Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of CodY regulog to Bacillus selenitireducens MLS10

Reference regulog properties
Source regulog: CodY - Bacillales
Regulator type: Transcription factor
Regulator family: CodY
Regulation mode:
Biological process: Amino acid metabolism
Effector: Guanosine triphosphate; Branched-chain amino acids
Phylum: Firmicutes
Propagated regulon:
Target genome Bacillus selenitireducens MLS10
Orthologous TF(s) BselDRAFT_1780
Regulated genes 24
Built upon 445 sites [see more]
Predicted regulatory interactions in Bacillus selenitireducens MLS10
Locus tag Position Score Sequence
Position: -315
Score: 4.9
Sequence: AATTATCTTAAAATT
Position: -69
Score: 5.3
Sequence: AATTTTTTGAAAATT
Locus tag: BselDRAFT_1501
BselDRAFT_1501 -315 4.9 AATTATCTTAAAATT
-69 5.3 AATTTTTTGAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: dppC
Ortholog function: Oligopeptide ABC transporter permease
Bacillus halodurans C-125 BH0030 -46 4.5 ATTTGTCAAAATATT
Oceanobacillus iheyensis HTE831 OB3067 -112 4.5 TATTTTTACAAAATT
Position: -238
Score: 4.5
Sequence: AATATTAAGATTATT
Locus tag: BselDRAFT_1509
BselDRAFT_1509 -238 4.5 AATATTAAGATTATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hom
Ortholog function: Homoserine dehydrogenase (EC 1.1.1.3)
Bacillus subtilis subsp. subtilis str. 168 BSU32260 -183 4.5 AATAATTAGAAAATA
Bacillus amyloliquefaciens FZB42 RBAM_029370 -185 4.8 AATATTTAGAAAATA
Bacillus pumilus SAFR-032 BPUM_2888 -185 4.8 AATATTTTGAAAATA
Anoxybacillus flavithermus WK1 Aflv_2414 -88 4.7 TTTTTTTAGAAAATT
Position: -274
Score: 4.4
Sequence: ATTTTTCCGAATATT
Locus tag: BselDRAFT_1561
BselDRAFT_1561 -274 4.4 ATTTTTCCGAATATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: oppA
Ortholog function: Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1)
Bacillus halodurans C-125 BH0347 -32 4.3 TATTTTCAAAATAGT
Bacillus clausii KSM-K16 ABC3661 -245 4.5 TATTTTTGGAAAATT
-55 4.5 AATAATTTTAAAATT
Position: -86
Score: 4.4
Sequence: ATTTTTCTGATATTT
Locus tag: BselDRAFT_0783
BselDRAFT_0783 -86 4.4 ATTTTTCTGATATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnH
Ortholog function: Glutamine ABC transporter, periplasmic glutamine-binding protein (TC 3.A.1.3.2)
Oceanobacillus iheyensis HTE831 OB1004 -108 4.4 ATTTTTCTGAAATAT
Position: -212
Score: 4.9
Sequence: ATTTATCAGAAAATT
Locus tag: BselDRAFT_0836
BselDRAFT_0836 -212 4.9 ATTTATCAGAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: dat
Ortholog function: Branched-chain amino acid aminotransferase (EC 2.6.1.42)
Bacillus pumilus SAFR-032 BPUM_2473 -166 4.7 AATTGTCTAATAATT
-54 4.6 AAGTGTCTGAAAATT
Bacillus licheniformis DSM 13 BLi02962 -192 4.7 AATTGTCTAATAATT
Anoxybacillus flavithermus WK1 Aflv_0590 -136 4.8 AATAATCAAAAAATT
-79 4.7 AATTTTCAAATAAAT
Bacillus cereus ATCC 14579 BC1396 -167 4.4 AATTTTTTGACTTTT
-88 5.3 AATTTTCTAAAAATT
Position: -144
Score: 4.5
Sequence: ATTTTTTAGAAAACT
Position: -59
Score: 5
Sequence: AATTTTTAGATAATT
Locus tag: BselDRAFT_0873
BselDRAFT_0873 -144 4.5 ATTTTTTAGAAAACT
-59 5 AATTTTTAGATAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hpr
Ortholog function: Transcriptional repressor of sporulation and extracellular protein, MarR family
Bacillus subtilis subsp. subtilis str. 168 BSU09990 -90 4.4 ATTTATTAAAAAATT
Bacillus licheniformis DSM 13 BLi01078 -93 4.7 ATTTTTTAAAAAATT
Anoxybacillus flavithermus WK1 Aflv_2290 -87 4.4 ATTTATTAAAAAATT
Bacillus halodurans C-125 BH1185 -148 4.7 ATTTTTTAAAAAATT
Position: -295
Score: 4.5
Sequence: AATCATCTGAATATT
Position: -279
Score: 4.4
Sequence: ATTTCTTTGAAAATT
Locus tag: BselDRAFT_0167
BselDRAFT_0167 -295 4.5 AATCATCTGAATATT
-279 4.4 ATTTCTTTGAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: citZ
Ortholog function: Citrate synthase (si) (EC 2.3.3.1)
Bacillus subtilis subsp. subtilis str. 168 BSU29140 -224 4.3 AAATGTCTGATTATT
Bacillus amyloliquefaciens FZB42 RBAM_026180 -224 4.2 ATTAATCAGATTATT
Bacillus pumilus SAFR-032 BPUM_2556 -210 4.3 AAATGTCTGATTATT
Bacillus licheniformis DSM 13 BLi03062 -225 4.5 AAATGTCTGATAATT
Anoxybacillus flavithermus WK1 Aflv_0504 -209 4.3 AAAAGTCTGATAATT
Geobacillus kaustophilus HTA426 GK2736 -201 4.3 AAAAGTCTGATAATT
Oceanobacillus iheyensis HTE831 OB2168 -222 4.3 AAATATTAAAAAATT
Position: -212
Score: 4.2
Sequence: TTTATTATGAATATT
Locus tag: BselDRAFT_0615
BselDRAFT_0615 -212 4.2 TTTATTATGAATATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: metI
Ortholog function: Cystathionine gamma-synthase (EC 2.5.1.48)
Bacillus subtilis subsp. subtilis str. 168 BSU11870 -297 4.6 AATTATTAGAAATTT
-214 4.3 AACAATCAGAAAATT
Bacillus amyloliquefaciens FZB42 RBAM_011930 -314 4.6 AATTATTAGAAATTT
Bacillus pumilus SAFR-032 BPUM_1119 -297 4.4 AAAATACAGAAAATT
-287 4.1 AAATTTCAATTAATT
Bacillus licheniformis DSM 13 BLi01289 -164 4 AACAATCAGAATATT
Anoxybacillus flavithermus WK1 Aflv_2067 -228 4.4 ATTTTTCGGAAAATA
-200 4.6 AAAAATCAGAAAATT
Geobacillus kaustophilus HTA426 GK0866 -341 4.5 AAATTTAAAAAAATT
Bacillus cereus ATCC 14579 BC4253 -344 4.4 AATTTTTTAATAAAT
Paenibacillus sp. JDR-2 Pjdr2_4798 -6 4.4 AACTTTATGAAAATT
Position: -307
Score: 4.8
Sequence: AAATATCTGAAAATT
Locus tag: BselDRAFT_2916
BselDRAFT_2916 -307 4.8 AAATATCTGAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yuiB
Ortholog function: Hypothetical membrane protein
Bacillus subtilis subsp. subtilis str. 168 BSU32080 -36 4.9 TATTATCAGAAAATT
Bacillus amyloliquefaciens FZB42 RBAM_029130 -34 4.9 TATTATCAGAAAATT
Bacillus licheniformis DSM 13 BLi03390 -35 4.9 TATTATCAGAAAATT
Anoxybacillus flavithermus WK1 Aflv_2400 -35 5.2 AATTATCTGAAAATT
Geobacillus kaustophilus HTA426 GK2950 -54 4.4 TTTTTACAGAAAATT
Bacillus halodurans C-125 BH3405 -47 4.3 AAAATTCTGATAATA
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