Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of TnrA regulog to Bacillus sp. NRRL B-14911

Reference regulog properties
Source regulog: TnrA - Bacillales
Regulator type: Transcription factor
Regulator family: MerR
Regulation mode: repressor (activator)
Biological process: Nitrogen assimilation
Effector: NrgB, ammonium uptake protein; NrgA, ammonium uptake protein; Feedback-inhibited GlnA, glutamine synthetase
Phylum: Firmicutes
Propagated regulon:
Target genome Bacillus sp. NRRL B-14911
Orthologous TF(s) B14911_23497
Regulated genes 21
Built upon 304 sites [see more]
Predicted regulatory interactions in Bacillus sp. NRRL B-14911
Locus tag Position Score Sequence
Position: -173
Score: 4
Sequence: TGTTATTTTTTGTTATA
Locus tag: B14911_04259
B14911_04259 -173 4 TGTTATTTTTTGTTATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yuiC
Ortholog function: Hypothetical protein
Bacillus subtilis subsp. subtilis str. 168 BSU32070 -78 4.4 TGTCACATGATCTGACT
Bacillus amyloliquefaciens FZB42 RBAM_029120 -76 4.8 TGTTACATATTCTGACT
Bacillus pumilus SAFR-032 BPUM_2869 20 4.5 TGACAGATTTTCTTACT
Bacillus licheniformis DSM 13 BLi03389 -76 4.9 TGTTATATTTTCTGACT
Bacillus halodurans C-125 BH3404 -86 4.1 TGTGAGAATACCTCGCA
Position: -232
Score: 5.5
Sequence: TGTAAGAAAATCTGACA
Locus tag: B14911_23492
B14911_23492 -232 5.5 TGTAAGAAAATCTGACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ykzB
Ortholog function: Hypothetical protein
Bacillus subtilis subsp. subtilis str. 168 BSU13320 -130 5.5 TGTCATATTTTCTAACA
-87 3.9 CGGAAGAAAAATTAACA
Bacillus amyloliquefaciens FZB42 RBAM_013140 -130 4.8 TGTCAGGTTTTCTGACG
-87 4.1 CGGCAGAAAAATTGACA
Anoxybacillus flavithermus WK1 Aflv_1546 -172 5.4 TGTCATATTTTATAACA
-117 4.9 TGTTATAAAAAGTAACA
-86 4.9 TGTTATAAAAAGTAACA
Geobacillus kaustophilus HTA426 GK1862 -176 4.6 CGTTATATTTTCTAACG
-123 3.9 TGTAAATAAAATTAACA
Position: -84
Score: 5.5
Sequence: TGTCAGATTTTCTTACA
Locus tag: B14911_23497
B14911_23497 -84 5.5 TGTCAGATTTTCTTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: tnrA
Ortholog function: Transcriptional regulator of nitrogen assimilation, MerR family
Bacillus subtilis subsp. subtilis str. 168 BSU13310 -124 3.9 TGTTAATTTTTCTTCCG
-81 5.5 TGTTAGAAAATATGACA
Bacillus amyloliquefaciens FZB42 RBAM_013130 -124 4.1 TGTCAATTTTTCTGCCG
-81 4.8 CGTCAGAAAACCTGACA
Bacillus pumilus SAFR-032 BPUM_1230 -121 4 TGTCAACTTTCCTTCCA
-80 5.5 TGTTATATTTTCTAACA
Bacillus licheniformis DSM 13 BLi01490 -124 3.8 TGTAAACTTTTCTTCCG
-81 5.6 TGTTAGATTTTCTGACA
Anoxybacillus flavithermus WK1 Aflv_1544 -113 4.9 TGTTACTTTTTATAACA
-82 4.9 TGTTACTTTTTATAACA
-27 5.4 TGTTATAAAATATGACA
Geobacillus kaustophilus HTA426 GK1860 -86 3.9 TGTTAATTTTATTTACA
-33 4.6 CGTTAGAAAATATAACG
Bacillus halodurans C-125 BH1494 -110 5.5 TGTAAGAAAATCTAACA
Bacillus clausii KSM-K16 ABC1760 -99 5.5 TGTTAGATTTTCTTACA
-57 5 TGTGATATATTGTTACA
Oceanobacillus iheyensis HTE831 OB1650 -80 5.1 TGTTAGAAATACTAACA
-57 4.3 TGACATATAAGCTGACG
Paenibacillus sp. JDR-2 Pjdr2_5154 -302 5.7 TGTTAGATAATCTAACA
-41 5 TGTTAGAAAACATTACA
Position: -190
Score: 4.5
Sequence: TGTTAGTTTAATTAACA
Position: -99
Score: 5.6
Sequence: TGTTATATTATCTAACA
Locus tag: B14911_05289
B14911_05289 -190 4.5 TGTTAGTTTAATTAACA
-99 5.6 TGTTATATTATCTAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrgA
Ortholog function: Ammonium transporter
Anoxybacillus flavithermus WK1 Aflv_1332 -112 4.6 TGTCATGAAAAATAACA
-49 4.8 TGTAATATATTATAACC
-27 5 TGTTATAAAAAATGACA
Geobacillus kaustophilus HTA426 GK1452 -124 4.4 TGTTAAGAAATTTAACA
-48 5.4 TGTTATATATTATGACA
Bacillus halodurans C-125 BH3834 -138 4 TGTCAGATATAGGCACA
-113 4.9 TGTCTGATTATCTGACA
-41 4.3 TATTAGAAAAACTTACA
Bacillus clausii KSM-K16 ABC3928 -84 5.2 TGTTAGATATCCTGACA
Paenibacillus sp. JDR-2 Pjdr2_2141 -159 4.2 TGTGAAAAAACTTAACA
-34 4.5 TGTTAGTAAACATCACA
Position: -203
Score: 4.3
Sequence: TATTAAAAAATATAACA
Locus tag: B14911_09382
B14911_09382 -203 4.3 TATTAAAAAATATAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yuiC
Ortholog function: Hypothetical protein
Bacillus subtilis subsp. subtilis str. 168 BSU32070 -78 4.4 TGTCACATGATCTGACT
Bacillus amyloliquefaciens FZB42 RBAM_029120 -76 4.8 TGTTACATATTCTGACT
Bacillus pumilus SAFR-032 BPUM_2869 20 4.5 TGACAGATTTTCTTACT
Bacillus licheniformis DSM 13 BLi03389 -76 4.9 TGTTATATTTTCTGACT
Bacillus halodurans C-125 BH3404 -86 4.1 TGTGAGAATACCTCGCA
Position: -113
Score: 5.6
Sequence: TGTAAGATAATCTAACA
Locus tag: B14911_09392
B14911_09392 -113 5.6 TGTAAGATAATCTAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yuiA
Ortholog function: Uncharacterized conserved protein contain two CXXC motifs
Bacillus pumilus SAFR-032 BPUM_2871 20 4.5 TGACAGATTTTCTTACT
Bacillus licheniformis DSM 13 BLi03391 -76 4.9 TGTTATATTTTCTGACT
Position: -87
Score: 5
Sequence: TGTTATAAAACCTTACA
Locus tag: B14911_09157
B14911_09157 -87 5 TGTTATAAAACCTTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnR
Ortholog function: Transcriptional regulator of nitrogen excess response, MerR family
Bacillus subtilis subsp. subtilis str. 168 BSU17450 -82 4.3 TGTTAAGAATCCTTACA
-59 5 TGACACATAATATAACA
Bacillus amyloliquefaciens FZB42 RBAM_017250 -82 4.3 TGTTAAGATTCCTTACA
-59 4.9 TGACACAAAATATAACA
Bacillus pumilus SAFR-032 BPUM_1636 -82 4.4 TGTTAATATTCCTAACA
-59 5.1 TGACATATAATATAACA
-54 4.2 TATAATATAACATGACA
Bacillus licheniformis DSM 13 BLi01992 -81 4.2 TGTAAAGAATCCTTACA
-58 5 TGACACATTATATAACA
Anoxybacillus flavithermus WK1 Aflv_1508 -82 4.7 TGTGATAAAATGTAACG
-59 4.3 TGACATATAAGTTAACA
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