Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of CodY regulog to Exiguobacterium sp. AT1b

Reference regulog properties
Source regulog: CodY - Bacillales
Regulator type: Transcription factor
Regulator family: CodY
Regulation mode:
Biological process: Amino acid metabolism
Effector: Guanosine triphosphate; Branched-chain amino acids
Phylum: Firmicutes
Propagated regulon:
Target genome Exiguobacterium sp. AT1b
Orthologous TF(s) EAT1b_2910
Regulated genes 13
Built upon 445 sites [see more]
Predicted regulatory interactions in Exiguobacterium sp. AT1b
Locus tag Position Score Sequence
Position: -63
Score: 5
Sequence: ATTTTTCAGAATATT
Locus tag: EAT1b_0150
EAT1b_0150 -63 5 ATTTTTCAGAATATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: gltA
Ortholog function: Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
Bacillus halodurans C-125 BH1728 -94 4.5 AAATGTCAGAAAAAT
Oceanobacillus iheyensis HTE831 OB3099 -202 4.6 AAATTTCAAAAAATA
Position: -297
Score: 4.8
Sequence: TGTTTTCTGAAAATT
Position: -232
Score: 5.1
Sequence: AATATTCAGAATATT
Position: -211
Score: 4.4
Sequence: TTTTATTTGAAAATT
Locus tag: EAT1b_0312
EAT1b_0312 -297 4.8 TGTTTTCTGAAAATT
-232 5.1 AATATTCAGAATATT
-211 4.4 TTTTATTTGAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: opuE
Ortholog function: Sodium/proline symporter
Bacillus subtilis subsp. subtilis str. 168 BSU06660 -256 5 ATTTTTCTGAATATT
Bacillus amyloliquefaciens FZB42 RBAM_007060 -273 4.5 ATATGTCAGAAAATT
Bacillus pumilus SAFR-032 BPUM_0643 -231 4.9 ATTTATCAGAAAATT
Bacillus licheniformis DSM 13 BLi00728 -289 5.1 AATATTCAGAATATT
Bacillus cereus ATCC 14579 BC3644 -214 5.3 AATTTTCTGAATATT
Position: -184
Score: 4.5
Sequence: TATTTTCTGACAACT
Locus tag: EAT1b_0667
EAT1b_0667 -184 4.5 TATTTTCTGACAACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: citZ
Ortholog function: Citrate synthase (si) (EC 2.3.3.1)
Bacillus subtilis subsp. subtilis str. 168 BSU29140 -224 4.3 AAATGTCTGATTATT
Bacillus amyloliquefaciens FZB42 RBAM_026180 -224 4.2 ATTAATCAGATTATT
Bacillus pumilus SAFR-032 BPUM_2556 -210 4.3 AAATGTCTGATTATT
Bacillus licheniformis DSM 13 BLi03062 -225 4.5 AAATGTCTGATAATT
Anoxybacillus flavithermus WK1 Aflv_0504 -209 4.3 AAAAGTCTGATAATT
Geobacillus kaustophilus HTA426 GK2736 -201 4.3 AAAAGTCTGATAATT
Oceanobacillus iheyensis HTE831 OB2168 -222 4.3 AAATATTAAAAAATT
Position: -65
Score: 4.9
Sequence: AATTGTATGAAAATT
Locus tag: EAT1b_1389
EAT1b_1389 -65 4.9 AATTGTATGAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: gltO
Ortholog function: Proton/sodium-glutamate symport protein
Bacillus pumilus SAFR-032 BPUM_0421 -252 5 AATTTTCTAAAAATA
-230 4.4 AATAGTATGAAAATA
Anoxybacillus flavithermus WK1 Aflv_1459 -140 4.9 ATTTTTCTGACAATT
Bacillus cereus ATCC 14579 BC1389 -88 4.6 AAAATTCAGAAAATA
Bacillus halodurans C-125 BH3820 -258 4.4 TATTTTTTGAAAAAA
Bacillus clausii KSM-K16 ABC3908 -77 4.3 AATTTTTAATAAAAT
Oceanobacillus iheyensis HTE831 OB0021 -36 4.9 AATTTTCTGAAAAAA
Position: -100
Score: 5.2
Sequence: TATTTTCTGAAAATT
Locus tag: EAT1b_2611
EAT1b_2611 -100 5.2 TATTTTCTGAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: lcfA
Ortholog function: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Anoxybacillus flavithermus WK1 Aflv_0564 -56 4.8 AAATTTCAGAAAATA
Bacillus cereus ATCC 14579 BC4526 -277 4.4 AAAAGTCAGAATATT
Oceanobacillus iheyensis HTE831 OB2122 -67 4.4 AAAATTCAAAAAATA
Position: -274
Score: 5
Sequence: AATTTTCTAAAAAAT
Position: -194
Score: 4.3
Sequence: AAAATTCAGAATAAT
Position: -114
Score: 4.4
Sequence: ATCTTTCAGAAAATT
Locus tag: EAT1b_2738
EAT1b_2738 -274 5 AATTTTCTAAAAAAT
-194 4.3 AAAATTCAGAATAAT
-114 4.4 ATCTTTCAGAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: oppB
Ortholog function: Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1)
Bacillus pumilus SAFR-032 BPUM_1071 -38 4.4 AATATACAGAAAAGT
Anoxybacillus flavithermus WK1 Aflv_2132 -102 4.6 AAATGTTAGAAAATT
Bacillus cereus ATCC 14579 BC1180 -65 4.4 TATTTTAAAAAAATA
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