Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of CymR regulog to Bacillus amyloliquefaciens FZB42

Reference regulog properties
Source regulog: CymR - Bacillales
Regulator type: Transcription factor
Regulator family: Rrf2
Regulation mode: repressor
Biological process: Cysteine metabolism
Effector: O-acetyl-L-serine; CysK, cysteine synthetase
Phylum: Firmicutes
Propagated regulon:
Target genome Bacillus amyloliquefaciens FZB42
Orthologous TF(s) RBAM_024630
Regulated genes 8
Built upon 65 sites [see more]
Predicted regulatory interactions in Bacillus amyloliquefaciens FZB42
Locus tag Position Score Sequence
Position: -39
Score: 5.8
Sequence: TAATACCAATAAATTTAGTCGGAAATT
Locus tag: RBAM_000840
RBAM_000840 -39 5.8 TAATACCAATAAATTTAGTCGGAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cysK
Ortholog function: Cysteine synthase (EC 2.5.1.47)
Bacillus subtilis subsp. subtilis str. 168 BSU00730 -39 5.4 TAATACCAATACAAATAGTCGGAAATT
Bacillus amyloliquefaciens FZB42 RBAM_000840 -39 5.8 TAATACCAATAAATTTAGTCGGAAATT
Bacillus pumilus SAFR-032 BPUM_0057 -40 4.6 TtAaTaCaATaAAATTAcTcGGAgaTA
Bacillus licheniformis DSM 13 BLi00089 -38 5.6 TAATCCCAATAAAATTACTCGGAAATT
Anoxybacillus flavithermus WK1 Aflv_0065 -30 5 CAAATTCTATAAAAATACTCGGGATTA
Geobacillus kaustophilus HTA426 GK0065 -38 4.7 CAAAGTCGATAAAATTAATGGGGATTA
Bacillus cereus ATCC 14579 BC0075 -39 5.3 TAAAACCAATAAAAATACTCGGTGTTA
Bacillus halodurans C-125 BH0088 -39 5.2 GAAAACCAATAAATTTACTTGGGATTA
Bacillus clausii KSM-K16 ABC0109 -42 4.9 TAAAACCAATGAAGATACTAGGGATTG
Oceanobacillus iheyensis HTE831 OB0084 -41 6 TAAATCTTATAAAAATACTTGGAATTA
Paenibacillus sp. JDR-2 Pjdr2_0074 -44 5.7 AAAAACCAACTAAATTAGTCGGAATAA
Position: -85
Score: 6
Sequence: TTATTCTTATAAAATTACTAGGAAATA
Locus tag: RBAM_003900
RBAM_003900 -85 6 TTATTCTTATAAAATTACTAGGAAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yxeK
Ortholog function: Putative monooxygenase
Bacillus subtilis subsp. subtilis str. 168 BSU39520 -82 5.6 TTATTCATATTAAACGACTAGGAATAT
Bacillus amyloliquefaciens FZB42 RBAM_003900 -85 6 TTATTCTTATAAAATTACTAGGAAATA
Bacillus pumilus SAFR-032 BPUM_0345 -84 5.5 TAAAACCGATTAATTCAATCAGAAAAA
Position: -82
Score: 6
Sequence: TAATACTTATTAACTTTATCGGAATTA
Locus tag: RBAM_004850
RBAM_004850 -82 6 TAATACTTATTAACTTTATCGGAATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ydbM
Ortholog function: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Bacillus subtilis subsp. subtilis str. 168 BSU04520 -45 6.4 TAATACATATTAAATTTATCGGAATTA
Bacillus amyloliquefaciens FZB42 RBAM_004850 -82 6 TAATACTTATTAACTTTATCGGAATTA
Bacillus pumilus SAFR-032 BPUM_2341 -89 5.5 TAAATCCTATAAGTAAAGTGTGTTTTA
-61 4.9 TTATTCCGATTGGAAAAATCAGATATG
Bacillus licheniformis DSM 13 BLi00540 -45 5.9 TAATACTTATTAAATCTATCGGAATTT
Oceanobacillus iheyensis HTE831 OB0293 -45 5.5 TTATACCTATTGACTTACTAGGCATTA
Position: -76
Score: 5.3
Sequence: TATTTTCTATCAGAATAGTATGAATTA
Locus tag: RBAM_007330
RBAM_007330 -76 5.3 TATTTTCTATCAGAATAGTATGAATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: BH3126
Ortholog function: Hypothetical protein
Bacillus halodurans C-125 BH3126 -142 4.8 TAAAACCCACTTGACAGATGGGGATTA
-50 4.6 TAAAACAGACTTTTCCGATCTGTTTTA
Paenibacillus sp. JDR-2 Pjdr2_4820 -96 4.7 CATAACCAACTAAACAGGTAGGAATAA
Position: -299
Score: 4.7
Sequence: TTATTCCTATCAAAAAACTCGGGTTGA
Locus tag: RBAM_015400
RBAM_015400 -299 4.7 TTATTCCTATCAAAAAACTCGGGTTGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cysH
Ortholog function: Phosphoadenylyl-sulfate reductase (EC 1.8.4.8)
Bacillus amyloliquefaciens FZB42 RBAM_015400 -299 4.7 TTATTCCTATCAAAAAACTCGGGTTGA
Anoxybacillus flavithermus WK1 Aflv_0316 -100 5.1 AAATTCCGATAGAAAAACTAGGATTGA
Bacillus halodurans C-125 BH1486 -73 5.3 TAAATCATATCAAATTACATGGAATTA
Bacillus clausii KSM-K16 ABC0611 -265 4.9 AAATACCGAGTTTGTTAATCAGGATAA
Oceanobacillus iheyensis HTE831 OB1652 -98 5.4 CAATTCACATTGTATTACTATGAATTA
Paenibacillus sp. JDR-2 Pjdr2_5647 -45 5.2 AATAGCATATGAATTTACTTGGAATTA
Position: -49
Score: 5.9
Sequence: TAATCCATACTATACTCATAGGAATTA
Locus tag: RBAM_024380
RBAM_024380 -49 5.9 TAATCCATACTATACTCATAGGAATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yrrT
Ortholog function: SAM-dependent methyltransferase
Bacillus subtilis subsp. subtilis str. 168 BSU27280 -49 6.1 TAATCCATAGTATACTTATAGGAATTA
Bacillus amyloliquefaciens FZB42 RBAM_024380 -49 5.9 TAATCCATACTATACTCATAGGAATTA
Bacillus pumilus SAFR-032 BPUM_2363 -51 5.4 TAAAACATACTATACGCATAGGAATAA
Bacillus licheniformis DSM 13 BLi02856 -54 5.8 TAAATCATACTATACTTATAGGAATTG
Anoxybacillus flavithermus WK1 Aflv_0758 -36 6.4 TAATTCATACTATACTTATAGGAATTA
Geobacillus kaustophilus HTA426 GK2543 -51 5.9 AAAAACATACTATATTTATAGGAATTA
Bacillus cereus ATCC 14579 BC4369 -29 5.1 TAAAACCGATAAGAAAAAGGGGAATTT
Paenibacillus sp. JDR-2 Pjdr2_5106 -105 5.2 TAAATCCGATTAATAAGGTTGGAAAAA
Position: -54
Score: 5.3
Sequence: CAAAGCTTAGTAAACAAATTGGAATTA
Locus tag: RBAM_030850
RBAM_030850 -54 5.3 CAAAGCTTAGTAAACAAATTGGAATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ytmI
Ortholog function: Putative N-acetyltransferase
Bacillus subtilis subsp. subtilis str. 168 BSU29390 -54 5.7 AAAAGCTTAGTAAACAAATAGGAATTA
Bacillus amyloliquefaciens FZB42 RBAM_030850 -54 5.3 CAAAGCTTAGTAAACAAATTGGAATTA
Paenibacillus sp. JDR-2 Pjdr2_5233 -55 6.1 TAATTCTTAGTAAGTTTATAGGAATTA
Position: -100
Score: 5.3
Sequence: TAATTCCAATTTGTTTACTAAGCTTTG
Locus tag: RBAM_030860
RBAM_030860 -100 5.3 TAATTCCAATTTGTTTACTAAGCTTTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: ytlI
Ortholog function: Transcriptional regulator, LysR family
Bacillus subtilis subsp. subtilis str. 168 BSU29400 -125 5.7 TAATTCCTATTTGTTTACTAAGCTTTT
Bacillus amyloliquefaciens FZB42 RBAM_030860 -100 5.3 TAATTCCAATTTGTTTACTAAGCTTTG
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