Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of RmgR regulog to Bacillus subtilis subsp. subtilis str. JH642

Reference regulog properties
Source regulog: RmgR - Bacillales
Regulator type: Transcription factor
Regulator family: AraC
Regulation mode: activator
Biological process: Rhamnogalacturonides utilization
Effector:
Phylum: Firmicutes
Propagated regulon:
Target genome Bacillus subtilis subsp. subtilis str. JH642
Orthologous TF(s) BsubsJ_010100016253
Regulated genes 3
Built upon 10 sites [see more]
Predicted regulatory interactions in Bacillus subtilis subsp. subtilis str. JH642
Locus tag Position Score Sequence
Position: -282
Score: 5.8
Sequence: CCATTA-(12)-TCGTTT
Locus tag: BsubsJ_010100016238
BsubsJ_010100016238 -282 5.8 CCATTA-(12)-TCGTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: rhiN2
Ortholog function: Rhamnogalacturonyl hydrolase (EC 3.2.1.172)
Bacillus subtilis subsp. subtilis str. 168 BSU30120 -154 7.7 TCATTT-(13)-TCTTTT
Bacillus pumilus SAFR-032 BPUM_2659 -223 6.7 CCATTT-(12)-TCTTTT
-155 8.2 TCATTT-(13)-TCATTT
Bacillus licheniformis DSM 13 BLi03165 -139 8.2 TCATTT-(13)-TCATTT
Bacillus halodurans C-125 BH0485 -155 7.7 TCATTA-(13)-TCATTT
Bacillus clausii KSM-K16 ABC1149 -174 5.3 TCATTT-(13)-gCAaaT
Oceanobacillus iheyensis HTE831 OB2086 -169 6.7 TCAATT-(12)-TCATTA
Position: -185
Score: 7.7
Sequence: TCATTT-(13)-TCTTTT
Locus tag: BsubsJ_010100016263
BsubsJ_010100016263 -185 7.7 TCATTT-(13)-TCTTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ytcP
Ortholog function: Predicted unsaturated rhamnogalacturonyl ABC transporter, permease component 2
Bacillus subtilis subsp. subtilis str. 168 BSU30170 -206 7.7 TCATTT-(13)-TCTTTT
Bacillus licheniformis DSM 13 BLi03169 -208 6.7 TCATCT-(13)-TCTTTT
Bacillus clausii KSM-K16 ABC1146 -174 5.3 TCATTT-(13)-gCAaaT
Oceanobacillus iheyensis HTE831 OB2089 -169 6.7 TCAATT-(12)-TCATTA
Paenibacillus sp. JDR-2 Pjdr2_1804 -141 6.7 TCAATT-(13)-TCATTA
© 2009-2020 RegPrecise