Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of RocR regulog to Bacillus amyloliquefaciens FZB42

Reference regulog properties
Source regulog: RocR - Bacillales
Regulator type: Transcription factor
Regulator family: Fis
Regulation mode: activator
Biological process: Arginine degradation; Ornithine degradation
Effector: Ornithine; L-citrulline
Phylum: Firmicutes
Propagated regulon:
Target genome Bacillus amyloliquefaciens FZB42
Orthologous TF(s) RBAM_037260
Regulated genes 3
Built upon 26 sites [see more]
Predicted regulatory interactions in Bacillus amyloliquefaciens FZB42
Locus tag Position Score Sequence
Position: -165
Score: 7.8
Sequence: CGCAAAAT-(1)-TCTTTGCG
Locus tag: RBAM_034980
RBAM_034980 -165 7.8 CGCAAAAT-(1)-TCTTTGCG
Supported by regulated orthologs from reference regulons
Ortholog gene name: rocA
Ortholog function: Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)
Bacillus subtilis subsp. subtilis str. 168 BSU37780 -213 8.6 CGCAAAAT-(1)-ATTTTGCA
-169 8 CGCAAAAT-(1)-AATTTGCG
Bacillus amyloliquefaciens FZB42 RBAM_034980 -199 7.6 CGCAAAGA-(1)-ATTTTGCA
-165 7.8 CGCAAAAT-(1)-TCTTTGCG
Position: -177
Score: 8.7
Sequence: CGCAAAAA-(1)-ATTTTGCG
Locus tag: RBAM_037250
RBAM_037250 -177 8.7 CGCAAAAA-(1)-ATTTTGCG
Supported by regulated orthologs from reference regulons
Ortholog gene name: rocD
Ortholog function: Ornithine aminotransferase (EC 2.6.1.13)
Bacillus subtilis subsp. subtilis str. 168 BSU40340 -175 7.9 TGCAAAAG-(1)-ATTTTGCA
Bacillus amyloliquefaciens FZB42 RBAM_037250 -177 8.7 CGCAAAAA-(1)-ATTTTGCG
Bacillus pumilus SAFR-032 BPUM_3060 -137 7.2 TGCAAAGA-(1)-ATTTTGCT
Bacillus licheniformis DSM 13 BLi00422 -142 8.7 CGCAAAAT-(0)-TTTTTGCG
Geobacillus kaustophilus HTA426 GK0188 -168 7.7 TGAAAAAA-(1)-TTTTTGCT
-93 8.1 TGAAAAAT-(1)-ATTTTGCA
-37 7.7 CGAAAAAT-(1)-TTTTTGCC
Bacillus halodurans C-125 BH3943 -215 7.3 TGCAAATT-(1)-TTTTTTCG
-172 8 AGAAAAAT-(1)-ATTTTTCG
Bacillus clausii KSM-K16 ABC0017 -173 8.5 CGCAAAAA-(1)-ATTTTTCG
-140 7.7 TGCAAAAA-(1)-TTTTTTCT
Position: -59
Score: 8.7
Sequence: CGCAAAAT-(1)-TTTTTGCG
Locus tag: RBAM_037260
RBAM_037260 -59 8.7 CGCAAAAT-(1)-TTTTTGCG
Supported by regulated orthologs from reference regulons
Ortholog gene name: rocR
Ortholog function: Transcriptional activator of arginine utilization, Fis family
Bacillus subtilis subsp. subtilis str. 168 BSU40350 -82 7.9 TGCAAAAT-(1)-CTTTTGCA
Bacillus amyloliquefaciens FZB42 RBAM_037260 -59 8.7 CGCAAAAT-(1)-TTTTTGCG
Bacillus pumilus SAFR-032 BPUM_3061 -89 7.2 AGCAAAAT-(1)-TCTTTGCA
Bacillus licheniformis DSM 13 BLi00421 -22 8.7 CGCAAAAA-(0)-ATTTTGCG
Bacillus cereus ATCC 14579 BC0473 -87 8.2 AGCAAAAA-(1)-TTTTTGCG
Bacillus halodurans C-125 BH3944 -116 8 CGAAAAAT-(1)-ATTTTTCT
-73 7.3 CGAAAAAA-(1)-AATTTGCA
Bacillus clausii KSM-K16 ABC0016 -95 7.7 AGAAAAAA-(1)-TTTTTGCA
-62 8.5 CGAAAAAT-(1)-TTTTTGCG
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