Propagation of Fnr regulog to Buchnera aphidicola str. Bp (Baizongia pistaciae)
| Source regulog: | Fnr - Enterobacteriales |
| Regulator type: | Transcription factor |
| Regulator family: | CRP |
| Regulation mode: | activator (repressor) |
| Biological process: | Energy metabolism; Anaerobic metabolism |
| Effector: | Oxygen |
| Phylum: | Gammaproteobacteria |
| Propagated regulon: | |
| Target genome | Buchnera aphidicola str. Bp (Baizongia pistaciae) |
| Orthologous TF(s) | No orthologous TFs found |
| Regulated genes | 19 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -195
Score: 4.8 Sequence: TTGAAATAAATCAA
Position: -150
Score: 3.6 Sequence: TTTTTAAATATCAT
Position: -80
Score: 3.6 Sequence: TTTTTATATATTAA
Locus tag: bbp002
|
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| bbp002 | -195 | 4.8 | TTGAAATAAATCAA | |
| -150 | 3.6 | TTTTTAAATATCAT | ||
| -80 | 3.6 | TTTTTATATATTAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: atpB | ||||
| Ortholog function: ATP synthase A chain (EC 3.6.3.14) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00078 | -122 | 4.2 | TTGTTTGAAATCAC |
| Enterobacter sp. 638 | Ent638_4126 | -292 | 3.7 | TTGATTAATATGAC |
| Erwinia amylovora ATCC 49946 | EAM_3480 | -124 | 3.9 | TCGATTGAAATCAC |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4518 | -191 | 3.7 | ATGATTGTTAGCAA |
| Escherichia coli str. K-12 substr. MG1655 | b3738 | -123 | 4.2 | TTGTTTGAAATCAC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04143 | -122 | 4.2 | TTGTTTGAAATCAC |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0046 | -225 | 3.9 | ATTATTAAAAACAA |
| Proteus mirabilis HI4320 | PMI3058 | -130 | 4 | |
| Salmonella typhimurium LT2 | STM3871 | -122 | 4.2 | TTGTTTGAAATCAC |
|
Position: -170
Score: 3.8 Sequence: TTTTTTTTAATCAT
Position: -167
Score: 3.8 Sequence: TTTTTAATCATCAA
Locus tag: bbp143
|
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| bbp143 | -170 | 3.8 | TTTTTTTTAATCAT | |
| -167 | 3.8 | TTTTTAATCATCAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nuoA | ||||
| Ortholog function: NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00508 | -198 | 4 | TCGATGTAAATTAA |
| Edwardsiella tarda EIB202 | ETAE_2385 | -292 | 3.7 | TTGATGTAAACGAA |
| Escherichia coli str. K-12 substr. MG1655 | b2288 | -433 | 3.7 | ATGATGTTAAAAAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02678 | -392 | 3.6 | TTGATTTACGACGG |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3089 | -207 | 3.8 | TTGTTATTTGTAAA |
| Salmonella typhimurium LT2 | STM2328 | -199 | 4.6 | TTGATGTAAATTAA |
| Serratia proteamaculans 568 | Spro_3308 | -280 | 3.8 | TTTCTACACATCAA |
| Yersinia pestis KIM | y1630 | -465 | 3.6 | TTTTATTAAAACAA |
|
Position: 31
Score: 4.1 Sequence: CTGATGATGATCAA
Locus tag: bbp144
|
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| bbp144 | 31 | 4.1 | CTGATGATGATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nuoB | ||||
| Ortholog function: NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00509 | -198 | 4 | TCGATGTAAATTAA |
| Edwardsiella tarda EIB202 | ETAE_2384 | -292 | 3.7 | TTGATGTAAACGAA |
| Escherichia coli str. K-12 substr. MG1655 | b2287 | -433 | 3.7 | ATGATGTTAAAAAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02677 | -392 | 3.6 | TTGATTTACGACGG |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3088 | -207 | 3.8 | TTGTTATTTGTAAA |
| Salmonella typhimurium LT2 | STM2327 | -199 | 4.6 | TTGATGTAAATTAA |
| Serratia proteamaculans 568 | Spro_3307 | -280 | 3.8 | TTTCTACACATCAA |
| Yersinia pestis KIM | y1631 | -465 | 3.6 | TTTTATTAAAACAA |
|
Position: -46
Score: 4.1 Sequence: TTGATATTTAAAAA
Locus tag: bbp145
|
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| bbp145 | -46 | 4.1 | TTGATATTTAAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nuoD | ||||
| Ortholog function: NADH-ubiquinone oxidoreductase chains C and D (EC 1.6.5.3) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00510 | -198 | 4 | TCGATGTAAATTAA |
| Edwardsiella tarda EIB202 | ETAE_2383 | -292 | 3.7 | TTGATGTAAACGAA |
| Escherichia coli str. K-12 substr. MG1655 | b2286 | -433 | 3.7 | ATGATGTTAAAAAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02676 | -392 | 3.6 | TTGATTTACGACGG |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3087 | -207 | 3.8 | TTGTTATTTGTAAA |
| Salmonella typhimurium LT2 | STM2326 | -199 | 4.6 | TTGATGTAAATTAA |
| Serratia proteamaculans 568 | Spro_3306 | -280 | 3.8 | TTTCTACACATCAA |
| Yersinia pestis KIM | y1632 | -465 | 3.6 | TTTTATTAAAACAA |
|
Position: -47
Score: 4.7 Sequence: TTGATCTTGAACAA
Locus tag: bbp148
|
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| bbp148 | -47 | 4.7 | TTGATCTTGAACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nuoG | ||||
| Ortholog function: NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00513 | -198 | 4 | TCGATGTAAATTAA |
| Edwardsiella tarda EIB202 | ETAE_2380 | -292 | 3.7 | TTGATGTAAACGAA |
| Escherichia coli str. K-12 substr. MG1655 | b2283 | -433 | 3.7 | ATGATGTTAAAAAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02673 | -392 | 3.6 | TTGATTTACGACGG |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3084 | -207 | 3.8 | TTGTTATTTGTAAA |
| Salmonella typhimurium LT2 | STM2323.S | -199 | 4.6 | TTGATGTAAATTAA |
| Serratia proteamaculans 568 | Spro_3303 | -280 | 3.8 | TTTCTACACATCAA |
| Yersinia pestis KIM | y1635 | -465 | 3.6 | TTTTATTAAAACAA |
|
Position: -31
Score: 3.9 Sequence: TTTTTATTAAACAA
Locus tag: bbp154
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| bbp154 | -31 | 3.9 | TTTTTATTAAACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nuoM | ||||
| Ortholog function: NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00519 | -198 | 4 | TCGATGTAAATTAA |
| Edwardsiella tarda EIB202 | ETAE_2374 | -292 | 3.7 | TTGATGTAAACGAA |
| Escherichia coli str. K-12 substr. MG1655 | b2277 | -433 | 3.7 | ATGATGTTAAAAAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02667 | -392 | 3.6 | TTGATTTACGACGG |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3078 | -207 | 3.8 | TTGTTATTTGTAAA |
| Salmonella typhimurium LT2 | STM2317 | -199 | 4.6 | TTGATGTAAATTAA |
| Serratia proteamaculans 568 | Spro_3297 | -280 | 3.8 | TTTCTACACATCAA |
| Yersinia pestis KIM | y1641 | -465 | 3.6 | TTTTATTAAAACAA |
|
Position: -131
Score: 4.2 Sequence: TTACTATAAATCAA
Locus tag: bbp178
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| bbp178 | -131 | 4.2 | TTACTATAAATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: sodA | ||||
| Ortholog function: Manganese superoxide dismutase (EC 1.15.1.1) | ||||
| Enterobacter sp. 638 | Ent638_4063 | -132 | 3.6 | ATGATACAAAAAAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0092 | -143 | 3.5 | ATGAAGTAAAGCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04217 | -146 | 4.2 | TTGTTCTACATCAC |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0075 | -346 | 3.6 | TTATGTCAAATCAA |
| Proteus mirabilis HI4320 | PMI3036 | -164 | 3.8 | TTTATTTAAAATAA |
| -85 | 4 | ATGATTTTCATTAA | ||
|
Position: -67
Score: 4.1 Sequence: TTATTTAACATCAA
Position: -6
Score: 3.8 Sequence: ATTATTATGATCAA
Locus tag: bbp284
|
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| bbp284 | -67 | 4.1 | TTATTTAACATCAA | |
| -6 | 3.8 | ATTATTATGATCAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pfkA | ||||
| Ortholog function: 6-phosphofructokinase (EC 2.7.1.11) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_03085 | -132 | 4 | CTGACCTGAATCAA |
| Edwardsiella tarda EIB202 | ETAE_3450 | -223 | 4 | CTGACCTGAATCAA |
| Enterobacter sp. 638 | Ent638_4056 | -174 | 4 | CTGACCTGAATCAA |
| Erwinia amylovora ATCC 49946 | EAM_0103 | -31 | 4 | ATTATTTGCATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4307 | -140 | 4 | CTGACCTGAATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b3916 | -125 | 4 | CTGACCTGAATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04223 | -123 | 4 | CTGACCTGAATCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4774 | -203 | 4.1 | TTGATCTCAAAAAA |
| Proteus mirabilis HI4320 | PMI3203 | -194 | 3.7 | TTAATGCGCATCAA |
| Salmonella typhimurium LT2 | STM4062 | -126 | 4 | CTGACCTGAATCAA |
| Serratia proteamaculans 568 | Spro_4807 | -145 | 4.1 | GTGACTTGAATCAA |
| Yersinia pestis KIM | y0059 | -148 | 4.2 | CTGACTTGAATCAA |
|
Position: -35
Score: 3.9 Sequence: TTGTGATAAATAAA
Position: -33
Score: 3.4 Sequence: GTGATAAATAAAAA
Position: -5
Score: 3.6 Sequence: ATGATATGAAAAAA
Locus tag: bbp415
|
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| bbp415 | -35 | 3.9 | TTGTGATAAATAAA | |
| -33 | 3.4 | GTGATAAATAAAAA | ||
| -5 | 3.6 | ATGATATGAAAAAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cyoC | ||||
| Ortholog function: Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_02731 | -267 | 3.7 | TTGTTGATAATTAA |
| Erwinia amylovora ATCC 49946 | EAM_0983 | -207 | 3.7 | GTTATTTAAATCAG |
| Escherichia coli str. K-12 substr. MG1655 | b0430 | -241 | 3.7 | TTGTTTTATTTCAC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00392 | -49 | 3.7 | TTGAGGTCGTTCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3877 | -336 | 3.8 | TTGTGAGCTATCAA |
| Proteus mirabilis HI4320 | PMI0106 | 9 | 3.6 | ATGAAATACATAAA |
| Salmonella typhimurium LT2 | STM0441 | -268 | 3.4 | TTTATTGATAATAA |
| Serratia proteamaculans 568 | Spro_1088 | -293 | 3.6 | TTCTTTTACATTAA |
| Yersinia pestis KIM | y1019 | -223 | 3.5 | TTGTTTTTCCTTAA |
|
Position: -47
Score: 3.5 Sequence: TTAATTTATCTAAA
Position: -43
Score: 3.5 Sequence: TTTATCTAAATAAG
Locus tag: bbp416
|
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| bbp416 | -47 | 3.5 | TTAATTTATCTAAA | |
| -43 | 3.5 | TTTATCTAAATAAG | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cyoB | ||||
| Ortholog function: Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_02730 | -267 | 3.7 | TTGTTGATAATTAA |
| Erwinia amylovora ATCC 49946 | EAM_0984 | -207 | 3.7 | GTTATTTAAATCAG |
| Escherichia coli str. K-12 substr. MG1655 | b0431 | -241 | 3.7 | TTGTTTTATTTCAC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00393 | -49 | 3.7 | TTGAGGTCGTTCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3876 | -336 | 3.8 | TTGTGAGCTATCAA |
| Proteus mirabilis HI4320 | PMI0107 | 9 | 3.6 | ATGAAATACATAAA |
| Salmonella typhimurium LT2 | STM0442 | -268 | 3.4 | TTTATTGATAATAA |
| Serratia proteamaculans 568 | Spro_1089 | -293 | 3.6 | TTCTTTTACATTAA |
| Yersinia pestis KIM | y1020 | -223 | 3.5 | TTGTTTTTCCTTAA |
|
Position: -51
Score: 3.7 Sequence: TTGTTATAGATAAT
Locus tag: bbp531
|
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| bbp531 | -51 | 3.7 | TTGTTATAGATAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pitA | ||||
| Ortholog function: Phosphate transporter, low-affinity | ||||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0048 | -140 | 4 | TTGATTTATATTGA |
| Escherichia coli str. K-12 substr. MG1655 | b3493 | -116 | 3.8 | TTGAGTGAAATCCA |
| Salmonella typhimurium LT2 | STM3589 | -116 | 4.2 | GTGATATCAAACAA |
| Yersinia pestis KIM | y3862 | -201 | 4.1 | TTGAATAAAATCAT |