAGT
Position: -151
Score: 4.7
Sequence: ATTATTCAGACAATT
Locus tag: BLi04129
BLi04129 -151 4.7 ATTATTCAGACAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pelB
Ortholog function: Pectate lyase precursor (EC 4.2.2.2)
Bacillus licheniformis DSM 13 BLi04129 -151 4.7 ATTATTCAGACAATT
Bacillus halodurans C-125 BH3819 -183 4.5 TATATTCATAATATT
-174 4.8 AATATTTATAAAATT
Position: -91
Score: 4.7
Sequence: AAATTTATGAAAATT
Position: 8
Score: 4.5
Sequence: TTTATTCAAAAAATT
Locus tag: BLi04156
BLi04156 -91 4.7 AAATTTATGAAAATT
8 4.5 TTTATTCAAAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpQ
Ortholog function: Glycerophosphoryl diester phosphodiesterase, periplasmic (EC 3.1.4.46)
Bacillus licheniformis DSM 13 BLi04156 -91 4.7 AAATTTATGAAAATT
Oceanobacillus iheyensis HTE831 OB2833 -40 4.5 AATATAATGAAAATT
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