Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of RhaS regulog to Escherichia coli APEC O1

Reference regulog properties
Source regulog: RhaS - Enterobacteriales
Regulator type: Transcription factor
Regulator family: AraC
Regulation mode: activator
Biological process: Rhamnose utilization
Effector: Rhamnose
Phylum: Proteobacteria
Propagated regulon:
Target genome Escherichia coli APEC O1
Orthologous TF(s) APECO1_2563
Regulated genes 3
Built upon 31 sites [see more]
Predicted regulatory interactions in Escherichia coli APEC O1
Locus tag Position Score Sequence
Position: -105
Score: 11.1
Sequence: ATCTTTCCCTGGTTGCCA-(14)-TGTCAGTAACGAGAAGGT
Locus tag: APECO1_2564
APECO1_2564 -105 11.1 ATCTTTCCCTGGTTGCCA-(14)-TGTCAGTAACGAGAAGGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: rhaB
Ortholog function: Rhamnulokinase (EC 2.7.1.5)
Citrobacter koseri ATCC BAA-895 CKO_03100 -160 10.7 ACCTTTGCCTCCTTGCCA-(15)-TGTCAGTAACAGGAAGGT
Enterobacter sp. 638 Ent638_4067 -107 10.1 ATCTTTGATTCCTTGCCA-(15)-TGTCAGTGGCGAGAAGGT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0440 -105 9.7 AGCTTTGTCATTTTGCCA-(15)-TGGCACTCATTGGAAGGT
Escherichia coli str. K-12 substr. MG1655 b3904 -105 11.1 ATCTTTCCCTGGTTGCCA-(14)-TGTCAGTAACGAGAAGGT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04213 -106 10.5 ACCTTTGCTTTCTTGCCA-(15)-TGTCCGTAACGAGAAGGT
Salmonella typhimurium LT2 STM4047 -105 11.3 ATCTTTGCCTTGTTGCCA-(14)-TGTCAGTAACGAGAAGGT
Yersinia pestis KIM y0587 -212 10.1 ACTTTCGTCATTCTGCCA-(15)-TGGCAGTGATGAGAAGGT
Position: -232
Score: 10.3
Sequence: ACCTTCTCGTTACTGACA-(14)-TGGCAACCAGGGAAAGAT
Locus tag: APECO1_2563
APECO1_2563 -232 10.3 ACCTTCTCGTTACTGACA-(14)-TGGCAACCAGGGAAAGAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: rhaS
Ortholog function: L-rhamnose operon transcriptional activator RhaS, AraC family
Citrobacter koseri ATCC BAA-895 CKO_03099 -245 10.5 ACCTTCCTGTTACTGACA-(15)-TGGCAAGGAGGCAAAGGT
Enterobacter sp. 638 Ent638_4066 -245 9.1 ACCTTCTCGCCACTGACA-(15)-TGGCAAGGAATCAAAGAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0441 -262 9.8 ACCTTCCAATGAGTGCCA-(15)-TGGCAAAATGACAAAGCT
Escherichia coli str. K-12 substr. MG1655 b3905 -232 10.3 ACCTTCTCGTTACTGACA-(14)-TGGCAACCAGGGAAAGAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04214 -255 10.1 ACCTTCTCGTTACGGACA-(15)-TGGCAAGAAAGCAAAGGT
Salmonella typhimurium LT2 STM4048 -232 10.5 ACCTTCTCGTTACTGACA-(14)-TGGCAACAAGGCAAAGAT
Yersinia pestis KIM y0590 -265 10.2 ACCTTCTCATCACTGCCA-(15)-TGGCAGAATGACGAAAGT
Position: -123
Score: 9.3
Sequence: TTAATGCCGTGATTGCCA-(15)-CGGCAACAGGCGAAAGGT
Locus tag: APECO1_2561
APECO1_2561 -123 9.3 TTAATGCCGTGATTGCCA-(15)-CGGCAACAGGCGAAAGGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: rhaT
Ortholog function: L-rhamnose:proton symporter
Citrobacter koseri ATCC BAA-895 CKO_03094 -126 8.5 ATAACGTGCTGGTTGCCA-(15)-CGGCAATCCTCAAAAGGT
Enterobacter sp. 638 Ent638_4064 -127 8.3 TTAACGCGTTGATTGCCA-(15)-CGGCAACCTTCTGAAGGT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0450 -171 8.4 ACCTTCAAACCGATGCCG-(15)-TGGCACGCATCTGAAGGT
Escherichia coli str. K-12 substr. MG1655 b3907 -123 9.3 TTAATGCCGTGATTGCCA-(15)-CGGCAACAGGCGAAAGGT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04216 -127 8.6 TTAAGCCCATGGTTGCCA-(15)-TGGCAACGTCCTGAAGGC
Salmonella typhimurium LT2 STM4050 -271 9.7 TTCTTTGCATTGTTGCCA-(14)-TGTCGTTATGATGAAGGT
-127 7.8 TTAACGTGCTGATTGCCA-(15)-CGGCAATCGTTATAAGGT
Yersinia pestis KIM y0593 -149 9.3 ACCTACTGAATTTTGCCA-(15)-AGGCAGTCAGCCGAAGGT
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