Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of CymR regulog to Bacillus licheniformis DSM 13

Reference regulog properties
Source regulog: CymR - Bacillales
Regulator type: Transcription factor
Regulator family: Rrf2
Regulation mode: repressor
Biological process: Cysteine metabolism
Effector: O-acetyl-L-serine; CysK, cysteine synthetase
Phylum: Firmicutes
Propagated regulon:
Target genome Bacillus licheniformis DSM 13
Orthologous TF(s) BLi02877
Regulated genes 6
Built upon 65 sites [see more]
Predicted regulatory interactions in Bacillus licheniformis DSM 13
Locus tag Position Score Sequence
Position: -38
Score: 5.6
Sequence: TAATCCCAATAAAATTACTCGGAAATT
Locus tag: BLi00089
BLi00089 -38 5.6 TAATCCCAATAAAATTACTCGGAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cysK
Ortholog function: Cysteine synthase (EC 2.5.1.47)
Bacillus subtilis subsp. subtilis str. 168 BSU00730 -39 5.4 TAATACCAATACAAATAGTCGGAAATT
Bacillus amyloliquefaciens FZB42 RBAM_000840 -39 5.8 TAATACCAATAAATTTAGTCGGAAATT
Bacillus pumilus SAFR-032 BPUM_0057 -40 4.6 TtAaTaCaATaAAATTAcTcGGAgaTA
Bacillus licheniformis DSM 13 BLi00089 -38 5.6 TAATCCCAATAAAATTACTCGGAAATT
Anoxybacillus flavithermus WK1 Aflv_0065 -30 5 CAAATTCTATAAAAATACTCGGGATTA
Geobacillus kaustophilus HTA426 GK0065 -38 4.7 CAAAGTCGATAAAATTAATGGGGATTA
Bacillus cereus ATCC 14579 BC0075 -39 5.3 TAAAACCAATAAAAATACTCGGTGTTA
Bacillus halodurans C-125 BH0088 -39 5.2 GAAAACCAATAAATTTACTTGGGATTA
Bacillus clausii KSM-K16 ABC0109 -42 4.9 TAAAACCAATGAAGATACTAGGGATTG
Oceanobacillus iheyensis HTE831 OB0084 -41 6 TAAATCTTATAAAAATACTTGGAATTA
Paenibacillus sp. JDR-2 Pjdr2_0074 -44 5.7 AAAAACCAACTAAATTAGTCGGAATAA
Position: -45
Score: 5.9
Sequence: TAATACTTATTAAATCTATCGGAATTT
Locus tag: BLi00540
BLi00540 -45 5.9 TAATACTTATTAAATCTATCGGAATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ydbM
Ortholog function: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Bacillus subtilis subsp. subtilis str. 168 BSU04520 -45 6.4 TAATACATATTAAATTTATCGGAATTA
Bacillus amyloliquefaciens FZB42 RBAM_004850 -82 6 TAATACTTATTAACTTTATCGGAATTA
Bacillus pumilus SAFR-032 BPUM_2341 -89 5.5 TAAATCCTATAAGTAAAGTGTGTTTTA
-61 4.9 TTATTCCGATTGGAAAAATCAGATATG
Bacillus licheniformis DSM 13 BLi00540 -45 5.9 TAATACTTATTAAATCTATCGGAATTT
Oceanobacillus iheyensis HTE831 OB0293 -45 5.5 TTATACCTATTGACTTACTAGGCATTA
Position: -77
Score: 5.1
Sequence: TAATTCCTACTTGACCAATCAGGTTTG
Locus tag: BLi00975
BLi00975 -77 5.1 TAATTCCTACTTGACCAATCAGGTTTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: yhcL
Ortholog function: Sodium-cystine symporter
Bacillus subtilis subsp. subtilis str. 168 BSU09130 -73 5.2 TAATTCGCACTTGACCCATCGGAATTA
Bacillus licheniformis DSM 13 BLi00975 -77 5.1 TAATTCCTACTTGACCAATCAGGTTTG
Bacillus cereus ATCC 14579 BC4242 -72 5.5 AATTTCATAGTTGACTTATAGGTTTTA
-39 4.8 TATATTCTATATAACAGATTGGAATTA
Bacillus clausii KSM-K16 ABC2897 -78 5.2 TAATTCCCACTTGACTCATATGATTAT
Oceanobacillus iheyensis HTE831 OB2714 -56 6.2 TAATTCGTAGTAAATTAATTGGAATTA
Paenibacillus sp. JDR-2 Pjdr2_6037 -148 5.1 AATTCCCCATAGAAATAGTCGGATTTA
-41 5 TAATTCCAATCAAACAACTTGGATTAG
Position: -242
Score: 5.5
Sequence: CTATTCCTATAAATCAAATCGGTTTTA
Locus tag: BLi01300
BLi01300 -242 5.5 CTATTCCTATAAATCAAATCGGTTTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cysL
Ortholog function: Regulator of sulfur assimilation, activates cysJI expression
Bacillus licheniformis DSM 13 BLi01300 -242 5.5 CTATTCCTATAAATCAAATCGGTTTTA
Anoxybacillus flavithermus WK1 Aflv_1598 -112 5.4 CTATTCCTATAAATCAAGTATGTTTTA
Position: -105
Score: 5.5
Sequence: TAAAACCGATTTGATTTATAGGAATAG
Locus tag: BLi01302
BLi01302 -105 5.5 TAAAACCGATTTGATTTATAGGAATAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: cysJ
Ortholog function: Sulfite reductase [NADPH] flavoprotein alpha-component (EC 1.8.1.2)
Bacillus licheniformis DSM 13 BLi01302 -105 5.5 TAAAACCGATTTGATTTATAGGAATAG
Anoxybacillus flavithermus WK1 Aflv_1597 -48 5.4 TAAAACATACTTGATTTATAGGAATAG
Bacillus halodurans C-125 BH0609 -87 5.7 TAAAACCAATTTGACTTATCGGAATAA
Bacillus clausii KSM-K16 ABC0618 -265 4.9 AAATACCGAGTTTGTTAATCAGGATAA
Oceanobacillus iheyensis HTE831 OB1653 -98 5.4 CAATTCACATTGTATTACTATGAATTA
Position: -54
Score: 5.8
Sequence: TAAATCATACTATACTTATAGGAATTG
Locus tag: BLi02856
BLi02856 -54 5.8 TAAATCATACTATACTTATAGGAATTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: yrrT
Ortholog function: SAM-dependent methyltransferase
Bacillus subtilis subsp. subtilis str. 168 BSU27280 -49 6.1 TAATCCATAGTATACTTATAGGAATTA
Bacillus amyloliquefaciens FZB42 RBAM_024380 -49 5.9 TAATCCATACTATACTCATAGGAATTA
Bacillus pumilus SAFR-032 BPUM_2363 -51 5.4 TAAAACATACTATACGCATAGGAATAA
Bacillus licheniformis DSM 13 BLi02856 -54 5.8 TAAATCATACTATACTTATAGGAATTG
Anoxybacillus flavithermus WK1 Aflv_0758 -36 6.4 TAATTCATACTATACTTATAGGAATTA
Geobacillus kaustophilus HTA426 GK2543 -51 5.9 AAAAACATACTATATTTATAGGAATTA
Bacillus cereus ATCC 14579 BC4369 -29 5.1 TAAAACCGATAAGAAAAAGGGGAATTT
Paenibacillus sp. JDR-2 Pjdr2_5106 -105 5.2 TAAATCCGATTAATAAGGTTGGAAAAA
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